SAMPLE CONTROL FOR CORRECTION OF SAMPLE MATRIX EFFECTS IN ANALYTICAL DETECTION METHODS

• US 20090162888A1
• Filed: 05/08/2007
• Published: 06/25/2009
• Est. Priority Date: 05/16/2006
• Status: Abandoned Application

• Current Assignee: Koninklijke Philips N.V.
• Original Assignee: Koninklijke Philips Electronics N.V. (Koninklijke Philips N.V.)
• Inventors: Lucassen, Gerardus Wilhelmus, Neerken, Sieglinde, Schmidt, Kristiane Anne
• Application Number:
  US12/300,519
• Publication Number:
  US 20090162888A1
• Time in Patent Office: Days
• US Class Current: 435/29
• CPC Class Codes: G01N 33/5306 Improving reaction conditions, e.g. reduction of non-specific binding, promotion of specific binding
• CPC Class Codes: G01N 33/58 involving labelled substances G01N33/53 takes precedence
• CPC Class Codes: Y10T 436/143333 Saccharide [e.g., DNA, etc.]

Abstract

Methods and systems are described suitable to determine the effects of sample matrix on the detection of a label so as to allow correction for these sample matrix effects when using the label in an analytical detection technique. The method is particularly advantageous for use in a disposable molecular diagnosis cartridge.

Claims

1. A method for determining sample matrix effects of a sample on the detection of a label, the method comprising the steps of:

(a) contacting a predetermined amount of said label or a different label, with a background sample comprising sample matrix or sample-like matrix,

(b) contacting a predetermined amount of said label, or of said different label, with a background-free sample not comprising sample matrix or sample-like matrix or any other compound which is capable of interfering with the detection of the label,

(c) detecting said label or said different label in said background sample and said background-free sample, and

(d) determining a difference between the detection of said label or said different label in said background sample and in said background-free sample, corresponding to said sample matrix effects.

5. The method according to claim 1, wherein the correction for sample matrix effects is performed using two or more predetermined amounts of label.

6. The method according to claim 1, wherein said analyte is selected from the group consisting of a nucleic acid, a protein, a carbohydrate, a lipid, a chemical substance, an antibody, a microorganism, and a eukaryotic cell.

7. The method according to claim 1, wherein said detection in step (c) or in steps (b) and (c), respectively, is performed using an optical detection method.

8. The method according to claim 7, wherein said optical detection method is SE(R)RS and wherein said label or said different label is a SE(R)RS-active labels.

9. The method according to claim 8, further comprising, prior to detection, contacting of said label or said different label with a SE(R)RS-active surface.

10. The method according to claim 9, wherein said SE(R)RS-active surface is a colloidal suspension of silver or gold nanoparticles, or aggregated colloids thereof.

12. The method according to claim 9, wherein said analyte-specific probe is provided with a binding-sensitive label.

13. The method according to claim 9, wherein said analyte is a nucleotide sequence and said labeled analyte-specific probe is a nucleotide or nucleotide analogue sequence having a sequence complementary to a sequence within said analyte.

2. A method for determining sample matrix effects on the detection of an analyte in a sample, the method comprising the steps of:

(a) providing a test sample from said sample in which said analyte is to be detected, a background sample comprising sample matrix or sample-like matrix, and a background-free sample, not comprising sample matrix or sample-like matrix,

(b) detecting and/or quantifying the analyte in said test sample using a label,

(c) detecting said sample matrix effects, by a method comprising the steps of;

(i) contacting said background sample with a predetermined amount of said label or a different label,

(ii) contacting said background-free sample with a predetermined amount of label or said different label,

(iii) detecting said label or said different label in said background sample and in said background-free sample,

(iv) determining said sample matrix effects by determining a difference between the detection of said label or said different label in said background sample and said background-free sample,

(d) correcting the detection and/or quantification of said analyte in said test sample of step (b) with said sample matrix effects determined in (iv).

3. The method of claim 2, wherein said background sample is a fraction of said sample in which the analyte is to be detected.

4. The method of claim 2, wherein said background sample comprises sample matrix or sample-like matrix.

11. The method according to claim 2, wherein said detection of said analyte is performed using a labeled analyte-specific probe.

14. The method according to claim 2, wherein said detection of said analyte is performed using an analyte specific probe capable of binding to a SE(R)RS-active surface and a labeled surrogate probe, and whereby said analyte competes with said labeled surrogate probe for the binding to said analyte-specific probe.

15. The method according to claim 2, wherein said detection and/or quantification of said analyte in step (b) is based on the detection of a labeled analyte-specific probe or labeled surrogate probe and wherein said correction step (d) is performed by correcting said detection of said labeled analyte-specific probe or labeled surrogate probe with said sample matrix effects determined in (iv).

16. A system for determining sample matrix effects of a sample on the detection of a label, comprising:

(a) means for contacting a predetermined amount of said label or a different label, with a background sample comprising sample matrix or sample-like matrix,

(b) means for contacting a predetermined amount of said label, or of said different label, with a background-free sample not comprising sample matrix or sample-like matrix or any other compound which is capable of interfering with the detection of the label,

(c) means for detecting said label or said different label in said background sample and said background-free sample, and

(d) means for determining a difference between the detection of said label or said different label in said background sample and in said background-free sample, corresponding to said sample matrix effects.

18. The system according to claim 16, further comprising a first source (101) of one or more samples selected from the group consisting of the test sample containing said analyte, background sample and background-free sample, and a second source (102) of one or more labels and optionally a third source of additives (110).

19. The system according to claim 18, wherein said first source (101) comprises specialized chambers for said test sample containing said analyte, background sample and background-free sample, respectively.

20. The system according to claim 16, further comprising chambers for contacting said test sample containing said analyte, background sample and background-free sample with said labels.

21. The system of claim 18, wherein said second source (102) of said one or more labels, comprises a chamber (108) for an analyte-specific label and a chamber (109) for a label.

17. A system for determining sample matrix effects on the detection of an analyte in a sample comprising:

(a) means for providing a test sample from said sample in which said analyte is to be detected, a background sample comprising sample matrix or sample-like matrix, and a background-free sample, not comprising sample matrix or sample-like matrix,

(b) means for detecting and/or quantifying the analyte in said test sample using a label,

(c) means for contacting said background sample with a predetermined amount of said label or a different label,

(d) means for contacting said background-free sample with a predetermined amount of said label or said different label,

(e) means for detecting said label or said different label in said background sample and in said background-free sample,

(f) means for determining said sample matrix effects by determining a difference between the detection of said label or said different label in said background sample and said background-free sample,

(g) means for correcting the detection and/or quantification of said analyte in said test sample responsive to the means for determining the sample matrix effects.

22. A disposable cartridge (117) for use in a system for determining sample matrix effects on the detection of an analyte in a sample, comprising:

a first source (101) of one or more samples selected from the group consisting of the test sample containing said analyte, background sample and background-free sample, and

a second source (102) of one or more labels and optionally a third source of additives (110), and

means for contacting said background sample with a predetermined amount of said label or a different label, for contacting said background-free sample with a predetermined amount of said label or a different label, and for contacting the test sample with a predetermined amount of said label or a different label, and

a window to allow detection of said label or said different label in said test sample, said background sample and said background-free sample.