APPARATUS FOR MEASURING EFFECT OF TEST COMPOUNDS ON BIOLOGICAL OBJECTS

• US 20090186374A1
• Filed: 02/21/2008
• Published: 07/23/2009
• Est. Priority Date: 01/23/2008
• Status: Abandoned Application

• Current Assignee: MCU Designs, Inc.
• Original Assignee: Etogen Scientific
• Inventors: Okun, Ilya, Kaler, Gregory, Okun, Alex
• Application Number:
  US12/035,205
• Publication Number:
  US 20090186374A1
• Time in Patent Office: Days
• US Class Current: 435/29
• CPC Class Codes: G01N 2035/00534 Mixing by a special element, e.g. stirrer
• CPC Class Codes: G01N 2035/0097 monitoring reactions as a function of time
• CPC Class Codes: G01N 2035/1032 Dilution or aliquotting
• CPC Class Codes: G01N 33/5008 for testing or evaluating the effect of chemical or biological compounds, e.g. drugs, cosmetics

Abstract

An apparatus and method for real-time measurement of an effect of different concentrations of a test compound or series of test compounds on living cells, in which a flow of cell suspension is combined with a flow of the test compound and a cellular response of the living cells is repeatedly measured by a detector along a length of a detection zone where the cell suspension-test compound mixture is situated. The apparatus may be used in automated screening of libraries of compounds, and is capable of real-time variation of concentrations of test compounds and generation of three-dimensional dose/response/time profiles within a short timespan.

Claims

1. An apparatus comprising;

an automated test compound source capable of providing one or more test compounds at a programmably controlled flow rate;

an automated living cell or particle source capable of providing one or more cell or particle types at a programmably controlled flow rate;

an automated dilution reagent source capable of providing a dilution reagent at a programmably controlled flow rate;

a mixing chamber in fluid communication with said test sample source, said cell or particle source, and said dilution reagent source wherein said mixing chamber is adapted to combine a flow of at least one test compound received from said test compound source with a flow of dilution reagent received from said dilution reagent source, to provide a test solution, which is combined with the cells or particles received from said cell or particle source to generate a combined stream; and

a detector comprising;

i) a detection capillary liquidly coupled with the mixing chamber to receive and hold the length of the combined stream after the flow is stopped; and

ii) a detector, for measuring changes in properties of said cells, located along the length of the detection capillary.

2. The apparatus of claim 1, wherein said automated test compound source and said automated dilution reagent source are capable of creating variable flow rates of the test compound and the dilution reagent, respectively.

3. The apparatus of claim 2, wherein the flow rate of the test compound increases proportionally to the decrease in the flow rate of the dilution buffer to maintain a constant test solution flow rate while increasing the concentration of the test compound along a stream of the test solution.

4. The apparatus of claim 1, further comprising an automated standard reagent source capable of providing one or more standard reagents having a known effect on said cells to said mixing chamber at a programmably controlled flow rate, wherein said mixing chamber is adapted to combine a flow of said standard reagent with a flow of said dilution reagent to provide a standard solution that can be combined with cells or particles received from said cell or particle source to generate a combined mixture flow.

5. The apparatus of claim 4, wherein the flow rate of the standard reagent increases proportionally to the decrease in the flow rate of the dilution buffer to maintain a constant standard solution flow rate while increasing the concentration of the standard reagent along a stream of the reagent solution.

6. The apparatus of claim 4, wherein said combined mixture flow is comprised of the cells or particles, the test compound, the dilution buffer, and the standard reagent.

7. The apparatus of claim 1, further comprising a pump fluidly coupled with the exit end of the capillary that provides a pull out rate equal to rate of combined stream entering the capillary from the mixer under positive pressure created by combined flow rate of fluids into the mixer to eliminate a pressure drop during flow of fluids within the apparatus.

8. The apparatus of claim 1, further comprising a wash pump fluidly coupled with the exit end of the capillary to provide a counter-flow of at least one cleaning solution into said capillary and said mixing chamber and an outlet port on said mixing chamber coupled with a vacuum source to evacuate the cleaning solution.

9. The apparatus of claim 1, wherein said mixing chamber comprises:

a cell intake port fluidly coupled with said cell or particle source to receive stream of cells or particles from said test compound source;

at least one test sample intake port to receive said test sample from a nozzle fluidly coupled with said test sample source;

a dilution reagent intake port to receive dilution reagent from said dilution reagent source;

at least one mixing zone in fluid connection with the cell intake port, the test sample intake port, and the dilution reagent intake port;

an outlet port coupled with a vacuum source to evacuate a wash solution; and

,

at least one outlet port liquidly coupled with said capillary to provide a combined stream to the capillary.

10. The apparatus of claim 9, further comprising a standard reagent intake port to receive standard reagent from the standard reagent source, which is fluidly coupled to the mixing zone.

11. The apparatus of claim 1, wherein said detector is selected from a photometer, a fluorometer, a cytometer, a radiometer.

12. The apparatus of claim 1, wherein said cell types or particle types are located in an array.

13. A method for determining a response of living cells to a test sample, comprising:

providing a flow of a test sample;

providing a flow of living cells;

combining said flow of test sample with said flow of living cells to form a combined flow of said test sample and said living cells in a mixing zone;

directing said combined flow of said test sample and said cells to a capillary;

stopping the combined flow when the capillary is filled in;

repeatedly detecting and measuring a response of the living cells to the test sample along the capillary length to affect a kinetic analysis of the effect of said test compound on said living cells.

14. The method of claim 13, wherein combining said flow of test sample with said flow of living cells comprises mixing said test sample and said living cells in a mixing zone.

15. The method of claim 13 further comprising:

providing an increasing flow of said test sample;

providing a decreasing flow of the dilution reagent;

providing a constant flow of said living cells;

combining said flow of test sample, dilution reagent and living cells to form a combined flow in said mixing zone;

directing said combined flow to a capillary;

stopping the combined flow when the capillary is filled in.

16. The method of claim 15, wherein a sum of flow rates of said test sample and said dilution reagent is constant, while the concentration of the test sample increases along the combined flow.

17. The method of claim 13 wherein kinetic responses from different locations in the capillary length represent independent traces from a multiplicity of cells located along the capillary at a constant concentration of the test sample.

18. The method of claim 13 wherein kinetic responses from different locations in the capillary length represent independent traces from a multiplicity of cells located along the capillary at variable concentrations of the test sample.

19. The method of claim 13, comprising determining a concentration-dependent response of said cells to said test sample after combining said test sample with said cells in said mixing zone.

20. The method of claim 13, wherein said response of said cells comprises a change in characteristics of said cells, induced by said test sample.

21. The method of claim 13, comprising determining a dose-time-response curve of said test sample on said living cells.

22. The method of claim 13, further comprising a retrowash wherein at least one wash solution is provided through output extremity of the capillary and vacuumed off through an outlet port in the mixing zone,

23. The method of claim 13 further comprising:

providing a flow of a standard reagent;

combining said flow of said standard reagent, with said flows of the test sample, the dilution reagent and the living cells to form a combined flow of said standard reagent, said test sample, said dilution reagent, and said living cells in said mixing zone;

directing said combined flow to said capillary;

stopping the combined flow when the capillary is filled in.

24. The method of claim 23 further comprising:

providing a constant flow of the standard reagent;

providing an increasing flow of said test sample;

providing a decreasing flow of a dilution reagent;

providing a constant flow of living cells;

combining said flow of said standard reagent, with the flow of the test sample, the dilution reagent and the living cells to form a combined flow in said mixing zone;

directing said combined flow to said capillary; and

stopping the combined flow when the capillary is filled in.

25. The method of claim 24, wherein a sum of flow rates of said test sample and said dilution reagent is constant, while the concentration of the test sample increases along the combined flow.

26. The method of claim 23, wherein kinetic responses from different locations in the capillary length represent independent traces from a multiplicity of cells located along the capillary at variable concentrations of the test sample in the presence of a constant concentration of the standard reagent.

27. The method of claim 23, comprising determining a concentration-dependent response of said cells to said test sample in the presence of constant concentration of said standard reagent after combining said test sample, said standard reagent and said cells in said mixing zone.

28. The method of claim 23, wherein said response of said cells comprises a change in characteristics of said cells, induced by said standard reagent in the presence of different concentrations of the test sample.

29. The method of claim 23, comprising determining a dose-time-response curve of said test sample on said living cells in the presence of said standard reagent.

30. The method of claim 23, wherein said test sample is selected from an agonist, an antagonist and an allosteric modulator.

31. The method of claim 23, wherein said standard reagent is selected from an agonist, an antagonist and an allosteric modulator.