BIOMIMETIC NUCLEIC ACIDS

• US 20090275130A1
• Filed: 05/02/2009
• Published: 11/05/2009
• Est. Priority Date: 05/02/2008
• Status: Abandoned Application

• Current Assignee: BioTex Incorporated, Synthecon, Inc.
• Original Assignee: BioTex Incorporated, Synthecon, Inc.
• Inventors: Navran, Stephen, Jackson, George, Strych, Ulrich
• Application Number:
  US12/434,644
• Publication Number:
  US 20090275130A1
• Time in Patent Office: Days
• US Class Current: 435/366
• CPC Class Codes: C12N 15/1048 SELEX

Abstract

The present invention is directed to nucleic acids with biomimetic properties and methods for producing said nucleic acids. In particular, this invention relates to nucleic acids exhibiting biomimetic properties in relation to proteins such as growth factors, hormones and/or other cell signaling proteins. Biomimetic properties may generally be defined as interactive ability in the same and/or similar manner as another biological molecule. This may, for example, include interacting with a ligand-binding biomolecule, such as a cell signaling receptor, in a manner similar to a native ligand. In the case of a signaling receptor, such biomimetic nucleic acids may in general act as an agonist or an antagonist to the given receptor. They may further act in competition to a native ligand.

Claims

1. A method for generating biomimetic nucleic acids comprising:

a) contacting a library of nucleic acids with a target molecule;

b) partitioning non-binding members to said target molecule of said library from binding members to said target biomolecule of said library;

c) selectively displacing the binding member to said target biomolecule utilizing at least a molecule that natively binds to said target molecule;

d) collecting displaced binding members of the library;

e) applying said displaced binding members of the library from step d to said target and repeating steps c and d for a selected number of rounds of selection; and

f) screening members of the library remaining from said number of rounds of selection for functional activity against said target molecule in comparison to said molecule that natively binds to said target.

2. The method of claim 1, wherein said functional activity comprises agonist or antagonist activity.

3. The method of claim 1, wherein said target molecule is a cell signaling receptor.

4. The method of claim 3, wherein said natively binding molecule is a ligand for said cell signaling receptor.

5. The method of claim 1, further comprising amplifying the displaced binding members between steps d and e.

6. The method of claim 1, further comprising contacting said library with a background material and collecting the non-binding members of the library for contacting with said target.

7. A functional ligand comprising:

a nucleic acid which binds with specificity to a target molecule, said nucleic acid is generated by a selective propagation method and is selectively displaceable from said target molecule by another molecule;

wherein said functional ligand has a functional activity in relation to said target molecule.

8. The functional ligand of claim 7, wherein said target molecule comprises a cell signaling receptor.

9. The functional ligand of claim 8, wherein said another molecule comprises a native ligand to said receptor.

10. The functional ligand of claim 8, wherein said functional activity comprises agonist or antagonist activity.

11. The functional ligand of claim 7, further comprising an affinity handle.

12. The functional ligand of claim 8, wherein said receptor comprises a stem cell factor receptor.

13. The functional ligand of claim 12, wherein said target molecule comprises stem cell factor.

14. The functional ligand of claim 9, wherein said nucleic acid substantially mimics the functional activity of said native ligand.

15. A method for culturing cells comprising:

a) contacting a library of nucleic acids with target cells;

b) partitioning non-binding members of said library from binding members of said library;

c) selectively displacing binding members of the library utilizing at least a molecule that natively binds to a cell-signaling receptor of said target cells;

d) collecting displaced members of the library;

e) applying displaced members of the library to said target cells and repeating steps c and d for a selected number of rounds of selection;

f) screening members of the library remaining from the said number of rounds of selection for functional activity against said target cells in comparison to said natively binding molecule; and

g) culturing target cells utilizing at least one screened member of said library to apply said functional activity to said target cells.

16. The method of claim 15, wherein said target cells comprise stem cells.

17. The method of claim 16, wherein said cell-signaling receptor comprises stem cell factor receptor.

18. The method of claim 17, wherein said natively binding molecule comprises stem cell factor.

19. The method of claim 18, wherein screening for functional activity comprises comparing the functional activity of the displaced members against the activity of stem cell factor.

20. The method of claim 15, further comprising amplifying displaced members of said library between steps d and e.

21. The method of claim 16, wherein said functional activity comprises maintaining a substantially undifferentiated state of said stem cells.

22. The method of claim 15, further comprising contacting said library with a background material and collecting the non-binding members of the library for contacting with said target cells.