Microarray Microcard

• US 20090305238A1
• Filed: 01/22/2007
• Published: 12/10/2009
• Est. Priority Date: 01/23/2006
• Status: Abandoned Application

• Current Assignee: Applied Biosystems LLC (Thermo Fisher Scientific Incorporated)
• Original Assignee: Applera Corporation (Thermo Fisher Scientific Incorporated)
• Inventors: Cox, David M.
• Application Number:
  US11/921,333
• Publication Number:
  US 20090305238A1
• Time in Patent Office: Days
• US Class Current: 435/6
• CPC Class Codes: B01L 2300/0636 Integrated biosensor, microarrays
• CPC Class Codes: B01L 2300/0806 Standardised forms, e.g. compact disc [CD] format
• CPC Class Codes: B01L 2300/0816 Cards, e.g. flat sample carriers usually with flow in two horizontal directions
• CPC Class Codes: B01L 2300/0864 comprising only one inlet and multiple receiving wells, e.g. for separation, splitting
• CPC Class Codes: B01L 2300/087 Multiple sequential chambers
• CPC Class Codes: B01L 2400/0406 capillary forces
• CPC Class Codes: B01L 2400/0409 centrifugal forces
• CPC Class Codes: B01L 2400/0655 pinch valves
• CPC Class Codes: B01L 2400/0683 mechanically breaking a wall or membrane within a channel or chamber
• CPC Class Codes: B01L 3/5027 by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip B01L3/5023 takes precedence; micromixers B01F33/30; microreactors for synthesis B01J19/0093; microcapillary devices in general B81B1/00
• CPC Class Codes: B01L 3/502738 characterised by integrated valves microvalves F16K99/0001
• CPC Class Codes: B01L 7/52 with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples amplification or hybridisation processes per se C12Q1/68; controlling sequential reactions for synthesis B01J19/0046

Abstract

A fluid processing device is provided that comprises a substrate including a surface and a fluid processing pathway at least partially formed in or on the surface. The fluid processing pathway can comprise a channel, a reaction region in fluid communication with the channel, a microarray in fluid communication with the channel, and optionally a deformable valve. The microarray can comprise binding and/or detection sites, and each site can comprise a binding moiety. A method and a system using the fluid processing device, are also provided.

Claims

1. A fluid processing device comprising:

a substrate comprising a surface; and

at least one fluid processing pathway at least partially formed in or on the surface, the fluid processing pathway comprising,

a channel comprising a first end and a second end,

a reaction region in fluid communication with the first end,

a deformable valve adapted to open and provide fluid communication through the channel,

a fluid retainment region in fluid communication with the second end, and

a microarray disposed in the fluid retainment region, the microarray comprising a plurality of binding sites, each binding site comprising an immobilized moiety,

wherein at least two of the binding moieties are different from one another.

2. The fluid processing device of claim 1, wherein the reaction region has a volume of from about 1 μ

l to about 100 μ

l.

4. The fluid processing device of claim 1, wherein the binding moiety of one of the binding sites comprises an oligonucleotide.

5. The fluid processing device of claim 1, wherein the binding moiety comprises at least one of a 5′

-exonuclease probe, a stem-loop beacon probe, or a stemless beacon probe.

6. The fluid processing device of claim 1, wherein the at least one fluid processing pathway comprises a plurality of fluid processing pathways, each fluid processing pathway comprising a respective reaction chamber.

7. The fluid processing device of claim 1, wherein binding sites have a density of at least one binding site per 10 μ

m².

3. The fluid processing device of claim 3, wherein the at least one reagent comprises a reagent for a nucleic acid amplification reaction.

8. A method comprising:

loading a sample into a reaction region of a fluid processing device;

reacting the sample in the reaction region to form a reaction product;

opening a deformable valve along a fluid communication leading away from the reaction region;

moving the reaction product from the reaction region through the fluid communication and into a hybridization array; and

reacting the reaction product with binding moieties of the microarray.

9. The method of claim 8, wherein the moving of the reaction product comprises spinning the fluid processing device to centrifugally propel the reaction product.

10. The method of claim 8, further comprising detecting a detectable characteristic resulting from the reaction of the reaction product with the binding moieties.

11. The method of claim 10, wherein detecting comprises detecting luminescence or fluorescence emissions from at least one binding site of a plurality of binding sites.

12. The method of claim 11, wherein detecting comprises illuminating at least one the plurality of binding sites with at least one excitation beam.

13. The method of claim 8, wherein the sample comprises at least one oligonucleotide.

14. The method of claim 8, wherein the reaction product comprises at least one of a nucleotide amplification reaction product and a sequencing reaction product.

15. The method of claim 8, further comprising purifying the reaction product prior to moving the reaction product into the microarray.

16. A system, comprising:

a platen;

a fluid processing device holder disposed in the platen and adapted to hold at least one fluid processing device, comprising,

a substrate comprising a surface; and

at least one fluid processing pathway at least partially formed in or on the surface, the fluid processing pathway comprising;

a channel comprising a first end and a second end,

a reaction region in fluid communication with the first end,

a deformable valve adapted to open and provide fluid communication through the channel,

a fluid retainment region in fluid communication with the second end, and

a microarray disposed in the fluid retainment region, the microarray comprising a plurality of binding sites, each binding site comprising an binding moiety,

wherein at least two of the binding moieties are different from one another; and

a detector adapted to detect a detectable characteristic from at least one of the binding sites.

17. The system of claim 16, wherein the platen comprises an axis of rotation and the system further comprises a drive to spin the platen about the axis of rotation.

18. The system of claim 16, wherein the detectable characteristic comprises a fluorescent emission from at least one of the binding sites.

20. The system of claim 16, further comprising a plurality of excitation sources, each excitation source adapted to emit a respective excitation beam having a half-peak wavelength range substantially different than a half-peak wavelength range of other excitation sources in the plurality of excitation sources, and each excitation source is adapted to direct the respective excitation beam to at least one of the binding sites.

19. The system of claim 41, further comprising an excitation source adapted to emit an excitation beam directed to at least one of the binding sites.