Determining Age Ranges of Skin Samples

• US 20100086501A1
• Filed: 08/28/2009
• Published: 04/08/2010
• Est. Priority Date: 08/28/2008
• Status: Abandoned Application

• Current Assignee: DermTech International
• Original Assignee: DermTech International
• Inventors: Naughton, Gail K., Chang, Sherman H.
• Application Number:
  US12/550,060
• Publication Number:
  US 20100086501A1
• Time in Patent Office: Days
• US Class Current: 424/59
• CPC Class Codes: A61Q 17/04 Topical preparations for affording protection against sunlight or other radiation; Topical sun tanning preparations
• CPC Class Codes: A61Q 19/00 Preparations for care of the skin
• CPC Class Codes: A61Q 19/08 Anti-ageing preparations
• CPC Class Codes: C12Q 1/6876 Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
• CPC Class Codes: C12Q 1/6883 for diseases caused by alterations of genetic material
• CPC Class Codes: C12Q 2600/148 Screening for cosmetic compounds
• CPC Class Codes: C12Q 2600/156 Polymorphic or mutational markers
• CPC Class Codes: C12Q 2600/158 Expression markers
• CPC Class Codes: G01N 2500/04 Screening involving studying the effect of compounds C directly on molecule A (e.g. C are potential ligands for a receptor A, or potential substrates for an enzyme A)
• CPC Class Codes: G01N 2800/20 Dermatological disorders
• CPC Class Codes: G01N 33/5308 for analytes not provided for elsewhere, e.g. nucleic acids, uric acid, worms, mites
• CPC Class Codes: G01N 33/6881 from skin

Abstract

The present invention provides methods for characterizing a skin sample of a subject as belonging to an age range by analyzing nucleic acid or protein molecules obtained from the subject. The methods include analyzing expression or mutations in epidermal samples, of one or more skin markers. The methods can include the use of a microarray to analyze gene or protein profiles from a sample and compare them with a known skin age index. Therapeutic and cosmetic formulations are also provided herein.

Claims

1. A method for determining the age range of a skin sample of a subject comprising analyzing nucleic acid from one or more genes listed in Table 1, Table 2, Table 3, or any combination thereof, in a sample of the skin from the subject, thereby determining the age range of the skin of the subject.

2. The method of claim 1, wherein the nucleic acid is RNA.

3. The method of claim 1, wherein analyzing the nucleic acid comprises detecting one or more mutations in the nucleic acid sequence of the nucleic acid.

4. The method of claim 3, wherein the one or more mutations are selected from the group consisting of a substitution, a deletion, and an insertion.

5. The method of claim 1, further comprising amplifying the nucleic acid obtained from the sample prior to analyzing.

6. The method of claim 1, wherein the sample is obtained by applying an adhesive tape to a target area of skin in a manner sufficient to isolate the sample adhering to the adhesive tape.

7. The method of claim 1, further comprising using the characterizing to determine a treatment regimen for the symptoms of photoaging or chronoaging of the subject.

8. The method of claim 3, wherein the isolated nucleic acid or an amplification product thereof, is applied to a microarray.

9. The method of claim 8, wherein an expression profile is detected using a microarray.

10. The method of claim 1, wherein the sample is obtained from a biopsy taken at the site of the skin lesion or surrounding margin.

11. The method of claim 6, wherein the tape comprises a rubber adhesive on a polyurethane film.

12. The method of claim 6, wherein about one to ten adhesive tapes or one to ten applications of a tape are applied and removed from the skin.

13. The method of claim 6, wherein about one to five adhesive tapes or one to five applications of a tape are applied and removed from the skin.

14. The method of claim 6, wherein the method further comprises taking a biopsy of the target area of the skin.

15. The method of claim 3, wherein the analyzing is performed in situ.

32. The method of claim 1, wherein the subject is human.

33. The method of claim 1, wherein the sample is an epidermal sample.

16. A method of identifying an age range for a skin sample comprising analyzing a nucleic acid from the sample as compared with one or more genes listed in Table 1, Table 2, Table 3, or any combination thereof, and identifying the age range of the skin based on the analysis.

17. The method of claim 16, wherein the nucleic acid is RNA.

18. The method of claim 16, wherein analyzing the nucleic acid comprises detecting one or more mutations in the nucleic acid sequence of the nucleic acid.

19. The method of claim 16, wherein the sample is obtained by applying an adhesive tape to a target area of skin in a manner sufficient to isolate the sample adhering to the adhesive tape, wherein the sample comprises nucleic acid molecules.

20. The method of claim 16, wherein the sample is obtained from a biopsy taken from a target area of skin from the subject.

21. The method of claim 19, wherein the tape comprises a rubber adhesive on a polyurethane film.

22. The method of claim 16, wherein the method further comprises taking a biopsy of the target area of the skin.

23. A method for determining the age range of skin of a subject comprising detecting an altered level of a target protein in a sample from the subject, as compared to the level of the target protein in a corresponding sample from a subject of known age range, wherein the protein is an expression product of a gene listed in Table 1, Table 2, Table 3, or any combination thereof, thereby determining the age range of the subject.

24. The method of claim 23, wherein the sample is obtained by applying an adhesive tape to a target area of skin in a manner sufficient to isolate the sample adhering to the adhesive tape, wherein the sample comprises cells, and further comprising lysing the cells to extract the target protein.

25. The method of claim 23, wherein the sample is obtained by from a biopsy of a target area of skin.

26. A method for determining the age range of skin of a subject comprising:

a) providing a gene expression profile of a target area of the skin of the subject, wherein the target area of the skin simultaneously expresses a plurality of genes at the protein level that are markers for a specific age range; and

b) comparing the subject'"'"'s gene expression profile to a reference gene expression profile obtained from a corresponding skin sample of known age range, wherein the reference gene expression profile comprises an expression value of one or more target genes listed in Table 1, Table 2, Table 3, or any combination thereof.

27. The method of claim 26, wherein the reference gene expression profile is contained within a database.

28. The method of claim 26, wherein the comparing is carried out using a computer algorithm.

29. A kit for determining the age range of skin in a subject comprising an applicator and one or more probes or primers that selectively bind to one or more of nucleic acid molecules in Table 1, Table 2, Table 3, or any combination thereof, or to a nucleic acid or protein expression product of a nucleic acid molecule in any of Table 1, Table 2, Table 3, or any combination thereof.

30. The kit of claim 29, wherein the kit provides a probe which binds to a portion of a nucleic acid molecule in Table 1, Table 2, Table 3, or any combination thereof.

31. The kit of claim 29, wherein the kit provides one or more primer pairs comprising a forward primer that selectively binds upstream of a gene on one strand and a reverse primer that selectively binds upstream of a gene on a complementary strand, wherein the gene is any gene listed in Table 1, Table 2, Table 3, or any combination thereof.

34. A cosmetic formulation containing agents for reducing or increasing expression of genes in Table 1, Table 2, Table 3, or any combination thereof.

35. The cosmetic formulation of claim 34, wherein the cosmetic formulation comprises an emulsion, a cream, a lotion, a solution, an anhydrous base, a paste, a powder, a gel, or an ointment.

36. The cosmetic formulation of claim 34, wherein the formulation is comprised in an anti-aging product or a moisturizing product.

37. The cosmetic formulation of claim 34, wherein the formulation further comprises one or more of estradiol;

progesterone;

pregnanalone;

coenzyme Q10;

methylsolanomethane (MSM);

copper peptide (copper extract);

plankton extract (phytosome);

glycolic acid;

kojic acid;

ascorbyl palmitate;

all trans retinol;

azaleic acid;

salicylic acid;

broparoestrol;

estrone;

adrostenedione; and

androstanediols.

38. The cosmetic formulation of claim 34, wherein the formulation further comprises a sunblock.