SYNTHESIS OF BORONIC ESTER AND ACID COMPOUNDS
First Claim
Patent Images
1. A composition comprising an ether solvent that has low miscibility with water and at least about ten moles of a boronic ester compound of formula (I):
- wherein;
R1 is an optionally substituted aliphatic or aromatic group;
R2 is hydrogen, a nucleofugic group, or an optionally substituted aliphatic or aromatic group;
R3 is a nucleofugic group or an optionally substituted aliphatic or aromatic group; and
R4 and R5 are together an optionally substituted aliphatic group, and R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted 5- to 10-membered ring having 0 additional ring heteroatoms; and
none of the variables R1-R5 is substituted with a heteroaromatic group;
wherein the solubility of water in the ether solvent that has low miscibility with water is less than about 5% w/w; and
wherein the ether solvent that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture.
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Abstract
The invention relates to the synthesis of boronic ester and acid compounds. More particularly, the invention provides improved synthetic processes for the large-scale production of boronic ester and acid compounds, including the peptide boronic acid proteasome inhibitor bortezomib.
16 Citations
56 Claims
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1. A composition comprising an ether solvent that has low miscibility with water and at least about ten moles of a boronic ester compound of formula (I):
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wherein; R1 is an optionally substituted aliphatic or aromatic group; R2 is hydrogen, a nucleofugic group, or an optionally substituted aliphatic or aromatic group; R3 is a nucleofugic group or an optionally substituted aliphatic or aromatic group; and R4 and R5 are together an optionally substituted aliphatic group, and R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted 5- to 10-membered ring having 0 additional ring heteroatoms; and none of the variables R1-R5 is substituted with a heteroaromatic group; wherein the solubility of water in the ether solvent that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture. - View Dependent Claims (4, 5, 6, 7, 8)
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2. A composition comprising an ether solvent that has low miscibility with water and at least about ten moles of a boronic ester compound of formula (I):
wherein; R1 is an optionally substituted aliphatic or aromatic group; R2 is hydrogen, a nucleofugic group, or an optionally substituted aliphatic or aromatic group; R3 is a nucleofugic group or an optionally substituted aliphatic or aromatic group; and R4 and R5 are together an optionally substituted aliphatic group, and R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted to 10-membered ring having 0 additional ring heteroatoms; and none of the variables R1-R5 is substituted with a heteroaromatic group; wherein the carbon atom to which R1, R2, and R3 are attached is a chiral center, having a diastereomeric ratio of at least about 96;
4, relative to a chiral center in the R4-R5 chiral moiety;wherein the solubility of water in the ether solvent that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture.
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3. A composition comprising an ether solvent that has low miscibility with water and at least about ten moles of a boronic ester compound of formula (I):
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wherein; R1 is an optionally substituted aliphatic or aromatic group; R2 is hydrogen, a nucleofugic group, or an optionally substituted aliphatic or aromatic group; R3 is a nucleofugic group or an optionally substituted aliphatic or aromatic group; and R4 and R5 are together an optionally substituted aliphatic group, and R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted 5- to 10-membered ring having 0 additional ring heteroatoms; and none of the variables R1-R5 is substituted with a heteroaromatic group; wherein the carbon atom to which R1, R2, and R3 are attached is a chiral center, having an epimeric ratio of at least about 96;
4;wherein the solubility of water in the ether solvent that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture. - View Dependent Claims (10, 11, 12, 13)
(c) R2 is hydrogen; and (d) R1 is C1-4 aliphatic.
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9. A composition comprising at least about ten moles of a boronic ester compound of formula (I):
wherein; R1 is an optionally substituted aliphatic or aromatic group; R2 is hydrogen, a nucleofugic group, or an optionally substituted aliphatic or aromatic group; R3 is a nucleofugic group or an optionally substituted aliphatic or aromatic group; and R4 and R5 are together an optionally substituted aliphatic group, and R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted 5- to 10-membered ring having 0 additional ring heteroatoms; and none of the variables R1-R5 is substituted with a heteroaromatic group; wherein the carbon atom to which R1, R2, and R3 are attached is a chiral center, having a diastereomeric ratio of at least about 96;
4, relative to a chiral center in the R4-R5 chiral moiety;wherein the boronic ester compound of formula (I) constitutes at least about 70% w/w of the composition; wherein the solubility of water in the ether solvent that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture.
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14. A large-scale process for preparing a boronic ester compound of formula (I):
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wherein; R1 is an optionally substituted aliphatic or aromatic group; R2 is hydrogen, a nucleofugic group, or an optionally substituted aliphatic or aromatic group; R3 is a nucleofugic group or an optionally substituted aliphatic or aromatic group; and R4 and R5 are together an optionally substituted aliphatic group, and R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted 5- to 10-membered ring having 0 additional ring heteroatoms; and none of the variables R1-R5 is substituted with a heteroaromatic group; said process comprising; (a) providing a solution comprising; (i) a boronic ester of formula (III); wherein R1, R4, and R5 are as defined above; and (ii) an ether solvent that has low miscibility with water, wherein the solubility of water in the ether solvent that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture; (b) treating the solution with a reagent of formula (IV); to form a boron “
ate”
complex of formula (II);where Y is a nucleofugic group; M+ is a cation; and each of R1 to R5 are as defined above; and (c) contacting the boron “
ate”
complex of formula (II) with a Lewis acid under conditions that afford the boronic ester compound of formula (I), said contacting step being conducted in a reaction mixture comprising;(i) a coordinating ether solvent that has low miscibility with water;
or(ii) an ether solvent that has low miscibility with water and a coordinating co-solvent, provided that the coordinating co-solvent constitutes no more than about 20% v/v of the reaction mixture; wherein the solubility of water in the ether solvent in (i) or (ii) that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent in (i) or (ii) that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture.
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15. A large-scale process for preparing a boronic ester compound of formula (I):
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wherein; R1 is an optionally substituted aliphatic or aromatic group; R2 is hydrogen, a nucleofugic group, or an optionally substituted aliphatic or aromatic group; R3 is a nucleofugic group or an optionally substituted aliphatic or aromatic group; and R4 and R5 are together an optionally substituted aliphatic group, and R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted 5- to 10-membered ring having 0 additional ring heteroatoms; and none of the variables R1-R5 is substituted with a heteroaromatic group; said process comprising; (a) providing a solution comprising; (i) a boronic ester of formula (III); wherein R1, R4, and R5 are as defined above; (ii) a compound of formula (V); where Y is a nucleofugic group, and R2 and R3 are as defined above; and (iii) a solvent comprising; (aa) a coordinating ether solvent that has low miscibility with water;
or(bb) an ether solvent that has low miscibility with water and a coordinating co-solvent, provided that the coordinating co-solvent constitutes no more than about 20% v/v of the reaction mixture; wherein the solubility of water in the ether solvent in (aa) or (bb) that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent in (aa) or (bb) that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture; (b) treating the solution of step (a) with a strong, sterically hindered base to form a boron “
ate”
complex of formula (II);where M+ is a cation derived from the base, and each of Y and R1 to R5 are as defined above; and (c) contacting the boron “
ate”
complex of formula (II) with a Lewis acid in a solution comprising an ether solvent that has low miscibility with water to form the boronic ester compound of formula (I), wherein the solubility of water in the ether solvent that has low miscibility with water is less than about 5% w/w; andwherein the ether solvent that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture. - View Dependent Claims (17)
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16. A large-scale process for preparing a boronic ester compound of formula (I):
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wherein; R1 is an optionally substituted aliphatic or aromatic group; R2 is hydrogen, a nucleofugic group, or an optionally substituted aliphatic or aromatic group; R3 is a nucleofugic group or an optionally substituted aliphatic or aromatic group; and R4 and R5 are together an optionally substituted aliphatic group, and R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted 5- to 10-membered ring having 0 additional ring heteroatoms; and none of the variables R1-R5 is substituted with a heteroaromatic group; said process comprising; (a) providing a solution comprising; (i) a boronic acid compound of formula (VI); wherein R1 is as defined above; (ii) a compound of formula HO—
R4-R5—
OH, wherein R4 and R5 are as defined above; and(iii) an organic solvent that forms an azeotrope with water; (b) heating the solution of step (a) at reflux, with azeotropic removal of water, to form a boronic ester of formula (III); wherein R1, R4, and R5 are as defined above; (c) providing a solution comprising; (i) the boronic ester of formula (III); (ii) a compound of formula (V); wherein Y is a nucleofugic group, and R2 and R3 are as defined above; and (iii) a solvent comprising; (aa) a coordinating ether solvent that has low miscibility with water;
or(bb) an ether solvent that has low miscibility with water and a coordinating co-solvent, provided that the coordinating co-solvent constitutes no more than about 20% v/v of the reaction mixture; wherein the solubility of water in the ether solvent in (aa) or (bb) that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent in (aa) or (bb) that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture; (d) treating the solution from step (c) with a strong, sterically hindered base to form a boron “
ate”
complex of formula (If);where M+ is a cation derived from the base, and each of Y and R1 to R5 are as defined above; and (e) contacting the boron “
ate”
complex of formula (II) with a Lewis acid in a solution comprising an ether solvent that has low miscibility with water to form the boronic ester compound of formula (I), wherein the solubility of water in the ether solvent that has low miscibility with water is less than about 5% w/w; andwherein the ether solvent that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture. - View Dependent Claims (18, 19, 20, 21)
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22. A large-scale process for preparing an aminoboronic ester compound of formula (VII):
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or an acid addition salt thereof, wherein; R1 is an optionally substituted aliphatic or aromatic group; and R4 and R5 are together an optionally substituted aliphatic group, and R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted 5- to 10-membered ring having 0 additional ring heteroatoms; and none of the variables R1-R5 is substituted with a heteroaromatic group; said process comprising; (a) providing a boron “
ate”
complex of formula (II);where Y is a nucleofugic group; M+ is a cation; R2 is hydrogen; R3 is a nucleofugic group; and each of R1, R4, and R5 are as defined above; (b) contacting the boron “
ate”
complex of formula (II) with a Lewis acid under conditions that afford the boronic ester compound of formula (I);where each of R1 to R5 is as defined above, said contacting step being conducted in a reaction mixture comprising; (i) a coordinating ether solvent that has low miscibility with water;
or(ii) an ether solvent that has low miscibility with water and a coordinating co-solvent, provided that the coordinating co-solvent constitutes no more than about 20% v/v of the reaction mixture; wherein the solubility of water in the ether solvent in (i) or (ii) that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent in (i) or (ii) that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture; (c) treating the boronic ester compound of formula (I) with a reagent of formula M1-N(Si(R6)3)2, where M1 is an alkali metal and each R6 independently is selected from the group consisting of alkyl, aralkyl, and aryl, where the aryl or aryl portion of the aralkyl is optionally substituted, to form a byproduct of formula M1-R3 and a compound of formula (VIII); wherein each G is —
Si(R6)3 and R1 to R5 are as defined above; and(d) removing the G groups to form a compound of formula (VII); or an acid addition salt thereof. - View Dependent Claims (23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36)
wherein; P1 is an amino group blocking moiety; R7 is selected from the group consisting of hydrogen, C1-10aliphatic, optionally substituted C6-10aryl, or C1-6aliphatic-R8; and R8 is selected from the group consisting of alkoxy, alkylthio, optionally substituted aryl, heteroaryl, and heterocyclyl groups, and optionally protected amino, hydroxy, and guanidino groups; and X is OH or a leaving group; to form a compound of formula (X); wherein each of P1, R1, R4, R5, and R7 is as defined above.
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35. The process of claim 34, wherein P1 is a cleavable protecting group.
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36. The process of claim 35, further comprising the steps:
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(f) cleaving the protecting group P1 to form a compound of formula (XI); or an acid addition salt thereof, wherein each of R1, R4, R5, and R7 is as defined above; (g) coupling the compound of formula (XI) with a reagent of formula P2—
X, wherein P2 is an amino group blocking moiety and X is a leaving group, to form a compound of formula (XII);wherein each of P2, R1, R4, R5, and R7 are as defined above; and (h) deprotecting the boronic acid moiety to form a compound of formula (XIII); or a boronic acid anhydride thereof, wherein each of P1, R1, and R7 are as defined above.
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37. A large-scale process for preparing an aminoboronic ester compound of formula (VIIa) or (VIIb):
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or an acid addition salt thereof, wherein; R1 is an optionally substituted aliphatic, aromatic, or heteroaromatic group; and R4 and R5, taken together with the intervening oxygen and boron atoms, form an optionally substituted chiral cyclic boronic ester; said process comprising; (a) providing a boron “
ate”
complex of formula (IIa) or (ITh);where Y is a nucleofugic group; M+ is a cation; R2 is hydrogen; R3 is a nucleofugic group; and R4 and R5 are as defined above; (b) contacting the boron “
ate”
complex of formula (IIa) or (IIb) with a Lewis acid under conditions that afford a boronic ester compound of formula (Ia) or (Ib);where each of R1 to R5 is as defined above, said contacting step being conducted in a reaction mixture comprising; (i) a coordinating ether solvent that has low miscibility with water;
or(ii) an ether solvent that has low miscibility with water and a coordinating co-solvent, provided that the coordinating co-solvent constitutes no more than about 20% v/v of the reaction mixture; wherein the solubility of water in the ether solvent in (i) or (ii) that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent in (i) or (ii) that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture; (c) treating the boronic ester compound of formula (Ia) or (Ib) with a reagent of formula M1-N(G)2, where M1 is an alkali metal and each G is an amino group protecting moiety, to form a compound of formula (VIIIa) or (VIIIb); wherein each G and R1 to R5 are as defined above; and (d) removing the G groups to form a compound of formula (VIIa) or (VIIb); or an acid addition salt thereof.
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38. A large-scale process for forming a compound of formula (XIV):
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or a boronic acid anhydride thereof, said process comprising; (a) providing a boron “
ate”
complex of formula (XV);wherein; R3 is a nucleofugic group; Y is a nucleofugic group; and M+ is an alkali metal; (b) contacting the boron “
ate”
complex of formula (XV) with a Lewis acid under conditions that afford a boronic ester compound of formula (XVI);said contacting step being conducted in a reaction mixture comprising an ether solvent that has low miscibility with water, wherein the solubility of water in the ether solvent that has low miscibility with water is less than about 5% w/w, and wherein the ether solvent that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture; (c) treating the boronic ester compound of formula (XVI) with a reagent of formula M1-N(G)z, where M1 is an alkali metal and each G individually or together is an amino group protecting group, to form a compound of formula (XVII); (d) removing the G groups to form a compound of formula (XVIII); or an acid addition salt thereof; (e) coupling the compound of formula (XVIII) with a compound of formula (XIX); wherein; P1 is a cleavable amino group protecting moiety; and X is OH or a leaving group; to form a compound of formula (XX); wherein P1 is as defined above; (f) removing the protecting group P1 to form a compound of formula (XXI); or an acid addition salt thereof; (g) coupling the compound of formula (XXI) with a reagent of formula (XXII) wherein X is a OH or a leaving group, to form a compound of formula (XXIII); (h) deprotecting the boronic acid moiety to form the compound of formula (XIV) or a boronic acid anhydride thereof. - View Dependent Claims (39, 40, 41, 42, 43, 44, 55)
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55. A composition comprising at least one kilogram of a compound of formula (XXIV):
wherein the compound of formula (XXIV) is prepared according to the process of claim 38 or 45.
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45. A large-scale process for forming a compound of formula (XIV):
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or a boronic acid anhydride thereof, comprising the steps; (aa) coupling a compound of formula (XVIII); or an acid addition salt thereof, with a compound of formula (XIX); wherein; P1 is a cleavable amino group protecting moiety; and X is OH or a leaving group; to form a compound of formula (XX); wherein P′
is as defined above, said coupling step (aa) comprising the steps;(i) coupling the compound of formula (XVIII) with a compound of formula (XIX) wherein X is OH in the presence of 2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium tetrafluoroborate (TBTU) and a tertiary amine in dichloromethane; (ii) performing a solvent exchange to replace dichloromethane with ethyl acetate; and (iii) performing an aqueous wash of the ethyl acetate solution; (bb) removing the protecting group P1 to form a compound of formula (XXI); or an acid addition salt thereof, said protecting group removing step (bb) comprising the steps; (i) treating the compound of formula (XX) with HCl in ethyl acetate; (ii) adding heptane to the reaction mixture; and (iii) isolating by crystallization the compound of formula (XXI) as its HCl addition salt; (cc) coupling the compound of formula (XXI) with a reagent of formula (XXII) wherein X is a OH or a leaving group, to form a compound of formula (XXIII); said coupling step (cc) comprising the steps; (i) coupling the compound of formula (XXI) with 2-pyrazinecarboxylic acid in the presence of TIBTU and a tertiary amine in dichloromethane; (ii) performing a solvent exchange to replace dichloromethane with ethyl acetate; and (iii) performing an aqueous wash of the ethyl acetate solution; and (dd) deprotecting the boronic acid moiety to form the compound of formula (XIV) or a boronic acid anhydride thereof, said deprotecting step (dd) comprising the steps; (i) providing a biphasic mixture comprising the compound of formula (XXIII), an organic boronic acid acceptor, a lower alkanol, a C5-8 hydrocarbon solvent, and aqueous mineral acid; (ii) stirring the biphasic mixture to afford the compound of formula (XIV); (iii) separating the solvent layers; and (iv) extracting the compound of formula (XIV), or a boronic acid anhydride thereof, into an organic solvent. - View Dependent Claims (46, 47, 48)
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49. A large-scale process for forming a compound of formula (XIV):
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or a boronic acid anhydride thereof. The process comprises the steps; (a) providing a boron “
ate”
complex of formula (XV);wherein; R3 is a nucleofugic group; Y is a nucleofugic group; and M+ is an alkali metal; (b) contacting the boron “
ate”
complex of formula (XV) with a Lewis acid under conditions that afford a boronic ester compound of formula (XVI);said contacting step being conducted in a reaction mixture comprising; (i) a coordinating ether solvent that has low miscibility with water;
or(ii) an ether solvent that has low miscibility with water and a coordinating co-solvent, provided that the coordinating co-solvent constitutes no more than about 20% v/v of the reaction mixture; wherein the solubility of water in the ether solvent in (i) or (ii) that has low miscibility with water is less than about 5% w/w; and wherein the ether solvent in (1) or (ii) that has low miscibility with water constitutes at least about 70% v/v of the reaction mixture; (c) treating the boronic ester compound of formula (XVI) with a reagent of formula M1-N(Si(R6)3)2, where M1 is an alkali metal and each R6 independently is selected from the group consisting of alkyl, aralkyl, and aryl, where the aryl or aryl portion of the aralkyl is optionally substituted, to form a compound of formula (XVII); wherein each G is —
Si(R6)3;(d) removing the (R6)3Si groups to form a compound of formula (XVIII); or an acid addition salt thereof; (e′
) coupling the compound of formula (MR) with a compound of formula (XIXa);wherein X is OH or a leaving group, to form a compound of formula (XXIII); (f′
) deprotecting the boronic acid moiety to form the compound of formula (XIV) or a boronic acid anhydride thereof.- View Dependent Claims (50, 51, 52, 53, 54)
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56. A composition comprising at least one kilogram of a compound of formula (XXIV):
wherein the compound of formula (XXIV) constitutes at least 99% w/w of the composition.
Specification