Optical Apparatus

• US 20110071035A1
• Filed: 11/11/2010
• Published: 03/24/2011
• Est. Priority Date: 01/31/1997
• Status: Active Grant

• Current Assignee: XY, LLC (Inguran LLC)
• Original Assignee: XY, LLC (Inguran LLC)
• Inventors: Sharpe, Johnathan, Schaare, Peter Niven
• Granted Patent: US 8,975,035 B2
• Time in Patent Office: Days
• US Class Current: 506/7
• CPC Class Codes: G01N 15/1434 Optical arrangements
• CPC Class Codes: G01N 15/1436 the optical arrangement forming an integrated apparatus with the sample container, e.g. a flow cell
• CPC Class Codes: G01N 15/1459 the analysis being performed on a sample stream
• CPC Class Codes: G01N 15/149 specially adapted for sorting particles, e.g. by their size or optical properties
• CPC Class Codes: G01N 2015/1452 Adjustment of focus; Alignment
• CPC Class Codes: G01N 2021/6469 Cavity, e.g. ellipsoid
• CPC Class Codes: G01N 21/49 within a body or fluid
• CPC Class Codes: G02B 5/04 Prisms

Abstract

A method, optical apparatus and system for illuminating particles and for detecting emissions from illuminated particles in a flow cytometer. One configuration includes an objective lens coaxially aligned with the flow of particles being analyzed for collecting emissions at a detector.

Claims

1-116. -116. (canceled)

117. A method of selecting a first set of cells from a population of cells including the first set of cells and a second set of cells, the method comprising:

labeling the population of cells so that the first set of cells can be distinguished from the second set of cells;

providing a first flow path having a distal end, a proximal end, an interrogation area disposed between the proximal end and the distal end, and a flow axis;

creating a sheath flow of a sheath fluid through the first flow path, the sheath flow moving toward the proximal end at a first flow rate;

injecting into the sheath flow, at a point upstream from the proximal end, a specimen flow including the population of cells, the specimen flow having initially a second flow rate less than the first flow rate;

providing an excitation energy source, the energy emitted from the excitation energy source acting on individual cells as they pass through the interrogation area and causing emission or transmission of secondary radiation from the cells;

using an objective lens having an optical axis generally coaxially aligned with the flow axis to focus the secondary radiation from the individual cells as the cells pass through the interrogation area;

detecting the focused secondary radiation from the individual cells;

determining, from the detected secondary radiation, whether the individual cells are in the first set or the second set; and

selecting cells determined to be in the first set.

118. The method of claim 117, wherein selecting cells determined to be in the first set comprises one of derivatizing, killing, damaging, modifying, disrupting, or fragmenting cells not determined to be in the first set.

119. The method of claim 117, wherein selecting cells determined to be in the first set comprises:

ejecting the cells in a stream from a nozzle;

creating a plurality of droplets from the stream;

selectively applying a charge to the droplets; and

sorting the droplets according to the charge of each droplet.

120. The method of claim 117, wherein the energy emitted from the excitation energy source passes through the objective lens.

121. The method of claim 117, wherein the cells are sperm cells and further wherein the first set of cells comprises either cells with an X chromosome or cells with a Y chromosome.

122. The method of claim 117, wherein selecting cells determined to be in the first set comprises using a differentiation energy source to irradiate cells not determined to be in the first set.

123. The method of claim 122, wherein the energy emitted from the differentiation energy source passes through the objective lens.

124. The method of claim 123, further comprising:

selecting a combination of a wavelength of the differentiation energy source, the first flow rate, the second flow rate, and the objective lens such that a nominal focal point of the objective lens and a nominal focal point of the differentiation energy source are separated by the distance that the individual cells will travel through the flow path between detecting the focused secondary radiation and using the differentiation energy source to irradiate cells not determined not to be in the first set.

125. The method of claim 117, further comprising providing a second flow path transverse to the flow axis and disposed at the proximal end of the first flow path, such that after passing through the interrogation area and reaching the proximal end of the first flow path, the cells move into the second flow path and away from the interrogation area.

126. The method of claim 117, wherein providing a flow path further comprises providing a flow path formed of a material having a refractive index in the range of 1.30 to 1.40 inclusive.

127. The method of claim 117, further comprising adjusting the refractive index of a solution containing the population of cells such that the refractive index of the solution is within 0.02 of the refractive index of a material forming the flow path.

128. An apparatus for detecting and selectively altering a desired sub-population of cells in a population of specimen cells, the apparatus comprising:

a fluid flow path having;

a first flow section having a flow axis, and a second flow section, the first and second flow sections intersecting at a measurement end of the first flow section;

an interrogation area disposed at or near the measurement end of the first flow section;

a sheath fluid input in fluid flow communication with the fluid flow path;

a specimen input in fluid flow communication with the fluid flow path;

an objective lens having a nominal focal point and an optical axis, and disposed at the measurement end of the first flow section, the objective lens aligned with the first flow section such that the nominal focal point is along the flow axis and in the interrogation area, and such that the optical axis is generally coaxially aligned with the flow axis;

a detector disposed to detect light focused by the objective lens;

a logic routine communicatively coupled to the detector, operable to determine whether a cell in the population of specimen cells is one of the desired sub-population of cells, and further operable to output a signal based on the determination of whether the cell is one of the desired sub-population of cells; and

a controllable energy source communicatively coupled to the logic routine and operable to selectively alter either cells in the desired sub-population of cells or cells not in the desired sub-population of cells according to at least the signal output from the logic routine.

129. The apparatus of claim 128, wherein the controllable energy source selectively alters cells by derivatizing, killing, damaging, modifying, disrupting, or fragmenting one or more cells not determined to be in the desired sub-population.

130. The apparatus of claim 128, further comprising an excitation energy source and wherein energy emitted from the excitation source passes through the objective lens.

131. The apparatus of claim 130, wherein the excitation energy source comprises an attenuator having the controllable energy source as an input.

132. The apparatus of claim 128, wherein energy emitted from the controllable energy source passes through the objective lens.

133. The apparatus of claim 128, further comprising a body in which the flow path is formed.

134. The apparatus of claim 133, further comprising a groove forming the second flow section in a first surface of the body, wherein the measurement end of the first flow section intersects the groove at the first surface.

135. The apparatus of claim 133, further comprising:

a first interior channel through the body, extending from a first surface of the body to a point in the body and forming the first flow section; and

a second interior channel through the body, extending from the point in the body to a second surface of the body.

136. The apparatus of claim 133, wherein the body is formed of a material having a refractive index between 1.30 and 1.40 inclusive.

137. The apparatus of claim 136, wherein the material comprises an amorphous perfluoropolymer, an amorphous fluoropolymer, or a perfluoroalkoxy polymer.

138. The apparatus of claim 128, wherein the objective lens is either a water immersion lens or a water-dipping lens.

139. The apparatus of claim 128, wherein the population of specimen cells comprises sperm cells and wherein the desired population of cells comprises either cells with an X chromosome or cells with a Y chromosome.

140. A system for detecting and selectively altering a desired sub-population of cells in a population of specimen cells, the system comprising:

fluid flow path having a flow axis;

an interrogation area disposed within the fluid flow path;

a sheath fluid input in fluid flow communication with the fluid flow path;

a first pump in fluid flow communication with the sheath fluid input;

a specimen fluid input in fluid flow communication with the fluid flow path;

a second pump in fluid flow communication with the specimen fluid input;

an objective lens having a nominal focal point and an optical axis, and disposed such that the nominal focal point is along the flow axis and in the interrogation area, and such that the optical axis is generally coaxially aligned with the flow axis in the interrogation area;

a detector disposed to detect light focused by the objective lens;

a controllable energy source;

a processor communicatively coupled to a computer-readable storage medium, to the detector, and to the controllable energy source; and

wherein the processor and the controllable energy source cooperate to selectively alter, according to an output from the processor, either cells in the desired sub-population of cells or cells not in the desired sub-population of cells.

141. The system of claim 140, further wherein the processor and the controllable energy source cooperate to selectively alter cells in the desired sub-population of cells by derivatizing, killing, damaging, modifying, disrupting, or fragmenting one or more cells not determined to be in the desired sub-population of cells.

142. The system of claim 140, wherein the energy emitted from the controllable energy source passes through the objective lens.

143. The system of claim 140, further comprising a body formed of a material having a refractive index between 1.30 and 1.40 inclusive.

144. The system of claim 140, wherein the population of specimen cells comprises sperm cells and wherein the desired sub-population is either cells with an X chromosome or cells with a Y chromosome.

145. A method of detecting and selectively altering a desired sub-population of cells in a population of specimen cells, the method embodied in a set of machine-readable instructions executed on a processor and stored on a tangible medium, the method comprising:

controlling the flow of a population of specimen cells through a flow path having a flow axis;

controlling an illumination source to illuminate an interrogation area through which the cells in the population of specimen cells pass;

receiving data from a detector in an optical path having an objective lens, the objective lens having an optical axis and a nominal focal point, the optical axis generally coaxially aligned with the flow axis, the nominal focal point being within the interrogation area;

determining from the received data the presence in the interrogation area of one of the cells in the population of specimen cells;

determining from the received data whether the one of the specimen cells is one of the desired sub-population of cells; and

controlling a cell selection energy source, according to at least the determination of whether the one of the specimen cells is part of the desired sub-population of cells.

146. The method of claim 145, wherein controlling the cell selection energy source comprises:

determining the rate of flow through the interrogation area of the one of the specimen cells; and

selectively irradiating the one of the cells by controlling the cell selection energy source according to the determined rate of flow of the one of the specimen cells through the flow path.

147. The method of claim 145, wherein controlling the cell selection energy source comprises selectively applying a charge to a droplet containing a one of the cells.

148. A system for detecting and selectively altering a desired sub-population of cells in a population of specimen cells, the system comprising:

a flow path having an interrogation area and a flow axis in the interrogation area;

control means for controlling a flow of the population of specimen cells through the flow path;

illumination means for illuminating the specimen cells as they pass through the interrogation area;

an objective lens having an optical axis and a nominal focal point, the optical axis generally coaxially aligned with the flow axis, the nominal focal point being within the interrogation area;

detection means for detecting energy focused by the objective lens and providing data related to the detected energy;

processing means for receiving the data related to the detected energy and for determining whether individual specimen cells passing through the interrogation area are one of the desired sub-population;

cell selection means for selectively irradiating the specimen cells; and

cell selection control means for controlling the cell selection means according to at least the determination of whether the individual specimen cells are one of the desired sub-population.

149. The system of claim 148, wherein the population of specimen cells comprises a population of sperm cells and wherein the desired sub-population of cells comprises:

sperm cells with an X chromosome;

or sperm cells with a Y chromosome.

150. The system of claim 148, wherein energy emitted from the cell selection means passes through the objective lens before reaching the specimen cells.

151. The system of claim 148, wherein at least a part of the flow path is formed of a material having a refractive index between 1.30 and 1.40 inclusive.

152. A process for detecting and selectively altering a desired sub-population of cells in a population of specimen cells, the process comprising:

creating a flow carrying a generally single-file procession of specimen cells through a flow path;

illuminating the specimen cells as the specimen cells pass through an interrogation area in the flow path;

positioning an objective lens such that;

an optical axis of the objective lens is generally coaxial with the flow path, the flow moves through the flow path toward the objective lens, and the objective lens has a nominal focal point in the interrogation area;

detecting a parameter of individual specimen cells as the specimen cells pass through the interrogation area;

interpreting the detected parameter of the individual specimen cells to determine whether the individual specimen cells are one of the desired sub-population;

selectively derivatizing, killing, damaging, modifying, disrupting, or fragmenting one or more of the population of specimen cells according to the determination of whether the individual specimen cells are one of the desired sub-population of cells; and

collecting the resulting population of processed cells.

153. The process of claim 152, wherein the population of specimen cells comprises sperm cells;

wherein the desired sub-population of cells comprises either cells having an X chromosome or cells having a Y chromosome; and

wherein detecting a parameter of the individual specimen cells as the specimen cells pass through the interrogation area comprises detecting the parameter of more than 40,000 specimen cells per second as the cells pass through the interrogation area.

154. The process of claim 153, wherein detecting a parameter of the individual specimen cells as the specimen cells pass through the interrogation area comprises detecting the parameter of more than 75,000 specimen cells per second as the cells pass through the interrogation area.

155. The process of claim 152, wherein detecting a parameter of the individual specimen cells as the specimen cells pass through the interrogation area comprises detecting the parameter of more than 100,000 specimen cells per second as the cells pass through the interrogation area.

156. The process of claim 152, wherein cells determined to be in the desired sub-population are not altered by selectively derivatizing, killing, damaging, modifying, disrupting, or fragmenting the cells, and wherein the resulting population of processed cells comprises a ratio of cells in the desired sub-population of cells to total unaltered cells greater than or equal to 60%.

157. The process of claim 152, wherein cells determined to be in the desired sub-population are altered by selectively derivatizing, killing, damaging, modifying, disrupting, or fragmenting the cells, and wherein the resulting population of processed cells comprises a ratio of cells in the desired sub-population of cells to total altered cells greater than or equal to 60%.

158. The process of claim 152, wherein the cells determined to be in the desired sub-population are not altered by selectively derivatizing, killing, damaging, modifying, disrupting, or fragmenting the cells, and wherein the resulting population of processed cells comprises a ratio of altered cells in the desired sub-population to total cells in the desired sub-population less than or equal to 50%.

159. The process of claim 152, wherein the cells determined to be in the desired sub-population are altered by selectively derivatizing, killing, damaging, modifying, disrupting, or fragmenting the cells, and wherein the resulting population of processes cells comprises a ratio of unaltered cells in the desired sub-population to total cells in the desired sub-population less than or equal to 50%.