BASE SEQUENCE CLUSTER GENERATING SYSTEM, BASE SEQUENCE CLUSTER GENERATING METHOD, PROGRAM FOR PERFORMING CLUSTER GENERATING METHOD, AND COMPUTER READABLE RECORDING MEDIUM ON WHICH PROGRAM IS RECORDED AND SYSTEM FOR PROVIDING BASE SEQUENCE INFORMATION
First Claim
1. A system for providing information about a cluster of child spliced sequences obtained from a parent base sequence comprising a server for receiving a query sequence and a database containing base sequences, wherein said server comprises:
- a subsystem for recording a plurality of spliced sequences, wherein each spliced sequence is a query sequence;
a subsystem for comparing a spliced edit distance between each query sequence and the parent base sequence read from a database with a predetermined maximum acceptable value;
a subsystem for selecting spliced base sequences of which the spliced edit distance between each query sequence and the parent base sequence is not more than said maximum acceptable value to generate a first cluster of child spliced sequences and recording said first cluster in storage a subsystem;
a subsystem for generating a second cluster of child spliced sequences from said first cluster and storing said second cluster; and
a subsystem for sending said second cluster over a network.
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Abstract
Provided is a base sequence cluster generating system, method, and program product for performing cluster generation. The base sequence cluster generating system utilizes a computer system having a database containing base sequences receives a query sequence over. The computer uses spliced base sequences as a query sequence to generate a first cluster including base sequences that are likely to constitute a spliced pair with the query sequence. Spliced alignment is applied to the generated first cluster to generate a second cluster including spliced pairs. The generated second cluster is returned to the requester.
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Citations
20 Claims
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1. A system for providing information about a cluster of child spliced sequences obtained from a parent base sequence comprising a server for receiving a query sequence and a database containing base sequences, wherein said server comprises:
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a subsystem for recording a plurality of spliced sequences, wherein each spliced sequence is a query sequence; a subsystem for comparing a spliced edit distance between each query sequence and the parent base sequence read from a database with a predetermined maximum acceptable value; a subsystem for selecting spliced base sequences of which the spliced edit distance between each query sequence and the parent base sequence is not more than said maximum acceptable value to generate a first cluster of child spliced sequences and recording said first cluster in storage a subsystem; a subsystem for generating a second cluster of child spliced sequences from said first cluster and storing said second cluster; and a subsystem for sending said second cluster over a network. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20)
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Specification