ELECTRICAL SENSOR FOR ULTRASENSITIVE NUCLEIC ACID DETECTION

• US 20120122715A1
• Filed: 03/11/2010
• Published: 05/17/2012
• Est. Priority Date: 03/11/2009
• Status: Abandoned Application

• Current Assignee: Agency For Science Technology and Research
• Original Assignee: Agency For Science Technology and Research
• Inventors: Gao, Zhiqiang, Roy, Somenath, Chen, Xiaojun
• Application Number:
  US13/255,901
• Publication Number:
  US 20120122715A1
• Time in Patent Office: Days
• US Class Current: 506/9
• CPC Class Codes: C12Q 1/6825 Nucleic acid detection involving sensors
• CPC Class Codes: G01N 27/3278 involving nanosized elements, e.g. nanogaps or nanoparticles nanopores G01N33/48721; magnetic beads G01N27/745
• CPC Class Codes: G01N 33/5438 Electrodes

Abstract

The present invention is direct to a sensor for detecting a nucleic acid molecule comprising an electrode arrangement with two electrodes and nucleic acid probes immobilized at the surface of the electrodes. The present invention also refers to a kit and a method of using the sensor or a sensor array. The present invention is further directed to a process of manufacturing a sensor and sensor array.

Claims

1. A sensor for detecting a nucleic acid molecule comprising:

an electrode arrangement comprising a first electrode, a second electrode and an overlapping region, wherein, within the overlapping region;

a part of the second electrode overlaps a part of the first electrode such that a top surface level of the second electrode is higher than a top surface level of the first electrode;

an insulating layer is provided between the first electrode and the second electrode and is contacting the first electrode and second electrode;

a first nucleic acid probe immobilized at the surface of the first electrode; and

a second nucleic acid probe immobilized at the surface of the second electrode.

2. The sensor of claim 1, wherein within the overlapping region the side surface of the second electrode and the insulating layer is aligned with respect to the top surface of the second electrode by an angle of about 90°

±

30°

.

3. The sensor of claim 1, wherein the first and the second electrode are made of a material which is selected from the group consisting of a noble metal, doped silicon, doped poly silicon, silicon germanium, titanium (Ti), tantalum (Ta), tungsten (W), aluminum (Al), chromium (Cr), copper (Cu), a metal alloy and a conducting polymer.

6. The sensor of claim 3, wherein the first and the second electrode are made of the same material or different materials.

7. The sensor of claim 1, wherein the electrode arrangement is arranged on a substrate.

12. The sensor of claim 7, wherein the substrate is further arranged on a semiconducting layer.

20. The sensor of claim 1, wherein an adhesion layer is arranged between the insulating layer and the first electrode and/or between the insulating layer and the second electrode.

24. The sensor of claim 1, wherein the first nucleic acid probe and the second nucleic acid probe have a length of at least 10 nucleotides, or at least 40 nucleotides, or at least 60 nucleotides.

25. The sensor of claim 1, wherein the first nucleic acid probe and the second nucleic acid probe comprise the same or different nucleotide sequence.

27. The sensor of claim 1, wherein the nucleic acid is DNA, RNA or derivatives thereof.

28. The sensor of claim 1, wherein the first nucleic acid probe and/or the second nucleic acid probe are immobilized at the surface of the respective electrode via a chemical linker.

29. The sensor of claim 1, wherein multiple sensors are arranged in a sensor array.

31. A process of manufacturing a sensor for detecting a nucleic acid molecule comprising:

an electrode arrangement comprising a first electrode, a second electrode and an overlapping region, wherein, within the overlapping region;

a part of the second electrode overlaps a part of the first electrode such that a top surface level of the second electrode is higher than a top surface level of the first electrode;

an insulating layer is provided between the first electrode and the second electrode and is contacting the first electrode and second electrode;

a first nucleic acid probe immobilized at the surface of the first electrode; and

a second nucleic acid probe immobilized at the surface of the second electrode,

wherein the process comprises;

providing an electrode arrangement as referred to claim 1 comprising a first electrode and a second electrode; and

immobilizing a first nucleic acid probe at the surface of the first electrode and the second electrode.

32. The process of claim 31, wherein in case the nucleic acid probe immobilized at either the first electrode or second electrode is to be different from the nucleic acid probe immobilized at the respective other electrode, the process further comprises after the step of immobilizing a first nucleic acid probe, the following steps:

stripping of the first nucleic acid probe from the surface of the first electrode or the second electrode by potential cycling of either the first electrode or the second electrode; and

immobilizing a second nucleic acid probe at the surface of the electrode from which the first nucleic acid has not been stripped of.

33. The process of claim 32, wherein the stepped electrode arrangement is manufactured by:

forming a first electrode on a substrate;

forming an insulating layer covering the substrate and the first electrode;

forming a second electrode covering a portion of the substrate covered with the insulating layer;

wherein the second electrode is formed to overlap a portion of the first electrode covered with the insulating layer;

removing the portion of the insulating layer which is not covered by the second electrode.

41. The process of claim 32, wherein the potential cycling is carried out at between about 0.1 to about 1 V.

42. The process of claim 32, wherein the scan rate for potential cycling is about 150 to 250 mV/s or about 200 mV/s.

4-5. -5. (canceled)

8-11. -11. (canceled)

13-19. -19. (canceled)

21-23. -23. (canceled)

26. (canceled)

30. A nucleic acid detection kit comprising:

a sensor for detecting a nucleic acid molecule comprising;

an electrode arrangement comprising a first electrode, a second electrode and an overlapping region, wherein, within the overlapping region;

a part of the second electrode overlaps a part of the first electrode such that a top surface level of the second electrode is higher than a top surface level of the first electrode;

an insulating layer is provided between the first electrode and the second electrode and is contacting the first electrode and second electrode;

a first nucleic acid probe immobilized at the surface of the first electrode; and

a second nucleic acid probe immobilized at the surface of the second electrode;

a solution comprising a metal precursor; and

a solution suitable for chemically reducing the metal precursor.

34-40. -40. (canceled)

43. A method of detecting a target nucleic acid comprising:

providing a sensor for detecting a nucleic acid molecule comprising;

an electrode arrangement comprising a first electrode, a second electrode and an overlapping region, wherein, within the overlapping region;

a part of the second electrode overlaps a part of the first electrode such that a top surface level of the second electrode is higher than a top surface level of the first electrode;

an insulating layer is provided between the first electrode and the second electrode and is contacting the first electrode and second electrode;

a first nucleic acid probe immobilized at the surface of the first electrode; and

a second nucleic acid probe immobilized at the surface of the second electrode,

wherein the sensor comprises two electrodes and wherein nucleic acid sequences are immobilized at the surface of the electrodes which are complementary to the target nucleic acid sequence;

incubating the sensor with a sample fluid suspected to comprise the target nucleic acid;

metallizing the nucleic acid molecules of the sensor; and

carrying out conductance measurements to determine the presence or absence of the target nucleic acid.

44. The method of claim 43, wherein metallizing comprises:

incubating the sensor with a solution comprising a metal precursor;

incubating the sensor with a solution suitable for chemically reducing the metal precursor.