DISPERSION INJECTION METHODS FOR BIOSENSING

• US 20130273564A1
• Filed: 12/16/2011
• Published: 10/17/2013
• Est. Priority Date: 12/23/2010
• Status: Abandoned Application

• Current Assignee: FLIR Systems, Inc. (Teledyne Technologies Incorporated)
• Original Assignee: FLIR Systems, Inc. (Teledyne Technologies Incorporated)
• Inventors: Quinn, John Gerard
• Application Number:
  US13/996,939
• Publication Number:
  US 20130273564A1
• Time in Patent Office: Days
• US Class Current: 435/7.8
• CPC Class Codes: G01N 21/05 Flow-through cuvettes G01N21/09 takes precedence; handling fluid samples G01N1/10
• CPC Class Codes: G01N 21/272 for following a reaction, e.g. for determining photometrically a reaction rate (photometric cinetic analysis)
• CPC Class Codes: G01N 21/45 using interferometric methods; using Schlieren methods
• CPC Class Codes: G01N 21/553 and using surface plasmons fluorescence excitation G01N21/648; enhanced Raman G01N21/658
• CPC Class Codes: G01N 21/7703 using reagent-clad optical fibres or optical waveguides using measurement of total internal reflection or attenuated total reflection G01N21/552; optical fibres or waveguides per se G02B
• CPC Class Codes: G01N 33/53 Immunoassay; Biospecific binding assay; Materials therefor
• CPC Class Codes: G01N 35/00693 Calibration
• CPC Class Codes: G01N 35/08 using a stream of discrete samples flowing along a tube system, e.g. flow injection analysis

Abstract

I Injection methods for determining biomolecular interaction parameters such in label-free biosensing systems are provided. The methods generally relate to analyte sample injection methods that generate well-defined analyte concentration gradients en route to a sensing region possessing an immobilized binding partner. The injections conditions are generally established according to a set of rules that create a dispersion event that can be accurately modeled by a dispersion term. The dispersion term is incorporated into the desired interaction model to provide a reliable representation of the analyte concentration gradient profile, The resulting interaction model is then fitted to a measured binding response curve in order to calculate the interaction parameters. Thus, the injection methods described herein provide a continuous analyte titration allowing a full analyte dose response to be recorded in a single injection in contrast to the standard multiple injection approach

Claims

1. An injection method for determining interaction parameters between an analyte and a ligand in a biosensor, the biosensor comprising a flow channel conduit in fluid communication with a flow cell conduit, said flow cell conduit housing at least a first and second sensing region, said first sensing region having a ligand immobilized thereon, the method comprising the steps of:

obtaining a fluid sample containing an analyte having a starting concentration;

injecting the fluid sample through the flow channel conduit under physical injection conditions sufficient to cause the analyte to undergo a defined dispersion event in route to the flow cell conduit thereby creating an analyte concentration gradient, wherein the analyte concentration gradient comprises a maximum analyte concentration and a minimum analyte concentration that differ by at least one order of magnitude;

measuring the responses elicited by the analyte interacting with the ligand at the first sensing region as the analyte concentration gradient progresses continuously through the flow cell conduit, wherein the measured responses provide a response curve;

incorporating a dispersion term into an interaction model, wherein the dispersion term represents a gradient profile generated by the defined dispersion event thereby providing the analyte concentration present at the first sensing region at any time point during the injection;

and

determining the interaction parameters by fitting the interaction model to the response curve.

6. The method of claim 1 wherein the physical injection conditions include having the fluid sample flow through the flow channel conduit as a laminar flow.

7. The method of claim 1 wherein the physical injection conditions include the fluid sample having a volume that is equal to or less than 10% of the total volume capacity of the flow channel conduit.

9. The method of claim 7 wherein the dispersion term is represented by Equation 1, wherein Equation 1 includes a dispersion coefficient represented by Equation 2.

10. The method of claim 1 wherein the physical injection conditions include the fluid sample having a volume that is from about 50% to 200% of the total volume capacity of the flow channel conduit.

11. The method of claim 10 wherein the dispersion term is represented by Equation 3 for the time points prior to the time required to inject a volume of fluid sample that is equal to the total capacity volume of the flow channel conduit and Equation 4 for time points following the time required to inject a volume of fluid sample that is equal to the total capacity volume of the flow channel conduit, wherein Equations 3 and 4 include a dispersion coefficient represented by Equation 2.

16. The method of claim 1 wherein the physical injection conditions include injecting the fluid sample at an upper flow rate limit that is greater than 3.0 as defined in terms of dimensionless time.

18. The method of claim 1 wherein the physical injection conditions include the flow channel conduit having a total volume capacity from about 10 μ

L to about 2000 μ

L and a diameter from about 0.05 mm to 1.0 mm.

20. The method of claim 1 wherein the fluid sample further comprises a soluble ligand.

21. The method of claim 20 wherein the soluble ligand is the same ligand that is immobilized on the first sensing region.

32. The method of claim 1 wherein the defined dispersion event is consistent with Taylor dispersion.

33. The method of claim 1 further comprising the steps of:

measuring the bulk refractive index of the fluid sample at the second sensing region, said second sensing region being free of immobilized ligand; and

determining a diffusion coefficient of the analyte based on the measured bulk refractive index.

34. The method of claim 33 further comprising the steps of:

determining a molecular weight of the analyte based on the diffusion coefficient; and

determining the presence of analyte aggregates by comparing the molecular weight of the analyte determined by the diffusion coefficient to an expected molecular weight of the analyte.

35. The method of claim 1 further comprising the step of determining a diffusion coefficient of the analyte as a fitted parameter from the response curve.

36. The method of claim 1 wherein the gradient profile generated by the defined dispersion event is known such that the method can be performed without a separate measurement step to determine the gradient profile.

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37. An injection method for determining interaction parameters between an analyte and a ligand in a biosensor, the biosensor comprising a flow channel conduit in fluid communication with a flow cell conduit, said flow cell conduit housing at least a first and a second sensing region, said first sensing region having a ligand immobilized thereon, the method comprising the steps of:

obtaining a fluid sample containing an analyte having a starting concentration;

injecting the fluid sample through the flow channel conduit under physical injection conditions sufficient to cause the analyte to undergo dispersion in route to the flow cell conduit thereby creating an analyte concentration gradient, wherein the analyte concentration gradient comprises a maximum analyte concentration and a minimum analyte concentration that differ by at least one order of magnitude, and wherein the physical injection conditions are consistent with those necessary to produce Taylor dispersion;

measuring the responses elicited by the analyte interacting with the ligand at the first sensing region as the analyte concentration gradient progresses continuously through the flow cell conduit, wherein the measured responses provide a response curve;

incorporating a dispersion term into an interaction model, wherein the dispersion term represents a gradient profile consistent with Taylor dispersion; and

determining the interaction parameters by fitting the interaction model to the response curve.

38. The method of claim 37 further comprising the steps of:

measuring the bulk refractive index of the fluid sample at the second sensing region, said second sensing region free of immobilized ligand; and

determining a diffusion coefficient of the analyte based on the measured bulk refractive index.

39. A computer program for calculating kinetic or binding parameters of an interaction between an analyte and a ligand in a biosensing system comprising:

program code for an interaction model including a dispersion term, wherein the dispersion term is incorporated into the interaction model as the concentration of the analyte injected, wherein the dispersion term encodes a gradient profile produced by dispersion conditions during the injection;

program code for fitting a response curve produced by the interaction between the analyte and ligand to the interaction model; and

program code for calculating the kinetic or binding parameters of the interaction.

40. The computer program of claim 39 wherein the gradient profile is a Gaussian-like gradient, wherein the dispersion term is represented by Equation 1, wherein the dispersion coefficient of Equation 1 is represented by Equation 2, and wherein the interaction model is selected from the group consisting of a combination of Equations 5 and 6, and Equation 6 alone.

41. The computer program of claim 39 wherein the gradient profile is a sigmoidal gradient, wherein the dispersion term is represented by Equation 3 for injection time points prior to the time required to inject a volume of a fluid sample that is equal to the total capacity volume of a flow channel conduit and Equation 4 for injection time points following the time required to inject the volume of fluid sample that is equal to the total capacity volume of the flow channel conduit, wherein Equations 3 and 4 include a dispersion coefficient represented by Equation 2, and wherein the interaction model is selected from the group consisting of a combination of Equations 5 and 6, and Equation 6 alone.