CORRELATIVE DRIFT CORRECTION

• US 20140022373A1
• Filed: 07/22/2013
• Published: 01/23/2014
• Est. Priority Date: 07/20/2012
• Status: Abandoned Application

• Current Assignee: University of Utah Research Foundation (State of Utah)
• Original Assignee: University of Utah Research Foundation (State of Utah)
• Inventors: Kanarowski, Stan, Bewersdorf, Joerg
• Application Number:
  US13/948,035
• Publication Number:
  US 20140022373A1
• Time in Patent Office: Days
• US Class Current: 348/79
• CPC Class Codes: G02B 21/244 using image analysis techniques
• CPC Class Codes: G02B 21/36 arranged for photographic purposes or projection purposes G02B21/18 takes precedenceor digital imaging or video purposes including associated control and data processing arrangements image data processing per se G06T
• CPC Class Codes: G02B 21/361 Optical details, e.g. image relay to the camera or image sensor G02B21/364 takes precedence; illumination details G02B21/06 and subgroups
• CPC Class Codes: G02B 21/367 providing an output produced by processing a plurality of individual source images, e.g. image tiling, montage, composite images, depth sectioning, image comparison

Abstract

A correlative drift correction system can include a sample stage for supporting a sample and a cover slip. The system can include an infrared light source for emitting infrared light to be reflected at the cover slip and an optical sensor for detecting the reflected infrared light. The system can detect drift of the sample using reflected infrared light data from the optical sensor and can determine a drift correction to apply to image data of the sample.

Claims

1. A correlative drift correction system, comprising:

a sample stage configured to support a sample and a cover slip;

an infrared light source configured to emit infrared light to be reflected at the cover slip;

an optical sensor for detecting the reflected infrared light;

a drift detection module configured to detect drift of the sample using reflected infrared light data from the optical sensor; and

a drift correction module configured to determine a drift correction to apply to image data associated with the sample.

2. The system of claim 1, further comprising:

an optical observation system for use in observing the sample on the sample stage;

a visible light source configured to illuminate the sample with visible light for observation; and

a second optical sensor for detecting the light from the sample as the image data.

3. The system of claim 1, further comprising:

an optical observation system for use in observing the sample on the sample stage; and

a visible light source configured to illuminate the sample with visible light for observation;

wherein the optical sensor is further positioned and configured to detect the light from the sample as the image data.

4. The system of claim 1, further comprising a second optical sensor configured to capture the image data, the drift correction module being further configured to apply the drift correction to the image data.

5. The system of claim 1, wherein the sample stage is moveable in three dimensions.

6. The system of claim 5, whereby the sample stage is moveable in a z direction during imaging to acquire a data stack.

7. The system of claim 1, further comprising a focusing module configured to adjust an optical focus on the sample based on the detected drift.

8. The system of claim 7, further comprising an optical observation system for use in observing the sample on the sample stage, and wherein the optical focus is adjusted by physically moving the sample stage.

9. The system of claim 1, further comprising an objective and a medium between the objective and the cover slip, and wherein the infrared light is reflected at an interface between the cover slip and the medium.

10. A correlative drift correction system, comprising:

a sample stage configured to support a sample and a cover slip;

an optical observation system for use in observing the sample on the sample stage;

a visible light source configured to illuminate the sample with visible light for observation;

an infrared light source configured emit infrared light to be reflected at the cover slip;

a first optical sensor for detecting reflected infrared light data;

a second optical sensor for capturing image data of the sample by detecting the visible light;

a drift detection module configured to detect drift of the sample using the reflected infrared light data; and

a drift correction module configured to determine a drift correction to apply to the image data.

11. The system of claim 10, wherein the infrared light source and the visible light source are positioned to originate two original different beam paths, the system further comprising a beam manipulation device for combining the infrared light and the visible light into a single beam path and for subsequently splitting the infrared light and the visible light into multiple different beam paths.

12. The system of claim 11, wherein the multiple different beam paths are respectively directed parallel to the two original different beam paths.

13. The system of claim 11, wherein the multiple different beam paths respectively include a visible light filter and an infrared filter to filter visible light from an infrared light beam path and to filter infrared light from a visible light beam path.

14. A method for correlative drift correction, comprising:

directing infrared light from an infrared light source toward a sample stage supporting a sample and a cover slip;

detecting the infrared light reflected at the cover slip using an optical sensor;

directing visible light from a visible light source toward the sample stage;

capturing visible light image data of the sample;

detecting drift of the sample using reflected infrared light data from the optical sensor; and

applying a drift correction to the visible light image data based on the drift.

15. The method of claim 14, further comprising correcting an optical focus on the sample based on the drift.

16. The method of claim 14, wherein detecting the drift comprises detecting the drift in three dimensions.

17. The method of claim 14, wherein the steps of detecting the drift and applying the drift correction are post-processing steps completed after completion of capturing the visible light image data of the sample.

18. The method of claim 14, wherein capturing the visible light image data of the sample comprises capturing the visible light image data of the sample using the optical sensor.

19. The method of claim 14, wherein capturing the visible light image data of the sample comprises capturing the visible light image data of the sample using a second optical sensor.

20. The method of claim 14, further comprising moving the sample stage in a z direction while capturing the visible light image data of the sample to acquire a data stack.