METHOD, COMPOSITION, AND REAGENT KIT FOR TARGETED GENOMIC ENRICHMENT
First Claim
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1. A composition comprising an engineered stable-binding sequence specific DNA nuclease, comprisingone or more targeting oligonucleotides, wherein:
- said engineered sequence specific DNA nuclease is capable of cutting a target double stranded DNA with sequence specificity greater than eight base pairs long;
said targeting oligonucleotide includes one or more affinity tags ; and
purification of a piece of DNA fragment of interest cut by said sequence specific DNA nuclease is facilitated by said affinity tag.
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Abstract
A composition and method of cleaving a target DNA and isolating a DNA sequence of interest, directed by a targeting oligonucleotide (“ON”) including a DNA binding agent (stable or unstable), is disclosed. The targeting ON binds to the target DNA before or during DNA cleavage. After cleavage, the isolation of the DNA fragment of interest is facilitated by the affinity tag on the targeting ON or an affinity tag attached using either ligation or polymerase extension method.
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19 Claims
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1. A composition comprising an engineered stable-binding sequence specific DNA nuclease, comprising
one or more targeting oligonucleotides, wherein: -
said engineered sequence specific DNA nuclease is capable of cutting a target double stranded DNA with sequence specificity greater than eight base pairs long; said targeting oligonucleotide includes one or more affinity tags ; and purification of a piece of DNA fragment of interest cut by said sequence specific DNA nuclease is facilitated by said affinity tag. - View Dependent Claims (2, 3, 4, 5, 6)
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7. A method for cutting out a DNA fragment of interest from a target double stranded DNA, comprising:
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contacting said target double stranded DNA with a composition comprising an engineered sequence specific DNA nuclease that includes one or more targeting oligonucleotides, wherein said engineered sequence specific DNA nuclease is capable of cutting a double stranded DNA with sequence specificity greater than eight base pairs long; and isolating the DNA fragment of interest. - View Dependent Claims (8, 9, 10, 11, 12)
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13. A reagent kit comprising an engineered stable-binding sequence specific DNA nuclease, wherein:
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said engineered stable-binding sequence specific DNA nuclease is capable of cutting a target double stranded DNA with sequence specificity greater than eight base pairs long; said engineered stable-binding sequence specific DNA nuclease includes one or more targeting oligonucleotides that includes one or more stable-binding agent; at least one component of the engineered stable-binding sequence specific DNA nuclease includes an affinity tag or is bound to a solid support; and purification of a piece of DNA fragment of interest cut by said engineered stable-binding sequence specific DNA nuclease is facilitated by said affinity tag or solid support. - View Dependent Claims (14, 15, 16, 17, 18, 19)
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Specification