MEANS AND METHODS FOR THE DETERMINATION OF (D)-2-HYDROXYGLUTARATE (D2HG) OR (D)-2-HYDROXYADIPIC ACID

• US 20150044716A1
• Filed: 03/01/2013
• Published: 02/12/2015
• Est. Priority Date: 03/01/2012
• Status: Active Grant

• Current Assignee: DKFZ Deutsches Krebsforschungszentrum, Kyocera Corporation, Ruprecht-Karls-Universitã¤T Heidelberg
• Original Assignee: DKFZ Deutsches Krebsforschungszentrum, Ruprecht-Karls-Universitã¤T Heidelberg
• Inventors: Von Deimling, Andreas, Buckel, Wolfgang, Balss, Jrg, Pusch, Stefan
• Granted Patent: US 9,487,815 B2
• Time in Patent Office: Days
• US Class Current: 435/26
• CPC Class Codes: C12Q 1/32 involving dehydrogenase
• CPC Class Codes: C12Q 2326/00 Chromogens for determinations of oxidoreductase enzymes
• CPC Class Codes: G01N 2333/904 acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
• CPC Class Codes: G01N 2458/15 Non-radioactive isotope labels, e.g. for detection by mass spectrometry
• CPC Class Codes: G01N 2800/046 Thyroid disorders
• CPC Class Codes: G01N 2800/22 Haematology
• CPC Class Codes: G01N 2800/28 Neurological disorders
• CPC Class Codes: G01N 33/57407 Specifically defined cancers

Abstract

The present invention relates to a method for detecting (D)-2-hydroxyglutarate or (D)-2-hydroxyadipic acid in a sample, the method comprising the steps of: a) contacting a sample with a reagent mixture, wherein said reagent mixture comprises: (i) a solvent, (ii) a dye having an oxidized state and a reduced state, wherein the reduced state can be distinguished from the oxidized state and wherein the dye is initially present in the oxidized state, (iii) an electron transfer agent, (iv) a (D)-2-hydroxyglutarate dehydrogenase enzyme, and (v) a cofactor; and b) detecting (D)-2-hydroxyglutarate or (D)-2-hydroxyadipic acid by measuring the production of the reduced state of the dye. The invention further pertains to a method for diagnosing and/or monitoring a (D)-2-hydroxy-glutarate-associated disease in a subject. Encompassed by the invention is also a method for diagnosing a mutation in an isocitrate dehydrogenase (IDH) gene or in a (D)-2-hydroxyglutarate (D2HG) dehydrogenase enzyme gene in a subject. In addition, the invention provides for a kit comprising (i) a solvent, (ii) a dye having an oxidized state and a reduced state, wherein the reduced state can be distinguished from the oxidized state and wherein the dye is initially present in the oxidized state, (iii) an electron transfer agent, (iv) a (D)-2-hydroxyglutarate dehydrogenase enzyme, and (v) a cofactor.

Claims

1. A method for detecting (D)-2-hydroxyglutarate or (D)-2-hydroxyadipic acid in a sample, the method comprising:

a) contacting a sample with a reagent mixture, wherein said reagent mixture comprises;

(i) a solvent,

(ii) a dye having an oxidized state and a reduced state, wherein the reduced state can be distinguished from the oxidized state and wherein the dye is initially present in the oxidized state,

(iii) an electron transfer agent,

(iv) a (D)-2-hydroxyglutarate dehydrogenase enzyme, and

(v) a cofactor; and

b) detecting (D)-2-hydroxyglutarate or (D)-2-hydroxyadipic acid by measuring the production of the reduced state of the dye.

7. The method of claim 1, wherein in step a) the reduced state of the dye can be distinguished from the oxidized state of the dye fluorometrically and wherein in step b) the production of the reduced state of the dye is measured via fluorescent spectroscopy.

8. The method of claim 1, wherein in step a) the reduced state of the dye can be distinguished from the oxidized state of the dye colorimetrically and wherein in step b) the production of the reduced state of the dye is measured via visible spectroscopy.

9. The method of claim 1, wherein in step a) the dye is resazurin or a tetrazolium salt, preferably XTT (2,3-bis-(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilide, disodium salt).

10. The method of claim 1, wherein in step a) the electron transfer agent is diaphorase or PMS (N-methyl dibenzopyrazine methyl sulfate) or Meldola blue.

11. The method of claim 1, wherein in step a) the cofactor is NAD+ or NADP+.

12. The method of claim 11, wherein in step a) the enzyme is a mammalian or prokaryotic (D)-2-hydroxyglutarate dehydrogenase.

13. The method of claim 12, wherein the (D)-2-hydroxyglutarate dehydrogenase is from Acidaminococcus fermentans.

14. The method of claim 1, wherein the sample is a tissue, a tissue section, a biopsy, a cell, a cell lysate, a blood sample, a serum sample, a plasma sample or an urine sample.

2. A method for diagnosing and/or monitoring a (D)-2-hydroxyglutarate-associated disease in a subject, the method comprising:

a) contacting a sample of said subject with a reagent mixture, wherein said reagent mixture comprises;

(i) a solvent,

(ii) a dye having an oxidized state and a reduced state, wherein the reduced state can be distinguished from the oxidized state and wherein the dye is initially present in the oxidized state,

(iii) an electron transfer agent,

(iv) a (D)-2-hydroxyglutarate dehydrogenase enzyme, and

(v) a cofactor; and

b) detecting (D)-2-hydroxyglutarate by measuring the production of the reduced state of the dye, thereby diagnosing and/or monitoring a (D)-2-hydroxyglutarate-associated disease in said subject.

3. The method of claim 2, wherein said (D)-2-hydroxyglutarate-associated disease is a tumorous disease selected from the group consisting of diffuse glioma, acute myeloid leukemia (AML), chondrosarcoma, cholangiocarcinoma and thyroid cancer;

or wherein said (D)-2-hydroxyglutarate-associated is glutaric aciduria.

4. The method of claim 3, wherein said diffuse glioma is an astrocytoma WHO grade II (All), astrocytoma WHO grade III (AIII), oligodendroglioma WHO grade II (OII), oligodendroglioma WHO grade III (OIII), oligoastrocytoma WHO grade II (OAII), oligoastrocytoma WHO grade III (OAIII), or secondary glioblastoma.

5. A method for diagnosing a mutation in an isocitrate dehydrogenase (IDH) gene or in a (D)-2-hydroxyglutarate (D2HG) dehydrogenase gene in a subject, the method comprising:

a) contacting a sample of said subject with a reagent mixture, wherein said reagent mixture comprises;

(i) a solvent,

(ii) a dye having an oxidized state and a reduced state, wherein the reduced state can be distinguished from the oxidized state and wherein the dye is initially present in the oxidized state,

(iii) an electron transfer agent,

(iv) a (D)-2-hydroxyglutarate dehydrogenase enzyme, and

(v) a cofactor; and

b) detecting (D)-2-hydroxyglutarate by measuring the production of the reduced state of the dye, wherein the presence of (D)-2-hydroxyglutarate in the sample of the subject is indicative for a mutation in an isocitrate dehydrogenase (IDH) gene or in a (D)-2-hydroxy-glutarate dehydrogenase gene in said subject.

6. The method of claim 5, wherein said mutation in an isocitrate dehydrogenase (IDH) gene is a mutation in the IDH1 gene or IDH2 gene.

15. A kit comprising (i) a solvent, (ii) a dye having an oxidized state and a reduced state, wherein the reduced state can be distinguished from the oxidized state and wherein the dye is initially present in the oxidized state, (iii) an electron transfer agent, a (D)-2-hydroxy-glutarate dehydrogenase enzyme, and a cofactor.