a4B7 INTEGRIN THIOETHER PEPTIDE ANTAGONISTS
First Claim
Patent Images
1. A peptide molecule comprising a structure of Formula (V) (SEQ ID NO:
- 49);
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Abstract
The invention relates to thioether monomer and dimer peptide molecules which inhibit binding of α4β7 to the mucosal addressing cell adhesion molecule (MAdCAM) in vivo.
24 Citations
36 Claims
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1. A peptide molecule comprising a structure of Formula (V) (SEQ ID NO:
- 49);
- View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 17, 23, 26, 28, 30, 34, 35)
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2. The peptide molecule of claim 1, wherein
Xaa1 is absent or any amino acid; -
Xaa2 is absent or any amino acid; Xaa3 is absent or any amino acid; Xaa4 is a 2-methyl-benzoyl moiety capable of forming a thioether bond with Xaa10 or a modified HomoSer, optionally Homo-Ser-Cl; Xaa5 is selected from the group consisting of;
N-Me-Arg, Arg, N-Me-Lys, Phe (4-quanidino), Phe(4-carbamoyl amino), Cit, Phe(4-NH2), N-Me-Homo-Arg, Homo-Arg, Tyr and His;Xaa6 is Ser, Gly, Thr or Ile; Xaa7 is Asp or D-Asp; Xaa8 is selected from the group consisting of;
Thr, Val, Ile, Leu, hLeu, Nle, and Val;Xaa9 is selected from the group consisting of;
Leu, Nle, Cpa, Cba, HomoLeu, Aoc, and N-Me-Leu;Xaa10 is Pen, Cys, D-Cys or HomoCys; and Xaa11 is absent or selected from the group consisting of;
Trp, Phe, 2-Nal, 1-Nal, Tyr, His, Phe(4-F), Phe(4-CF3), Phe (4-CH3), Phe (4-tBu), Bip, Phe(4-COOH), Gly, 3,3-DiPhenylGly, 3,3 diPhenyl Ala, Tic, b-homo-Trp, D-1-Nal, D-2-Nal, Phe(2,4-diCl), Phe(3,4-diCl), Phe(4-carbomyl), Phe(3-Carbomyl), Phe (2-carbomyl), Tyr(Me), HomoPhe, N-Me-Phe, N-Me-Tyr, Sar, Dihydro Trp, Ile, Leu, Arg, Thr, Bpa, Phe(3-Me), Phe(2-Me), Phe(2-CF3), β
-Me-Phe, and Ser,Xaa12 is absent or selected from the group consisting of;
any aromatic amino acid, Glu, D-Glu, homoGlu, Asp, D-homoGlu, D-Asp, Gla, beta-homo-Glu, N-Me-Glu, N-Me-Asp, alpha-H-Glu, corresponding D-amino acid, and isosteres;Xaa13 is absent or any amino acid; and Xaa14 is any amino acid.
-
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3. The peptide molecule of claim 1, wherein
Xaa1 is absent or any amino acid; -
Xaa2 is absent or any amino acid; Xaa3 is absent or any amino acid; Xaa4 is a 2-methylbenzoyl moiety capable of forming a thioether bond with Xaa10 or a modified HomoSer, optionally Homo-Ser-Cl; Xaa5 is N-Me-Arg; Xaa6 is Ser, Gly, Thr, or Ile; Xaa7 is Asp or D-Asp; Xaa8 is selected from the group consisting of;
Thr, Val, Ile, Leu, hLeu and Nle;Xaa9 is selected from the group consisting of;
Leu, Nle, Cpa, Cba, HomoLeu, Aoc, and N-Me-Leu;Xaa10 is Pen, Cys, D-Cys or HomoCys; Xaa11 is selected from the group consisting of;
Trp, Phe, 2-Nal, 1-Nal, Tyr, His, Phe(4-F), Phe(4-CF3), Phe (4-CH3), Phe (4-tBu), Bip, Phe(4-COOH), Gly, 3,3-DiPhenylGly, 3,3 diPhenyl Ala, Tic, b-homo-Trp, D-1-Nal, D-2-Nal, Phe(2,4-diCl), Phe(3,4-diCl), Pge(4-carbomyl), Phe(3-Carbomyl), Tyr(Me), HomoPhe, N-Me-Phe, N-Me-Tyr, Dihydro Trp, Ile, Leu, Ser, Arg, Thr, Sar, Bpa, Phe(3-Me), Phe(2-Me), Phe(2-CF3), β
-Me-Phe, and any substituted aromatic amino acid and corresponding D-amino acids;Xaa12 is selected from the group consisting of;
any aromatic amino acid, Glu, D-Glu, homoGlu, Asp, D-Asp, D-homoGlu, Gla, beta-homo-Glu, N-Me-Glu, N-Me-Asp, alpha-H-Glu-, corresponding D-amino acid and isosteres;Xaa13 is absent; and Xaa14 is any amino acid.
-
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4. The peptide molecule of claim 1, wherein
Xaa1 is absent or any amino acid; -
Xaa2 is absent or any amino acid; Xaa3 is absent or any amino acid; Xaa4 is a 2-methylbenzoyl moiety capable of forming a thioether bond with Xaa10 or a modified HomoSer, optionally Homo-Ser-Cl; Xaa5 is N-Me-Arg; Xaa6 is Ser, Gly, Thr, or Ile; Xaa7 is Asp or D-Asp; Xaa8 is selected from the group consisting of;
Thr, Val, Ile, Leu, hLeu and Nle;Xaa9 is selected from the group consisting of;
Leu, Nle, Cpa, Cba, HomoLeu, Aoc, and N-Me-Leu;Xaa10 is Pen, Cys, D-Cys or HomoCys; Xaa11 is selected from the group consisting of;
Trp, Phe, 2-Nal, 1-Nal, Tyr, His, Phe(4-F), Phe(4-CF3), Phe (4-CH3). Phe (4-tBu), Bip, Phe(4-COOH), Gly, 3,3-DiPhenylGly, 3,3 diPhenyl Ala, Tic, b-homo-Trp, D-1-Nal, D-2-Nal, Phe(2,4-diCl), Phe(3,4-diCl), Pge(4-carbomyl), Phe(3-Carbomyl), Tyr(Me), HomoPhe, N-Me-Phe, N-Me-Tyr, Dihydro Trp, Ile, Leu, Arg, Thr, Sar, Bpa, Phe(3-Me), Phe(2-Me), Phe(2-CF3), β
-Me-Phe, and Ser;Xaa12 is selected from the group consisting of;
any aromatic amino acid, Glu, D-Glu, homoGlu, Asp, D-Asp, D-homoGlu, Gla, beta-homo-Glu, N-Me-Glu, N-Me-Asp, alpha-H-Glu, corresponding D-amino acid and isosteres;Xaa13 is absent or any amino acid; and Xaa14 is any amino acid.
-
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5. The peptide molecule of claim 1, wherein:
-
Xaa1 is absent or any amino acid; Xaa2 is absent or any amino acid; Xaa3 is absent or any amino acid; Xaa4 is a 2-methylbenzoyl moiety capable of forming a thioether bond with Xaa10 or a modified HomoSer, optionally Homo-Ser-Cl; Xaa5 is N-Me-Arg; Xaa6 is Ser; Xaa7 is Asp or D-Asp; Xaa8 is Thr or Val; Xaa9 is selected from the group consisting of;
Leu, Nle, Cpa, Cba, HomoLeu, Aoc, and N-Me-Leu;Xaa10 is Pen, Cys, D-Cys or HomoCys; Xaa11 is selected from the group consisting of;
Trp, Phe, 2-Nal, 1-Nal, Tyr, His, Phe(4-F), Phe(4-CF3), Phe (4-CH3), Phe (4-tBu), Bip, Phe(4-COOH), Gly, 3,3-DiPhenylGly, 3,3 diPhenyl Ala, Tic, b-homo-Trp, D-1-Nal, D-2-Nal, Phe(2,4-diCl), Phe(3,4-diCl), Pge(4-carbomyl), Phe(3-Carbomyl), Tyr(Me), HomoPhe, N-Me-Phe, N-Me-Tyr, Dihydro Trp, Ile, Leu, Arg, Thr, Sar, Bpa, Phe(3-Me), Phe(2-Me), Phe(2-CF3), β
-Me-Phe, and Ser,Xaa12 is absent or selected from the group consisting of;
any aromatic amino acid, Glu, D-Glu, homoGlu, Asp, D-Asp, D-homoGlu, Gla, beta-homo-Glu, N-Me-Glu, N-Me-Asp, alpha-H-Glu, corresponding D-amino acid and isosteres;Xaa13 is absent; and Xaa14 is any amino acid.
-
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6. The peptide molecule of claim 1, wherein:
-
Xaa1 is absent or any amino acid; Xaa2 is absent or any amino acid; Xaa3 is absent or any amino acid; Xaa4 is a 2-methylbenzoyl moiety capable of forming a thioether bond with Xaa10 or a modified HomoSer, optionally Homo-Ser-Cl; Xaa5 is N-Me-Arg; Xaa6 is Ser; Xaa7 is Asp or D-Asp; Xaa8 is Thr or Val; Xaa9 is selected from the group consisting of;
Leu, Nle, Cpa, Cba, HomoLeu, Aoc, and N-Me-Leu;Xaa10 is Pen, Cys, D-Cys or HomoCys; Xaa11 is selected from the group consisting of;
Trp, Phe, 2-Nal, 1-Nal, Tyr, His, Phe(4-F), Phe(4-CF3), Phe (4-CH3). Phe (4-tBu), Bip, Phe(4-COOH), Gly, 3,3-DiPhenylGly, 3,3 diPhenyl Ala, Tic, b-homo-Trp, D-1-Nal, D-2-Nal, Phe(2,4-diCl), Phe(3,4-diCl), Pge(4-carbomyl), Phe(3-Carbomyl), Tyr(Me), HomoPhe, N-Me-Phe, N-Me-Tyr, Dihydro Trp, Ile, Leu, Arg, Thr, Sar, Bpa, Phe(3-Me), Phe(2-Me), Phe(2-CF3), β
-Me-Phe, and Ser,Xaa12 is absent or selected from the group consisting of;
any aromatic amino acid, Glu, D-Glu, beta-homo-Glu, N-Me-Glu, N-Me-Asp, alpha-H-Glu;Xaa13 is absent; and
,Xaa14 is any amino acid.
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7. The peptide molecule of claim 1, wherein:
-
Xaa1 is absent or any amino acid; Xaa2 is absent or any amino acid; Xaa3 is absent or any amino acid; Xaa4 is a 2-methylbenzoyl moiety capable of forming a thioether bond with Xaa10 or a modified HomoSer, optionally Homo-Ser-Cl; Xaa5 is N-Me-Arg; Xaa6 is Ser; Xaa7 is Asp or D-Asp; Xaa8 is Thr or Val; Xaa9 is Leu; Xaa10 is Pen, Cys, D-Cys or HomoCys; Xaa11 is selected from the group consisting of;
Trp, Phe, 2-Nal, 1-Nal, Tyr, His, Phe(4-F), Phe(4-CF3), Phe (4-CH3). Phe (4-tBu), Bip, Phe(4-COOH), Gly, 3,3-DiPhenylGly, 3,3 diPhenyl Ala, Tic, b-homo-Trp, D-1-Nal, D-2-Nal, Phe(2,4-diCl), Phe(3,4-diCl), Pge(4-carbomyl), Phe(3-Carbomyl), Tyr(Me), HomoPhe, N-Me-Phe, N-Me-Tyr, Dihydro Trp, Ile, Leu, Arg, Thr, Sar, Bpa, Phe(3-Me), Phe(2-Me), Phe(2-CF3), β
-Me-Phe, and Ser,Xaa12 is selected from the group consisting of;
any aromatic amino acid, Glu, D-Glu, beta-homo-Glu, N-Me-Glu, N-Me-Asp, alpha-H-Glu, corresponding D-amino acid and isosteres;Xaa13 is absent; and Xaa14 is any amino acid.
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8. The peptide molecule of claim 1, wherein:
-
Xaa1 is absent or any amino acid; Xaa2 is absent or any amino acid; Xaa3 is absent or any amino acid; Xaa4 is a 2-methylbenzoyl moiety capable of forming a thioether bond with Xaa10 or a modified HomoSer, optionally Homo-Ser-Cl; Xaa5 is N-Me-Arg; Xaa6 is Ser; Xaa7 is Asp or D-Asp; Xaa8 is Thr or Val; Xaa9 is Leu; Xaa10 is Pen, Cys, D-Cys or HomoCys; Xaa11 is selected from the group consisting of;
Trp, Phe, 2-Nal, 1-Nal, Tyr, His, Phe(4-F), Phe(4-CF3), Phe (4-CH3). Phe (4-tBu), Bip, Phe(4-COOH), Gly, 3,3-DiPhenylGly, 3,3 diPhenyl Ala, Tic, b-homo-Trp, D-1-Nal, D-2-Nal, Phe(2,4-diCl), Phe(3,4-diCl), Pge(4-carbomyl), Phe(3-Carbomyl), Tyr(Me), HomoPhe, N-Me-Phe, N-Me-Tyr, Dihydro Trp, Ile, Leu, Arg, Thr, Sar, Bpa, Phe(3-Me), Phe(2-Me), Phe(2-CF3), β
-Me-Phe, and Ser,Xaa12 is selected from the group consisting of;
any aromatic amino acid, Glu, D-Glu, N-Me-Glu, N-Me-Asp, alpha-H-Glu, and beta-homo-Glu;Xaa13 is absent; and Xaa14 is any amino acid.
-
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9. The peptide molecule of claim 1, wherein:
-
Xaa1 is absent or any amino acid; Xaa2 is absent or any amino acid; Xaa3 is absent or any amino acid; Xaa4 is a 2-methylbenzoyl moiety capable of forming a thioether bond with Xaa10 or a modified HomoSer, optionally Homo-Ser-Cl; Xaa5 is N-Me-Arg; Xaa6 is Ser; Xaa7 is Asp; Xaa8 is Thr or Val; Xaa9 is Leu; Xaa10 is Pen, Cys, D-Cys or HomoCys; Xaa11 is selected from the group consisting of;
Trp, Phe, 2-Nal, 1-Nal, Tyr, His, Phe(4-F), Phe(4-CF3), Phe (4-CH3). Phe (4-tBu), Bip, Phe(4-COOH), Gly, 3,3-DiPhenylGly, 3,3 diPhenyl Ala, Tic, b-homo-Trp, D-1-Nal, D-2-Nal, Phe(2,4-diCl), Phe(3,4-diCl), Pge(4-carbomyl), Phe(3-Carbomyl), Tyr(Me), HomoPhe, N-Me-Phe, N-Me-Tyr, Dihydro Trp, Ile, Leu, Arg, Thr, Sar, Bpa, Phe(3-Me), Phe(2-Me), Phe(2-CF3), β
-Me-Phe, and Ser,Xaa12 is selected from the group consisting of;
any aromatic amino acid, Glu, D-Glu, N-Me-Glu, N-Me-Asp, alpha-H-Glu, and beta-homo-Glu;Xaa13 is absent; and Xaa14 is any amino acid.
-
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10. The peptide molecule of claim 1, wherein:
-
Xaa1 is absent or any amino acid; Xaa2 is absent or any amino acid; Xaa3 is absent or any amino acid; Xaa4 is a 2-methylbenzoyl moiety capable of forming a thioether bond with Xaa10 or a modified HomoSer, optionally Homo-Ser-Cl; Xaa5 is N-Me-Arg; Xaa6 is Ser; Xaa7 is Asp or D-Asp; Xaa8 is Thr or Val; Xaa9 is Leu; Xaa10 is Pen, Cys, D-Cys or HomoCys; Xaa11 is selected from the group consisting of;
Trp, Phe, 2-Nal, 1-Nal, Tyr, His, Phe(4-F), Phe(4-CF3), Phe (4-CH3). Phe (4-tBu), Bip, Phe(4-COOH), Gly, 3,3-DiPhenylGly, 3,3 diPhenyl Ala, Tic, b-homo-Trp, D-1-Nal, D-2-Nal, Phe(2,4-diCl), Phe(3,4-diCl), Pge(4-carbomyl), Phe(3-Carbomyl), Tyr(Me), Bpa, Phe(3-Me), Phe(2-Me), Phe(2-CF3), β
-Me-Phe, and HomoPhe;Xaa12 is selected from the group consisting of;
any aromatic amino acid, Glu, D-Glu, N-Me-Glu, N-Me-Asp, alpha-H-Glu, and beta-homo-Glu;Xaa3 is absent; and Xaa14 is any amino acid.
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11. The peptide molecule of claim 1, wherein Xaa1, Xaa2 and Xaa3 are absent.
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12. The peptide molecule of claim 1, wherein Xaa4 is a 2-methylbenzoyl moiety.
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13. The peptide molecule of claim 1, wherein Xaa5 is 2-Me-Arg.
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14. The peptide molecule of claim 1, wherein Xaa14 is selected from the group consisting of:
- Lys, D-Lys, N-Me-Lys, D-N-Me-Lys, Orn, Dab, Dap, Homo-Lys, D-Dap, D-Dab, Cys, HomoCys, Pen, or D-Orn.
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15. The peptide molecule of claim 1, wherein Xaa4 is a 2-methyl benzoyl moiety that forms a thioether bond with Xaa10, Xaa5 is N-Me-Arg, Xaa6 is Ser, Xaa7 is Asp, Xaa8 is Thr, Xaa9 is Leu, and Xaa10 is Pen, Cys, D-Cys or HomoCys.
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17. The peptide molecule of claim 1, wherein Xaa14 is selected from the group consisting of:
- D-Lys, N-Me-Lys, and D-N-Me-Lys.
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23. The peptide molecule of claim 1, further comprising a terminal modifying group selected from the group consisting of DIG, PEG4, PEG13, PEG25, PEG1K, PEG2K, PEG4K, PEG5K, Polyethylene glycol having molecular weight from 400 Da to 40,000 Da, IDA, Ac-IDA, ADA, Glutaric acid, Isophthalic acid, 1,3-phenylenediacetic acid, 1,4-phenylenediacetic acid, 1,2-phenylenediacetic acid, AADA, suitable aliphatic acids, suitable aromatic acids, and heteroaromatic acids.
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26. The peptide molecule of claim 1, wherein the peptide molecule is a dimer comprising two peptide molecules of claim 1 dimerized by a linker.
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28. The peptide molecule of claim 26, where in the linker is selected from the group consisting of:
- DIG, PEG4, PEG4-biotin, PEG13, PEG25, PEG1K, PEG2K, PEG3.4K, PEG4K, PEG5K, IDA, ADA, Boc-IDA, Glutaric acid, Isophthalic acid, 1,3-phenylenediacetic acid, 1,4-phenylenediacetic acid, 1,2-phenylenediacetic acid, Triazine, Boc-Triazine, IDA-biotin, PEG4-Biotin, AADA, suitable aliphatics, aromatics, heteroaromatics, and polyethylene glycol based linkers having a molecular weight from approximately 400 Da to approximately 40,000 Da.
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30. A pharmaceutical composition comprising a peptide molecule of claim 1 and a pharmaceutically acceptable carrier, diluent or excipient.
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34. A method for treating or preventing a disease or condition that is associated with a biological function of integrin α
- 4β
7, the method comprising providing to a subject in need thereof an effective amount of the peptide molecule of claim 1.
- 4β
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35. The method of claim 34, wherein the disease or condition is selected from the group consisting of Inflammatory Bowel Disease (IBD), adult IBD, pediatric IBD, adolescent IBD, ulcerative colitis, Crohn'"'"'s disease, Celiac disease (nontropical Sprue), enteropathy associated with seronegative arthropathies, microscopic colitis, collagenous colitis, eosinophilic gastroenteritis, radiotherapy, chemotherapy, pouchitis resulting after proctocolectomy and ileoanal anastomosis, gastrointestinal cancer, pancreatitis, insulin-dependent diabetes mellitus, mastitis, cholecystitis, cholangitis, pericholangitis, chronic bronchitis, chronic sinusitis, asthma, primary sclerosing cholangitis, human immunodeficiency virus (HIV) infection in the GI tract, eosinophilic asthma, eosinophilic esophagitis, gastritis, colitis, microscopic colitis and graft versus host disease (GVDH).
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2. The peptide molecule of claim 1, wherein
- 49);
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16. (canceled)
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18-19. -19. (canceled)
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20. A peptide molecule comprising a structure of Formula (VI) (SEQ ID NO:
- 387);
- View Dependent Claims (21)
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21. The peptide molecule of claim 20, wherein Xaa1 is a 2-methyl benzoyl moiety that forms a thioether bond with Xaa7, Xaa2 is N-Me-Arg, Xaa3 is Ser, Xaa4 is Asp, Xaa5 is Thr, Xaa6 is Leu, and Xaa7 is Pen, Cys, D-Cys or HomoCys.
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21. The peptide molecule of claim 20, wherein Xaa1 is a 2-methyl benzoyl moiety that forms a thioether bond with Xaa7, Xaa2 is N-Me-Arg, Xaa3 is Ser, Xaa4 is Asp, Xaa5 is Thr, Xaa6 is Leu, and Xaa7 is Pen, Cys, D-Cys or HomoCys.
- 387);
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22. (canceled)
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24-25. -25. (canceled)
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27. (canceled)
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29. (canceled)
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31-33. -33. (canceled)
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36-46. -46. (canceled)
Specification
- Resources
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Current AssigneeProtagonist Therapeutics, Inc.
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Original AssigneeProtagonist Therapeutics, Inc.
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InventorsBhandari, Ashok, Patel, Dinesh V., Zemede, Genet, Mattheakis, Larry C., Frederick, Brian Troy
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Granted Patent
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Time in Patent OfficeDays
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Field of Search
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US Class Current1/1
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CPC Class CodesA61K 38/00 Medicinal preparations cont...A61K 38/12 Cyclic peptides , e.g. baci...A61K 47/54 the modifying agent being a...A61K 47/545 Heterocyclic compounds A61K...A61K 47/60 the organic macromolecular ...A61K 47/64 Drug-peptide, drug-protein ...A61P 1/00 Drugs for disorders of the ...A61P 1/04 for ulcers, gastritis or re...A61P 1/16 for liver or gallbladder di...A61P 1/18 for pancreatic disorders, e...A61P 11/00 Drugs for disorders of the ...A61P 11/02 Nasal agents, e.g. deconges...A61P 11/06 AntiasthmaticsA61P 15/00 Drugs for genital or sexual...A61P 19/00 Drugs for skeletal disordersA61P 29/00 Non-central analgesic, anti...A61P 3/10 for hyperglycaemia, e.g. an...A61P 31/18 for HIVA61P 35/00 Antineoplastic agentsA61P 37/06 Immunosuppressants, e.g. dr...A61P 43/00 : Drugs for specific purposes...C07K 14/70546 : Integrin superfamilyC07K 7/06 : having 5 to 11 amino acidsC07K 7/08 : having 12 to 20 amino acids...C07K 7/56 : the cyclisation not occurri...