HUMANIZED ANTIBODIES WITH ULTRALONG COMPLEMENTARY DETERMINING REGIONS
First Claim
Patent Images
1. A humanized antibody or binding fragment thereof comprising a heavy chain variable region comprising:
- (a) an amino acid sequence selected from the group consisting of;
(i) SEQ ID NO;
734 or SEQ ID NO;
735,(ii) SEQ ID NO;
736 or SEQ ID NO;
737,(iii) SEQ ID NO;
738 or SEQ ID NO;
739,(iv) SEQ ID NO;
740 or SEQ ID NO;
741,(v) SEQ ID NO;
742 or SEQ ID NO;
743,(vi) SEQ ID NO;
744 or SEQ ID NO;
745,(vii) SEQ ID NO;
746 or SEQ ID NO 747, and(viii) SEQ ID NO;
748 or SEQ ID NO;
749; and
(b) an ultralong CDR3.
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Abstract
The present disclosure provides humanized antibodies, including antibodies comprising an ultralong CDR3 and uses thereof.
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Citations
225 Claims
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1. A humanized antibody or binding fragment thereof comprising a heavy chain variable region comprising:
- (a) an amino acid sequence selected from the group consisting of;
(i) SEQ ID NO;
734 or SEQ ID NO;
735,(ii) SEQ ID NO;
736 or SEQ ID NO;
737,(iii) SEQ ID NO;
738 or SEQ ID NO;
739,(iv) SEQ ID NO;
740 or SEQ ID NO;
741,(v) SEQ ID NO;
742 or SEQ ID NO;
743,(vi) SEQ ID NO;
744 or SEQ ID NO;
745,(vii) SEQ ID NO;
746 or SEQ ID NO 747, and(viii) SEQ ID NO;
748 or SEQ ID NO;
749; and(b) an ultralong CDR3. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 73, 74, 117, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225)
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2. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 is 35 amino acids in length or longer, 40 amino acids in length or longer, 45 amino acids in length or longer, 50 amino acids in length or longer, 55 amino acids in length or longer, or 60 amino acids in length or longer.
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3. The humanized antibody or binding fragment thereof of claim 2, wherein the ultralong CDR3 is 35 amino acids in length or longer.
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4. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises 3 or more cysteine residues, 4 or more cysteine residues, 5 or more cysteine residues, 6 or more cysteine residues, 7 or more cysteine residues, 8 or more cysteine residues, 9 or more cysteine residues, 10 or more cysteine residues, 11 or more cysteine residues, or 12 or more cysteine residues.
-
5. The humanized antibody or binding fragment thereof of claim 4, wherein the ultralong CDR3 comprises 3 or more cysteine residues.
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6. The humanized antibody or binding fragment thereof of claim 1, wherein the antibodies or binding fragments thereof comprise a cysteine motif.
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7. The humanized antibody or binding fragment thereof of claim 6, wherein the cysteine motif is selected from the group consisting of:
- CX10CX5CX5CXCX7C (SEQ ID NO;
41), CX10CX6CX5CXCX15C (SEQ ID NO;
42), CX11CXCX5C (SEQ ID NO;
43), CX11CX5CX5CXCX7C (SEQ ID NO;
44), CX10CX6CX5CXCX13C (SEQ ID NO;
45), CX10CX5CXCX4CX8C (SEQ ID NO;
46), CX10CX6CX6CXCX7C (SEQ ID NO;
47), CX10CX4CX7CXCX8C (SEQ ID NO;
48), CX10CX4CX7CXCX7C (SEQ ID NO;
49), CX13CX8CX8C (SEQ ID NO;
50), CX10CX6CX5CXCX7C (SEQ ID NO;
51), CX10CX5CX5C (SEQ ID NO;
52), CX10CX5CX6CXCX7C (SEQ ID NO;
53), CX10CX6CX5CX7CX9C (SEQ ID NO;
54), CX9CX7CX5CXCX7C (SEQ ID NO;
55), CX10CX6CX5CXCX9C (SEQ ID NO;
56), CX10CXCX4CX5CX11C (SEQ ID NO;
57), CX7CX3CX6CX5CXCX5CX10C (SEQ ID NO;
58), CX10CXCX4CX5CXCX2CX3C (SEQ ID NO;
59), CX16CX5CXC (SEQ ID NO;
60), CX6CX4CXCX4CX5C (SEQ ID NO;
61), CX11CX4CX5CX6CX3C (SEQ ID NO;
62), CX8CX2CX6CX5C (SEQ ID NO;
63), CX10CX5CX5CXCX10C (SEQ ID NO;
64), CX10CXCX6CX4CXC (SEQ ID NO;
65), CX10CX5CX5CXCX2C (SEQ ID NO;
66), CX14CX2CX3CXCXC (SEQ ID NO;
67), CX15CX5CXC (SEQ ID NO;
68), CX4CX6CX9CX2CX11C (SEQ ID NO;
69), CX6CX4CX5CX5CX12C (SEQ ID NO;
70), CX7CX3CXCXCX4CX5CX9C (SEQ ID NO;
71), CX10CX6CX5C (SEQ ID NO;
72), CX7CX3CX5CX5CX9C (SEQ ID NO;
73), CX7CX5CXCX2C (SEQ ID NO;
74), CX10CXCX6C (SEQ ID NO;
75), CX10CX3CX3CX5CX7CXCX6C (SEQ ID NO;
76), CX10CX4CX5CX12CX2C (SEQ ID NO;
77), CX12CX4CX5CXCXCX9CX3C (SEQ ID NO;
78), CX12CX4CX5CX12CX2C (SEQ ID NO;
79), CX10CX6CX5CXCX11C (SEQ ID NO;
80), CX16CX5CXCXCX14C (SEQ ID NO;
81), CX10CX5CXCX8CX6C (SEQ ID NO;
82), CX12CX4CX5CX8CX2C (SEQ ID NO;
83), CX12CX5CX5CXCX8C (SEQ ID NO;
84), CX10CX6CX5CXCX4CXCX9C (SEQ ID NO;
85), CX11CX4CX5CX8CX2C (SEQ ID NO;
86), CX10CX6CX5CX8CX2C (SEQ ID NO;
87), CX10CX6CX5CXCX8C (SEQ ID NO;
88), CX10CX6CX5CXCX3CX8CX2C (SEQ ID NO;
89), CX10CX6CX5CX3CX8C (SEQ ID NO;
90), CX10CX6CX5CXCX2CX6CX5C (SEQ ID NO;
91), CX7CX6CX3CX3CX9C (SEQ ID NO;
92), CX9CX8CX5CX6CX5C (SEQ ID NO;
93), CX10CX2CX2CX7CXCX11CX5C (SEQ ID NO;
94), and CX10CX6CX5CXCX2CX8CX4C (SEQ ID NO;
95).
- CX10CX5CX5CXCX7C (SEQ ID NO;
-
8. The humanized antibody or binding fragment thereof of claim 6, wherein the cysteine motif is selected from the group consisting of:
- CCX3CXCX3CX2CCXCX5CX9CX5CXC (SEQ ID NO;
96), CX6CX2CX5CX4CCXCX4CX6CXC (SEQ ID NO;
97), CX7CXCX5CX4CCCX4CX6CXC (SEQ ID NO;
98), CX9CX3CXCX2CXCCCX6CX4C (SEQ ID NO;
99), CX5CX3CXCX4CX4CCX10CX2CC (SEQ ID NO;
100), CX5CXCX1CXCX3CCX3CX4CX10C (SEQ ID NO;
101), CX9CCCX3CX4CCCX5CX6C (SEQ ID NO;
102), CCX8CX5CX4CX3CX4CCXCX1C (SEQ ID NO;
103), CCX6CCX5CCCX4CX4CX12C (SEQ ID NO;
104), CX6CX2CX3CCCX4CX5CX3CX3C (SEQ ID NO;
105), CX3CX5CX6CX4CCXCX5CX4CXC (SEQ ID NO;
106), CX4CX4CCX4CX4CXCX11CX2CXC (SEQ ID NO;
107), CX5CX2CCX5CX4CCX3CCX7C (SEQ ID NO;
108), CX5CX5CX3CX2CXCCX4CX7CXC (SEQ ID NO;
109), CX3CX7CX3CX4CCXCX2CX5CX2C (SEQ ID NO;
110), CX9CX3CXCX4CCX5CCCX6C (SEQ ID NO;
111), CX9CX3CXCX2CXCCX6CX3CX3C (SEQ ID NO;
112), CX8CCXCX3CCX3CXCX3CX4C (SEQ ID NO;
113), CX9CCX4CX2CXCCXCX4CX3C (SEQ ID NO;
114), CX10CXCX3CX2CXCCX4CX5CXC (SEQ ID NO;
115), CX9CXCX3CX2CXCCX4CX5CXC (SEQ ID NO;
116), CX6CCXCX5CX4CCXCX5CX2C (SEQ ID NO;
117), CX6CCXCX3CXCCX3CX4CC (SEQ ID NO;
118), CX6CCXCX3CXCX2CXCX4CX8C (SEQ ID NO;
119), CX4CX2CCX3CXCX4CCX2CX3C (SEQ ID NO;
120), CX3CX5CX3CCCX4CX9C (SEQ ID NO;
121), CCX9CX3CXCCX3CX5C (SEQ ID NO;
122), CX9CX2CX3CX4CCX4CX5C (SEQ ID NO;
123), CX9CX7CX4CCXCX7CX3C (SEQ ID NO;
124), CX9CX3CCCX10CX2CX3C (SEQ ID NO;
125), CX3CX5CX5CX4CCX10CX6C (SEQ ID NO;
126), CX9CX5CX4CCXCX5CX4C (SEQ ID NO;
127), CX7CXCX6CX4CCCX10C (SEQ ID NO;
128), CX8CX2CX4CCX4CX3CX3C (SEQ ID NO;
129), CX7CX5CXCX4CCX7CX4C (SEQ ID NO;
130), CX11CX3CX4CCCX8CX2C (SEQ ID NO;
131), CX2CX3CX4CCX4CX5CX15C (SEQ ID NO;
132), CX9CX5CX4CCX7C (SEQ ID NO;
133), CX9CX7CX3CX2CX6C (SEQ ID NO;
134), CX9CX5CX4CCX14C (SEQ ID NO;
135), CX9CX5CX4CCX8C (SEQ ID NO;
136), CX9CX6CX4CCXC (SEQ ID NO;
137), CX5CCX7CX4CX12 (SEQ ID NO;
138), CX10CX3CX4CCX4C (SEQ ID NO;
139), CX9CX4CCX5CX4C (SEQ ID NO;
140), CX10CX3CX4CX7CXC (SEQ ID NO;
141), CX7CX7CX2CX2CX3C (SEQ ID NO;
142), CX9CX4CX4CCX6C (SEQ ID NO;
143), CX7CXCX3CXCX6C (SEQ ID NO;
144), CX7CXCX4CXCX4C (SEQ ID NO;
145), CX9CX5CX4C (SEQ ID NO;
146), CX3CX6CX8C (SEQ ID NO;
147), CX10CXCX4C (SEQ ID NO;
148), CX10CCX4C (SEQ ID NO;
149), CX15C (SEQ ID NO;
150), CX10C (SEQ ID NO;
151), and CX9C (SEQ ID NO;
152).
- CCX3CXCX3CX2CCXCX5CX9CX5CXC (SEQ ID NO;
-
9. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises 2 to 6 disulfide bonds.
-
10. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises SEQ ID NO:
- 40 or a derivative thereof.
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11. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises amino acid residues 3-6 of any of one SEQ ID NO:
- 1-4.
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12. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises a non-human DH or a derivative thereof.
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13. The humanized antibody or binding fragment thereof of claim 12, wherein the non-human DH is SEQ ID NO:
- 5, SEQ ID NO;
6, SEQ ID NO;
7, SEQ ID NO;
8, SEQ ID NO;
9, SEQ ID NO;
10, SEQ ID NO;
11, or SEQ ID NO;
12.
- 5, SEQ ID NO;
-
14. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises a JH sequence or a derivative thereof.
-
15. The humanized antibody or binding fragment thereof of claim 14, wherein the JH sequence comprises amino acids at positions 5-15 of SEQ ID NO:
- 13, SEQ ID NO;
14, SEQ ID NO;
15, SEQ ID NO;
16, or SEQ ID NO;
17.
- 13, SEQ ID NO;
-
16. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises:
-
a sequence derived from a non-human VH sequence or a derivative thereof; a sequence derived from a non-human DH sequence or a derivative thereof; and
/ora sequence derived from a JH sequence or derivative thereof.
-
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17. The humanized antibody or binding fragment thereof of claim 16, wherein the ultralong CDR3 comprises an additional amino acid sequence comprising two to six amino acid residues or more positioned between the VH sequence and the DH sequence.
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18. The humanized antibody or binding fragment thereof of claim 17, wherein the additional amino acid sequence is selected from the group consisting of:
- IR, IF, SEQ ID NO;
18, SEQ ID NO;
19, SEQ ID NO;
20 or SEQ ID NO;
21.
- IR, IF, SEQ ID NO;
-
19. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises a sequence derived from or based on SEQ ID NO:
- 22, SEQ ID NO;
23, SEQ ID NO;
24, SEQ ID NO;
25, SEQ ID NO;
26, SEQ ID NO;
27, or SEQ ID NO;
28.
- 22, SEQ ID NO;
-
20. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises a non-bovine sequence or a non-antibody sequence.
-
21. The humanized antibody or binding fragment thereof of claim 20, wherein the non-antibody sequence is a synthetic sequence.
-
22. The humanized antibody or binding fragment thereof of claim 20, wherein the non-antibody sequence is a cytokine sequence, a lymphokine sequence, a chemokine sequence, a growth factor sequence, a hormone sequence, or a toxin sequence.
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23. The humanized antibody or binding fragment thereof of claim 20, wherein the non-antibody sequence is an IL-8 sequence, an IL-21 sequence, an SDF-1 (alpha) sequence, a somatostatin sequence, a chlorotoxin sequence, a Pro-TxII sequence, a ziconotide sequence, an ADWX-1 sequence, an HsTx1 sequence, an OSK1 sequence, a Pi2 sequence, a Hongotoxin (HgTX) sequence, a Margatoxin sequence, an Agitoxin-2 sequence, a Pi3 sequence, a Kaliotoxin sequence, an Anuroctoxin sequence, a Charybdotoxin sequence, a Tityustoxin -K- alpha sequence, a Maurotoxin sequence, a Ceratotoxin 1 (CcoTx1) sequence, a CcoTx2 sequence, a CcoTx3 sequence, a Phrixotoxin 3 (PaurTx3) sequence, a Hanatoxin 1 sequence, a Phrixotoxin 1 sequence, a Huwentoxin-IV sequence, an α
- -conotoxin ImI sequence, an α
-conotoxin EpI sequence, an α
-conotoxin PnIA sequence, an α
-conotoxin PnIB sequence, an α
-conotoxin MII sequence, an α
-conotoxin AuIA sequence, an α
-conotoxin AuIB sequence, an α
-conotoxin AuIC sequence, a conotoxin κ
-PVIIA sequence, a charybdotoxin sequence, a neurotoxin B-IV sequence, a crotamine sequence, a ω
-GVIA (conotoxin) sequence, a κ
-hefutoxin 1 sequence, a Css4 sequence, a Bj-xtrIT sequence, a BcIV sequence, a Hm-1 sequence, a Hm-2 sequence, a GsAF-I (β
-theraphotoxin-Gr1b) sequence, a Protoxin I (ProTx-I sequence, a β
-theraphotoxin-Tp1a) sequence, a Protoxin II (ProTx II) sequence, a Huwentoxin I sequence, a μ
-Conotoxin PIIIA sequence, a Jingzhaotoxin-III (β
-TRTX-Cj1a) sequence, a GsAF-II (Kappa-theraphotoxin-Gr2c) sequence, a ShK (Stichodactyla toxin) sequence, a HsTx1 sequence, a Guangxitoxin 1E (GxTx-1E) sequence, a Maurotoxin sequence, a Charybdotoxin (ChTX) sequence, an Iberiotoxin (IbTx) sequence, a Leiurotoxin 1 (scyllatoxin) sequence, a Tamapin sequence, a Kaliotoxin-1 (KTX) sequence, a Purotoxin1 (PT-1) sequence, or a GpTx-1 sequence, a MOKA Toxin sequence, a OSK1 (P12, K16, D20) sequence, a OSK1 (K16, D20) sequence, a HmK sequence, a ShK (K16, Y26, K29) sequence, a ShK (K16) sequence, a ShK-A (K16) sequence, a ShK (K16, E30) sequence, a ShK (Q21) sequence, a ShK (L21) sequence, a ShK (F21) sequence, a ShK (121) sequence, or a ShK (A21) sequence.
- -conotoxin ImI sequence, an α
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24. The humanized antibody or binding fragment thereof of claim 20, wherein the non-antibody sequence is any one of SEQ ID NOS:
- 475-481, 599-655, 666-698, 727-733, 808-810, and 831-835.
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25. The humanized antibody or binding fragment thereof of claim 20, wherein the antibody heavy chain variable region comprises an amino acid sequence selected from the group consisting of SEQ ID NO:
- 770-779, 784-791, 903-922 and 925-955.
-
26. The humanized antibody or binding fragment thereof of claim 20, wherein the humanized antibody or binding fragment thereof comprises a light chain variable region comprising an amino acid sequence of SEQ ID NO:
- 956 or 959.
-
27. The humanized antibody or binding fragment thereof of claim 20, wherein the antibody heavy chain variable region comprises an amino acid sequence selected from the group consisting of SEQ ID NO:
- 770-779, 784-791, 903-922 and 925-955, and wherein the humanized antibody or binding fragment thereof comprises a light chain variable region comprising the amino acid sequence of SEQ ID NO;
959.
- 770-779, 784-791, 903-922 and 925-955, and wherein the humanized antibody or binding fragment thereof comprises a light chain variable region comprising the amino acid sequence of SEQ ID NO;
-
28. The humanized antibody or binding fragment thereof of claim 20, wherein the antibody heavy chain variable region comprises the amino acid sequence of SEQ ID NO:
- 941, and wherein the humanized antibody or binding fragment thereof comprises a light chain variable region comprising the amino acid sequence of SEQ ID NO;
959.
- 941, and wherein the humanized antibody or binding fragment thereof comprises a light chain variable region comprising the amino acid sequence of SEQ ID NO;
-
29. The humanized antibody or binding fragment thereof of claim 20, wherein the antibody heavy chain variable region comprises an amino acid sequence selected from the group consisting of SEQ ID NO:
- 770-779, 784-791, 903-922 and 925-955, and wherein the humanized antibody or binding fragment thereof comprises a light chain variable region comprising the amino acid sequence of SEQ ID NO;
956.
- 770-779, 784-791, 903-922 and 925-955, and wherein the humanized antibody or binding fragment thereof comprises a light chain variable region comprising the amino acid sequence of SEQ ID NO;
-
30. The humanized antibody or binding fragment thereof of claim 20, wherein the non-antibody sequence replaces at least a portion of the ultralong CDR3.
-
31. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises a X1X2X3X4X5 motif,
wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q). -
32. The humanized antibody or binding fragment thereof of claim 31, wherein the X1X2X3X4X5 motif is TTVHQ (SEQ ID NO:
- 153), TSVHQ (SEQ ID NO;
154), SSVTQ (SEQ ID NO;
155), STVHQ (SEQ ID NO;
156), ATVRQ (SEQ ID NO;
157), TTVYQ (SEQ ID NO;
158), SPVHQ (SEQ ID NO;
159), ATVYQ (SEQ ID NO;
160), TAVYQ (SEQ ID NO;
161), TNVHQ (SEQ ID NO;
162), ATVHQ (SEQ ID NO;
163), STVYQ (SEQ ID NO;
164), TIVHQ (SEQ ID NO;
165), AIVYQ (SEQ ID NO;
166), TTVFQ (SEQ ID NO;
167), AAVFQ (SEQ ID NO;
168), GTVHQ (SEQ ID NO;
169), ASVHQ (SEQ ID NO;
170), TAVFQ (SEQ ID NO;
171), ATVFQ (SEQ ID NO;
172), AAAHQ (SEQ ID NO;
173), VWYQ (SEQ ID NO;
174), GTVFQ (SEQ ID NO;
175), TAVHQ (SEQ ID NO;
176), ITVHQ (SEQ ID NO;
177), ITAHQ (SEQ ID NO;
178), VTVHQ (SEQ ID NO;
179);
AAVHQ (SEQ ID NO;
180), GTVYQ (SEQ ID NO;
181), TTVLQ (SEQ ID NO;
182), TTTHQ (SEQ ID NO;
183), or TTDYQ (SEQ ID NO;
184).
- 153), TSVHQ (SEQ ID NO;
-
33. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises a CX1X2X3X4X5 motif.
-
34. The humanized antibody or binding fragment thereof of claim 33, wherein the CX1X2X3X4X5 motif is CTTVHQ (SEQ ID NO:
- 185), CTSVHQ (SEQ ID NO;
186), CSSVTQ (SEQ ID NO;
187), CSTVHQ (SEQ ID NO;
188), CATVRQ (SEQ ID NO;
189), CTTVYQ (SEQ ID NO;
190), CSPVHQ (SEQ ID NO;
191), CATVYQ (SEQ ID NO;
192), CTAVYQ (SEQ ID NO;
193), CTNVHQ (SEQ ID NO;
194), CATVHQ (SEQ ID NO;
195), CSTVYQ (SEQ ID NO;
196), CTIVHQ (SEQ ID NO;
197), CAIVYQ (SEQ ID NO;
198), CTTVFQ (SEQ ID NO;
199), CAAVFQ (SEQ ID NO;
200), CGTVHQ (SEQ ID NO;
201), CASVHQ (SEQ ID NO;
202), CTAVFQ (SEQ ID NO;
203), CATVFQ (SEQ ID NO;
204), CAAAHQ (SEQ ID NO;
205), CVVVYQ (SEQ ID NO;
206), CGTVFQ (SEQ ID NO;
207), CTAVHQ (SEQ ID NO;
208), CITVHQ (SEQ ID NO;
209), CITAHQ (SEQ ID NO;
210), CVTVHQ (SEQ ID NO;
211);
CAAVHQ (SEQ ID NO;
212), CGTVYQ (SEQ ID NO;
213), CTTVLQ (SEQ ID NO;
214), CTTTHQ (SEQ ID NO;
215), or CTTDYQ (SEQ ID NO;
216).
- 185), CTSVHQ (SEQ ID NO;
-
35. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises a (XaXb)z motif,
wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of: - tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), and wherein z is 1-4.
-
36. The humanized antibody or binding fragment thereof of claim 35, wherein the (XaXb)z motif is CYTYNYEF (SEQ ID NO:
- 217), HYTYTYDF (SEQ ID NO;
218), HYTYTYEW (SEQ ID NO;
219), KHRYTYEW (SEQ ID NO;
220), NYIYKYSF (SEQ ID NO;
221), PYIYTYQF (SEQ ID NO;
222), SFTYTYEW (SEQ ID NO;
223), SYIYIYQW (SEQ ID NO;
224), SYNYTYSW (SEQ ID NO;
225), SYSYSYEY (SEQ ID NO;
226), SYTYNYDF (SEQ ID NO;
227), SYTYNYEW (SEQ ID NO;
228), SYTYNYQF (SEQ ID NO;
229), SYVWTHNF (SEQ ID NO;
230), TYKYVYEW (SEQ ID NO;
231), TYTYTYEF (SEQ ID NO;
232), TYTYTYEW (SEQ ID NO;
233), VFTYTYEF (SEQ ID NO;
234), AYTYEW (SEQ ID NO;
235), DYIYTY (SEQ ID NO;
236), IHSYEF (SEQ ID NO;
237), SFTYEF (SEQ ID NO;
238), SHSYEF (SEQ ID NO;
239), THTYEF (SEQ ID NO;
240), TWTYEF (SEQ ID NO;
241), TYNYEW (SEQ ID NO;
242), TYSYEF (SEQ ID NO;
243), TYSYEH (SEQ ID NO;
244), TYTYDF (SEQ ID NO;
245), TYTYEF (SEQ ID NO;
246), TYTYEW (SEQ ID NO;
247), AYEF (SEQ ID NO;
248), AYSF (SEQ ID NO;
249), AYSY (SEQ ID NO;
250), CYSF (SEQ ID NO;
251), DYTY (SEQ ID NO;
252), KYEH (SEQ ID NO;
253), KYEW (SEQ ID NO;
254), MYEF (SEQ ID NO;
255), NWIY (SEQ ID NO;
256), NYDY (SEQ ID NO;
257), NYQW (SEQ ID NO;
258), NYSF (SEQ ID NO;
259), PYEW (SEQ ID NO;
260), RYNW (SEQ ID NO;
261), RYTY (SEQ ID NO;
262), SYEF (SEQ ID NO;
263), SYEH (SEQ ID NO;
264), SYEW (SEQ ID NO;
265), SYKW (SEQ ID NO;
266), SYTY (SEQ ID NO;
267), TYDF (SEQ ID NO;
268), TYEF (SEQ ID NO;
269), TYEW (SEQ ID NO;
270), TYQW (SEQ ID NO;
271), TYTY (SEQ ID NO;
272), or VYEW (SEQ ID NO;
273).
- 217), HYTYTYDF (SEQ ID NO;
-
37. The humanized antibody or binding fragment thereof of claim 35, wherein the (XaXb)z motif is YXYXYX.
-
38. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises a X1X2X3X4X5Xn motif,
wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), wherein X5 is glutamine (Q), and wherein n is 27-54. -
39. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises Xn(XaXb)z motif,
wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of: - tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), wherein n is 27-54, and wherein z is 1-4.
-
40. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises a X1X2X3X4X5Xn(XaXb)z motif,
wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q), wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of: - tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), wherein n is 27-54, and wherein z is 1-4.
-
41. The humanized antibody or binding fragment thereof of claim 40, wherein the X1X2X3X4X5 motif is TTVHQ (SEQ ID NO:
- 153) or TSVHQ (SEQ ID NO;
154), and wherein the (XaXb)z motif is YXYXYX.
- 153) or TSVHQ (SEQ ID NO;
-
42. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises:
-
a CX1X2X3X4X5 motif, wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q), a cysteine motif selected from the group consisting of;
CX10CX5CX5CXCX7C (SEQ ID NO;
41), CX10CX6CX5CXCX15C (SEQ ID NO;
42), CX11CXCX5C (SEQ ID NO;
43), CX11CX5CX5CXCX7C (SEQ ID NO;
44), CX10CX6CX5CXCX13C (SEQ ID NO;
45), CX10CX5CXCX4CX8C (SEQ ID NO;
46), CX10CX6CX6CXCX7C (SEQ ID NO;
47), CX10CX4CX7CXCX8C (SEQ ID NO;
48), CX10CX4CX7CXCX7C (SEQ ID NO;
49), CX13CX8CX8C (SEQ ID NO;
50), CX10CX6CX5CXCX7C (SEQ ID NO;
51), CX10CX5CX5C (SEQ ID NO;
52), CX10CX5CX6CXCX7C (SEQ ID NO;
53), CX10CX6CX5CX7CX9C (SEQ ID NO;
54), CX9CX7CX5CXCX7C (SEQ ID NO;
55), CX10CX6CX5CXCX9C (SEQ ID NO;
56), CX10CXCX4CX5CX11C (SEQ ID NO;
57), CX7CX3CX6CX5CXCX5CX10C (SEQ ID NO;
58), CX10CXCX4CX5CXCX2CX3C (SEQ ID NO;
59), CX16CX5CXC (SEQ ID NO;
60), CX6CX4CXCX4CX5C (SEQ ID NO;
61), CX11CX4CX5CX6CX3C (SEQ ID NO;
62), CX8CX2CX6CX5C (SEQ ID NO;
63), CX10CX5CX5CXCX10C (SEQ ID NO;
64), CX10CXCX6CX4CXC (SEQ ID NO;
65), CX10CX5CX5CXCX2C (SEQ ID NO;
66), CX14CX2CX3CXCXC (SEQ ID NO;
67), CX15CX5CXC (SEQ ID NO;
68), CX4CX6CX9CX2CX11C (SEQ ID NO;
69), CX6CX4CX5CX5CX12C (SEQ ID NO;
70), CX7CX3CXCXCX4CX5CX9C (SEQ ID NO;
71), CX10CX6CX5C (SEQ ID NO;
72), CX7CX3CX5CX5CX9C (SEQ ID NO;
73), CX7CX5CXCX2C (SEQ ID NO;
74), CX10CXCX6C (SEQ ID NO;
75), CX10CX3CX3CX5CX7CXCX6C (SEQ ID NO;
76), CX10CX4CX5CX12CX2C (SEQ ID NO;
77), CX12CX4CX5CXCXCX9CX3C (SEQ ID NO;
78), CX12CX4CX5CX12CX2C (SEQ ID NO;
79), CX10CX6CX5CXCX11C (SEQ ID NO;
80), CX16CX5CXCXCX14C (SEQ ID NO;
81), CX10CX5CXCX8CX6C (SEQ ID NO;
82), CX12CX4CX5CX8CX2C (SEQ ID NO;
83), CX12CX5CX5CXCX8C (SEQ ID NO;
84), CX10CX6CX5CXCX4CXCX9C (SEQ ID NO;
85), CX11CX4CX5CX8CX2C (SEQ ID NO;
86), CX10CX6CX5CX8CX2C (SEQ ID NO;
87), CX10CX6CX5CXCX8C (SEQ ID NO;
88), CX10CX6CX5CXCX3CX8CX2C (SEQ ID NO;
89), CX10CX6CX5CX3CX8C (SEQ ID NO;
90), CX10CX6CX5CXCX2CX6CX5C (SEQ ID NO;
91), CX7CX6CX3CX3CX9C (SEQ ID NO;
92), CX9CX8CX5CX6CX5C (SEQ ID NO;
93), CX10CX2CX2CX7CXCX11CX5C (SEQ ID NO;
94), and CX10CX6CX5CXCX2CX8CX4C (SEQ ID NO;
95),a (XaXb)z motif, wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of;
tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), and wherein z is 1-4.
-
-
43. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises:
-
a CX1X2X3X4X5 motif, wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q); a cysteine motif selected from the group consisting of;
wherein the cysteine motif is selected from the group consisting of;
CCX3CXCX3CX2CCXCX5CX9CX5CXC (SEQ ID NO;
96), CX6CX2CX5CX4CCXCX4CX6CXC (SEQ ID NO;
97), CX7CXCX5CX4CCCX4CX6CXC (SEQ ID NO;
98), CX9CX3CXCX2CXCCCX6CX4C (SEQ ID NO;
99), CX5CX3CXCX4CX4CCX10CX2CC (SEQ ID NO;
100), CX5CXCX1CXCX3CCX3CX4CX10C (SEQ ID NO;
101), CX9CCCX3CX4CCCX5CX6C (SEQ ID NO;
102), CCX8CX5CX4CX3CX4CCXCX1C (SEQ ID NO;
103), CCX6CCX5CCCX4CX4CX12C (SEQ ID NO;
104), CX6CX2CX3CCCX4CX5CX3CX3C (SEQ ID NO;
105), CX3CX5CX6CX4CCXCX5CX4CXC (SEQ ID NO;
106), CX4CX4CCX4CX4CXCX11CX2CXC (SEQ ID NO;
107), CX5CX2CCX5CX4CCX3CCX7C (SEQ ID NO;
108), CX5CX5CX3CX2CXCCX4CX7CXC (SEQ ID NO;
109), CX3CX7CX3CX4CCXCX2CX5CX2C (SEQ ID NO;
110), CX9CX3CXCX4CCX5CCCX6C (SEQ ID NO;
111), CX9CX3CXCX2CXCCX6CX3CX3C (SEQ ID NO;
112), CX8CCXCX3CCX3CXCX3CX4C (SEQ ID NO;
113), CX9CCX4CX2CXCCXCX4CX3C (SEQ ID NO;
114), CX10CXCX3CX2CXCCX4CX5CXC (SEQ ID NO;
115), CX9CXCX3CX2CXCCX4CX5CXC (SEQ ID NO;
116), CX6CCXCX5CX4CCXCX5CX2C (SEQ ID NO;
117), CX6CCXCX3CXCCX3CX4CC (SEQ ID NO;
118), CX6CCXCX3CXCX2CXCX4CX8C (SEQ ID NO;
119), CX4CX2CCX3CXCX4CCX2CX3C (SEQ ID NO;
120), CX3CX5CX3CCCX4CX9C (SEQ ID NO;
121), CCX9CX3CXCCX3CX5C (SEQ ID NO;
122), CX9CX2CX3CX4CCX4CX5C (SEQ ID NO;
123), CX9CX7CX4CCXCX7CX3C (SEQ ID NO;
124), CX9CX3CCCX10CX2CX3C (SEQ ID NO;
125), CX3CX5CX5CX4CCX10CX6C (SEQ ID NO;
126), CX9CX5CX4CCXCX5CX4C (SEQ ID NO;
127), CX7CXCX6CX4CCCX10C (SEQ ID NO;
128), CX8CX2CX4CCX4CX3CX3C (SEQ ID NO;
129), CX7CX5CXCX4CCX7CX4C (SEQ ID NO;
130), CX11CX3CX4CCCX8CX2C (SEQ ID NO;
131), CX2CX3CX4CCX4CX5CX15C (SEQ ID NO;
132), CX9CX5CX4CCX7C (SEQ ID NO;
133), CX9CX7CX3CX2CX6C (SEQ ID NO;
134), CX9CX5CX4CCX14C (SEQ ID NO;
135), CX9CX5CX4CCX8C (SEQ ID NO;
136), CX9CX6CX4CCXC (SEQ ID NO;
137), CX5CCX7CX4CX12 (SEQ ID NO;
138), CX10CX3CX4CCX4C (SEQ ID NO;
139), CX9CX4CCX5CX4C (SEQ ID NO;
140), CX10CX3CX4CX7CXC (SEQ ID NO;
141), CX7CX7CX2CX2CX3C (SEQ ID NO;
142), CX9CX4CX4CCX6C (SEQ ID NO;
143), CX7CXCX3CXCX6C (SEQ ID NO;
144), CX7CXCX4CXCX4C (SEQ ID NO;
145), CX9CX5CX4C (SEQ ID NO;
146), CX3CX6CX8C (SEQ ID NO;
147), CX10CXCX4C (SEQ ID NO;
148), CX10CCX4C (SEQ ID NO;
149), CX15C (SEQ ID NO;
150), CX10C (SEQ ID NO;
151), and CX9C (SEQ ID NO;
152); anda (XaXb)z motif, wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of;
tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), and wherein z is 1-4.
-
-
44. The humanized antibody or binding fragment thereof of claim 20, wherein the ultralong CDR3 comprises an additional sequence that is a linker.
-
45. The humanized antibody or binding fragment thereof of claim 44, wherein the linker is linked to a C-terminus, a N-terminus, or both C-terminus and N-terminus of the non-antibody sequence.
-
46. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 is a ruminant CDR3.
-
47. The humanized antibody or binding fragment thereof of claim 46, wherein the ruminant is a cow.
-
48. The humanized antibody or binding fragment thereof of claim 1, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 735.
-
49. The humanized antibody or binding fragment thereof of claim 1, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 737.
-
50. The humanized antibody or binding fragment thereof of claim 1, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 739.
-
51. The humanized antibody or binding fragment thereof of claim 1, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 741.
-
52. The humanized antibody or binding fragment thereof of claim 1, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 743.
-
53. The humanized antibody or binding fragment thereof of claim 1, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 745.
-
54. The humanized antibody or binding fragment thereof of claim 1, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 747.
-
55. The humanized antibody or binding fragment thereof of claim 1, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 749.
-
56. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises an amino acid sequence of:
-
(i) any one of GSKHRLRDYFLYNE (SEQ ID NO;
501), GSKHRLRDYFLYN (SEQ ID NO;
502), GSKHRLRDYFLY (SEQ ID NO;
503), GSKHRLRDYFL (SEQ ID NO;
504), GSKHRLRDYF (SEQ ID NO;
505), GSKHRLRDY (SEQ ID NO;
506), or GSKHRLRD (SEQ ID NO;
507);(ii) any one of EAGGPDYRNGYNY (SEQ ID NO;
508), EAGGPDYRNGYN (SEQ ID NO;
509), EAGGPDYRNGY (SEQ ID NO;
510), EAGGPDYRNG (SEQ ID NO;
511), EAGGPDYRN (SEQ ID NO;
512), EAGGPDYR (SEQ ID NO;
513), EAGGPDY (SEQ ID NO;
514), or EAGGPD (SEQ ID NO;
515);(iii) any one of EAGGPIWHDDVKY (SEQ ID NO;
516), EAGGPIWHDDVK (SEQ ID NO;
517), EAGGPIWHDDV (SEQ ID NO;
518), EAGGPIWHDD (SEQ ID NO;
519), EAGGPIWHD (SEQ ID NO;
520), EAGGPIWH (SEQ ID NO;
521), EAGGPIW (SEQ ID NO;
522), or EAGGPI (SEQ ID NO;
523);(iv) any one of GTDYTIDDQGI (SEQ ID NO;
524), GTDYTIDDQG (SEQ ID NO;
525), GTDYTIDDQ (SEQ ID NO;
526), GTDYTIDD (SEQ ID NO;
527), GTDYTID (SEQ ID NO;
528), or GTDYTI (SEQ ID NO;
529);(v) any one of DKGDSDYDYNL (SEQ ID NO;
530), DKGDSDYDYN (SEQ ID NO;
531), DKGDSDYDY (SEQ ID NO;
532), DKGDSDYD (SEQ ID NO;
533), DKGDSDY (SEQ ID NO;
534), DKGDSD (SEQ ID NO;
535);(vi) TSVHQETKKYQS (SEQ ID NO;
498).
-
-
57. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises an amino acid sequence of:
-
(i) any one of YGPNYEEWGDYLATLDV (SEQ ID NO;
536), GPNYEEWGDYLATLDV (SEQ ID NO;
537), PNYEEWGDYLATLDV (SEQ ID NO;
538), NYEEWGDYLATLDV (SEQ ID NO;
539), YEEWGDYLATLDV (SEQ ID NO;
540), or EEWGDYLATLDV (SEQ ID NO;
541);(ii) any one of YDFYDGYYNYHYMDV (SEQ ID NO;
542), DFYDGYYNYHYMDV (SEQ ID NO;
543), FYDGYYNYHYMDV (SEQ ID NO;
544), YDGYYNYHYMDV (SEQ ID NO;
545), DGYYNYHYMDV (SEQ ID NO;
546), GYYNYHYMDV (SEQ ID NO;
547), or YYNYHYMDV (SEQ ID NO;
548);(iii) any one of YDFNDGYYNYHYMDV (SEQ ID NO;
549), DFYDGYYNYHYMDV (SEQ ID NO;
550), FYDGYYNYHYMDV (SEQ ID NO;
551), YDGYYNYHYMDV (SEQ ID NO;
552), DGYYNYHYMDV (SEQ ID NO;
553), or GYYNYHYMDV (SEQ ID NO;
554);(iv) any one of QGIRYQGSGTFWYFDV (SEQ ID NO;
555), GIRYQGSGTFWYFDV (SEQ ID NO;
556), IRYQGSGTFWYFDV (SEQ ID NO;
557), RYQGSGTFWYFDV (SEQ ID NO;
558), YQGSGTFWYFDV (SEQ ID NO;
559), QGSGTFWYFDV (SEQ ID NO;
560), GSGTFWYFDV (SEQ ID NO;
561), SGTFWYFDV (SEQ ID NO;
562), or GTFWYFDV (SEQ ID NO;
563);(v) any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569);
or(vi) SYTYNYEWHVDV (SEQ ID NO;
499).
-
-
58. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 comprises an amino acid sequence of:
-
(i) any one of GSKHRLRDYFLYNE (SEQ ID NO;
501), GSKHRLRDYFLYN (SEQ ID NO;
502), GSKHRLRDYFLY (SEQ ID NO;
503), GSKHRLRDYFL (SEQ ID NO;
504), GSKHRLRDYF (SEQ ID NO;
505), GSKHRLRDY (SEQ ID NO;
506), or GSKHRLRD (SEQ ID NO;
507), and any one of YGPNYEEWGDYLATLDV (SEQ ID NO;
536), GPNYEEWGDYLATLDV (SEQ ID NO;
537), PNYEEWGDYLATLDV (SEQ ID NO;
538), NYEEWGDYLATLDV (SEQ ID NO;
539), YEEWGDYLATLDV (SEQ ID NO;
540), or EEWGDYLATLDV (SEQ ID NO;
541);(ii) any one of EAGGPDYRNGYNY (SEQ ID NO;
508), EAGGPDYRNGYN (SEQ ID NO;
509), EAGGPDYRNGY (SEQ ID NO;
510), EAGGPDYRNG (SEQ ID NO;
511), EAGGPDYRN (SEQ ID NO;
512), EAGGPDYR (SEQ ID NO;
513), EAGGPDY (SEQ ID NO;
514), or EAGGPD (SEQ ID NO;
515), and any one of YDFYDGYYNYHYMDV (SEQ ID NO;
542), DFYDGYYNYHYMDV (SEQ ID NO;
543), FYDGYYNYHYMDV (SEQ ID NO;
544), YDGYYNYHYMDV (SEQ ID NO;
545), DGYYNYHYMDV (SEQ ID NO;
546), GYYNYHYMDV (SEQ ID NO;
547), or YYNYHYMDV (SEQ ID NO;
548);(iii) any one of EAGGPIWHDDVKY (SEQ ID NO;
516), EAGGPIWHDDVK (SEQ ID NO;
517), EAGGPIWHDDV (SEQ ID NO;
518), EAGGPIWHDD (SEQ ID NO;
519), EAGGPIWHD (SEQ ID NO;
520), EAGGPIWH (SEQ ID NO;
521), EAGGPIW (SEQ ID NO;
522), or EAGGPI (SEQ ID NO;
523), and any one of YDFNDGYYNYHYMDV (SEQ ID NO;
549), DFYDGYYNYHYMDV (SEQ ID NO;
550), FYDGYYNYHYMDV (SEQ ID NO;
551), YDGYYNYHYMDV (SEQ ID NO;
552), DGYYNYHYMDV (SEQ ID NO;
553), or GYYNYHYMDV (SEQ ID NO;
554);(iv) any one of GTDYTIDDQGI (SEQ ID NO;
524), GTDYTIDDQG (SEQ ID NO;
525), GTDYTIDDQ (SEQ ID NO;
526), GTDYTIDD (SEQ ID NO;
527), GTDYTID (SEQ ID NO;
528), or GTDYTI (SEQ ID NO;
529), and any one of QGIRYQGSGTFWYFDV (SEQ ID NO;
555), GIRYQGSGTFWYFDV (SEQ ID NO;
556), IRYQGSGTFWYFDV (SEQ ID NO;
557), RYQGSGTFWYFDV (SEQ ID NO;
558), YQGSGTFWYFDV (SEQ ID NO;
559), QGSGTFWYFDV (SEQ ID NO;
560), GSGTFWYFDV (SEQ ID NO;
561), SGTFWYFDV (SEQ ID NO;
562), or GTFWYFDV (SEQ ID NO;
563);(v) any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569), and any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569);
or(vi) TSVHQETKKYQS (SEQ ID NO;
498) and SYTYNYEWHVDV (SEQ ID NO;
499).
-
-
59. The humanized antibody or binding fragment thereof of claim 1, wherein the humanized antibody or binding fragment thereof comprises a light chain variable region comprising a sequence selected from the group of:
- (i) SEQ ID NO;
750, (ii) SEQ ID NO;
751, (iii) SEQ ID NO;
752, and (iv) SEQ ID NO;
753.
- (i) SEQ ID NO;
-
60. The humanized antibody or binding fragment thereof of claim 59, wherein the light chain variable region comprises a lambda light chain variable region sequence.
-
61. The humanized antibody or binding fragment thereof of claim 59, wherein the light chain variable region comprises a human lambda light chain variable region sequence.
-
62. The humanized antibody or binding fragment thereof of claim 59, wherein the light chain variable region comprises a VL1-51 germline sequence.
-
63. The humanized antibody or binding fragment thereof of claim 59, wherein the light chain variable region is derived from a VL1-51 germline sequence.
-
64. The humanized antibody or binding fragment thereof of claim 63, wherein the VL1-51 germline sequence comprises a CDR1 comprising Ile29Val and Asn32Gly substitution based on Kabat numbering.
-
65. The humanized antibody or binding fragment thereof of claim 63, wherein the VL1-51 germline sequence comprises a CDR2 comprising a substitution of DNN to GDT.
-
66. The humanized antibody or binding fragment thereof of claim 63, wherein the VL1-51 germline sequence comprises a CDR2 comprising a substitution of DNNKRP (SEQ ID NO:
- 471) to GDTSRA (SEQ ID NO;
472).
- 471) to GDTSRA (SEQ ID NO;
-
67. The humanized antibody or binding fragment thereof of claim 63, wherein the VL1-51 germline sequence comprises a S2A, T5N, P8S, A12G, A13S, and P14L substitution based on Kabat numbering.
-
68. The humanized antibody or binding fragment thereof of claim 63, wherein the VL1-51 germline sequence comprises a S2A, T5N, P8S, A12G, A13S, and P14L substitution based on Kabat numbering, and a CDR2 comprising a substitution of DNN to GDT.
-
69. The humanized antibody or binding fragment thereof of claim 1, wherein the humanized antibody or binding fragment thereof comprising:
- (a) a heavy chain variable region comprising a sequence selected from the group consisting of SEQ ID NO;
740, SEQ ID NO;
741, SEQ ID NO;
742, and SEQ ID NO;
743; and
(b) a light chain variable region comprising SEQ ID NO;
750.
- (a) a heavy chain variable region comprising a sequence selected from the group consisting of SEQ ID NO;
-
70. A polynucleotide encoding the heavy chain variable region of the humanized antibody or binding fragment thereof of any one of claims 1-69.
-
71. A polynucleotide encoding the light chain variable region of the humanized antibody or binding fragment thereof of any one of claims 59-69.
-
73. A vector comprising the polynucleotide of any one of claims 70-72.
-
74. A host cell comprising the vector of claim 73.
-
117. The library of claim 76, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 735.113.) The library of claim 71, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO;
737.
- 735.113.) The library of claim 71, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO;
-
214. The humanized antibody or binding fragment thereof of claim 59, wherein the light chain variable region comprises an amino acid sequence of SEQ ID NO:
- 750, an amino acid sequence of SEQ ID NO;
754, and an amino acid sequence of SEQ ID NO;
755.
- 750, an amino acid sequence of SEQ ID NO;
-
215. The humanized antibody or binding fragment thereof of claim 214, further comprising an amino acid sequence of SEQ ID NO:
- 756.
-
216. The humanized antibody or binding fragment thereof of claim 59, wherein the light chain variable region comprises an amino acid sequence of SEQ ID NO:
- 751, an amino acid sequence of SEQ ID NO;
754, and an amino acid sequence of SEQ ID NO;
755.
- 751, an amino acid sequence of SEQ ID NO;
-
217. The humanized antibody or binding fragment thereof of claim 216, further comprising an amino acid sequence of SEQ ID NO:
- 756.
-
218. The humanized antibody or binding fragment thereof of claim 59, wherein the light chain variable region comprises an amino acid sequence of SEQ ID NO:
- 752, an amino acid sequence of SEQ ID NO;
754, and an amino acid sequence of SEQ ID NO;
755.
- 752, an amino acid sequence of SEQ ID NO;
-
219. The humanized antibody or binding fragment thereof of claim 218, further comprising an amino acid sequence of SEQ ID NO:
- 756.
-
220. The humanized antibody or binding fragment thereof of claim 59, wherein the light chain variable region comprises an amino acid sequence of SEQ ID NO:
- 753, an amino acid sequence of SEQ ID NO;
754, and an amino acid sequence of SEQ ID NO;
755.
- 753, an amino acid sequence of SEQ ID NO;
-
221. The humanized antibody or binding fragment thereof of claim 220, further comprising an amino acid sequence of SEQ ID NO:
- 756.
-
222. The humanized antibody or binding fragment thereof of claim 1, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 737 and SEQ ID NO;
500, wherein the ultralong CDR3 comprises an amino acid sequence of SEQ ID NO;
498 and SEQ ID NO;
499.
- 737 and SEQ ID NO;
-
223. The humanized antibody or binding fragment thereof of claim 222, further comprising a light chain variable region comprising an amino acid sequence of SEQ ID NO:
- 750, an amino acid sequence of SEQ ID NO;
754, and an amino acid sequence of SEQ ID NO;
755.
- 750, an amino acid sequence of SEQ ID NO;
-
224. The humanized antibody or binding fragment thereof of claim 1, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 739 and SEQ ID NO;
500, wherein the ultralong CDR3 comprises an amino acid sequence of SEQ ID NO;
498 and SEQ ID NO;
499.
- 739 and SEQ ID NO;
-
225. The humanized antibody or binding fragment thereof of claim 224, further comprising a light chain variable region comprising an amino acid sequence of SEQ ID NO:
- 750, an amino acid sequence of SEQ ID NO;
754, and an amino acid sequence of SEQ ID NO;
755.
- 750, an amino acid sequence of SEQ ID NO;
-
2. The humanized antibody or binding fragment thereof of claim 1, wherein the ultralong CDR3 is 35 amino acids in length or longer, 40 amino acids in length or longer, 45 amino acids in length or longer, 50 amino acids in length or longer, 55 amino acids in length or longer, or 60 amino acids in length or longer.
- (a) an amino acid sequence selected from the group consisting of;
-
72. A polynucleotide encoding a heavy chain variable region that comprises an ultralong CDR3, wherein the polynucleotide comprises a sequence selected from the group consisting of SEQ ID NO:
- 490, SEQ ID NO;
491, SEQ ID NO;
492, SEQ ID NO;
493, SEQ ID NO;
494, SEQ ID NO;
495, SEQ ID NO;
496, and SEQ ID NO;
497.
- 490, SEQ ID NO;
-
75. A nucleic acid library comprising a plurality of polynucleotides comprising sequences coding for humanized antibodies or binding fragments thereof, wherein the antibodies or binding fragments thereof comprise a heavy chain variable region comprising:
- (a) an amino acid sequence selected from the group consisting of;
(i) SEQ ID NO;
734 or SEQ ID NO;
735,(ii) SEQ ID NO;
736 or SEQ ID NO;
737,(iii) SEQ ID NO;
738 or SEQ ID NO;
739,(iv) SEQ ID NO;
740 or SEQ ID NO;
741,(v) SEQ ID NO;
742 or SEQ ID NO;
743,(vi) SEQ ID NO;
744 or SEQ ID NO;
745,(vii) SEQ ID NO;
746 or SEQ ID NO 747, and(viii) SEQ ID NO;
748 or SEQ ID NO;
749; and(b) an ultralong CDR3. - View Dependent Claims (77, 78, 79, 80)
-
77. The library of claim 75 or 76, wherein the ultralong CDR3 is 35 amino acids in length or longer, 40 amino acids in length or longer, 45 amino acids in length or longer, 50 amino acids in length or longer, 55 amino acids in length or longer, or 60 amino acids in length or longer.
-
78. The library of claim 77, wherein the ultralong CDR3 is 35 amino acids in length or longer.
-
79. The library of claim 75 or 76, wherein the ultralong CDR3 comprises 3 or more cysteine residues, 4 or more cysteine residues, 5 or more cysteine residues, 6 or more cysteine residues, 7 or more cysteine residues, 8 or more cysteine residues, 9 or more cysteine residues, 10 or more cysteine residues, 11 or more cysteine residues, or 12 or more cysteine residues.
-
80. The library of claim 79, wherein the ultralong CDR3 comprises 3 or more cysteine residues.
-
77. The library of claim 75 or 76, wherein the ultralong CDR3 is 35 amino acids in length or longer, 40 amino acids in length or longer, 45 amino acids in length or longer, 50 amino acids in length or longer, 55 amino acids in length or longer, or 60 amino acids in length or longer.
- (a) an amino acid sequence selected from the group consisting of;
-
76. A library of humanized antibodies or binding fragments thereof, wherein the antibodies or binding fragments thereof comprise a heavy chain variable region comprising:
- (a) an amino acid sequence selected from the group consisting of;
(i) SEQ ID NO;
734 or SEQ ID NO;
735,(ii) SEQ ID NO;
736 or SEQ ID NO;
737,(iii) SEQ ID NO;
738 or SEQ ID NO;
739,(iv) SEQ ID NO;
740 or SEQ ID NO;
741,(v) SEQ ID NO;
742 or SEQ ID NO;
743,(vi) SEQ ID NO;
744 or SEQ ID NO;
745,(vii) SEQ ID NO;
746 or SEQ ID NO 747, and(viii) SEQ ID NO;
748 or SEQ ID NO;
749; and(b) an ultralong CDR3. - View Dependent Claims (81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137)
-
81. The library of claim 76, wherein the antibodies or binding fragments thereof comprise a cysteine motif.
-
82. The library of claim 76, wherein the cysteine motif is selected from the group consisting of:
- CX10CX5CX5CXCX7C (SEQ ID NO;
41), CX10CX6CX5CXCX15C (SEQ ID NO;
42), CX11CXCX5C (SEQ ID NO;
43), CX11CX5CX5CXCX7C (SEQ ID NO;
44), CX10CX6CX5CXCX13C (SEQ ID NO;
45), CX10CX5CXCX4CX8C (SEQ ID NO;
46), CX10CX6CX6CXCX7C (SEQ ID NO;
47), CX10CX4CX7CXCX8C (SEQ ID NO;
48), CX10CX4CX7CXCX7C (SEQ ID NO;
49), CX13CX8CX8C (SEQ ID NO;
50), CX10CX6CX5CXCX7C (SEQ ID NO;
51), CX10CX5CX5C (SEQ ID NO;
52), CX10CX5CX6CXCX7C (SEQ ID NO;
53), CX10CX6CX5CX7CX9C (SEQ ID NO;
54), CX9CX7CX5CXCX7C (SEQ ID NO;
55), CX10CX6CX5CXCX9C (SEQ ID NO;
56), CX10CXCX4CX5CX11C (SEQ ID NO;
57), CX7CX3CX6CX5CXCX5CX10C (SEQ ID NO;
58), CX10CXCX4CX5CXCX2CX3C (SEQ ID NO;
59), CX16CX5CXC (SEQ ID NO;
60), CX6CX4CXCX4CX5C (SEQ ID NO;
61), CX11CX4CX5CX6CX3C (SEQ ID NO;
62), CX8CX2CX6CX5C (SEQ ID NO;
63), CX10CX5CX5CXCX10C (SEQ ID NO;
64), CX10CXCX6CX4CXC (SEQ ID NO;
65), CX10CX5CX5CXCX2C (SEQ ID NO;
66), CX14CX2CX3CXCXC (SEQ ID NO;
67), CX15CX5CXC (SEQ ID NO;
68), CX4CX6CX9CX2CX11C (SEQ ID NO;
69), CX6CX4CX5CX5CX12C (SEQ ID NO;
70), CX7CX3CXCXCX4CX5CX9C (SEQ ID NO;
71), CX10CX6CX5C (SEQ ID NO;
72), CX7CX3CX5CX5CX9C (SEQ ID NO;
73), CX7CX5CXCX2C (SEQ ID NO;
74), CX10CXCX6C (SEQ ID NO;
75), CX10CX3CX3CX5CX7CXCX6C (SEQ ID NO;
76), CX10CX4CX5CX12CX2C (SEQ ID NO;
77), CX12CX4CX5CXCXCX9CX3C (SEQ ID NO;
78), CX12CX4CX5CX12CX2C (SEQ ID NO;
79), CX10CX6CX5CXCX11C (SEQ ID NO;
80), CX16CX5CXCXCX14C (SEQ ID NO;
81), CX10CX5CXCX8CX6C (SEQ ID NO;
82), CX12CX4CX5CX8CX2C (SEQ ID NO;
83), CX12CX5CX5CXCX8C (SEQ ID NO;
84), CX10CX6CX5CXCX4CXCX9C (SEQ ID NO;
85), CX11CX4CX5CX8CX2C (SEQ ID NO;
86), CX10CX6CX5CX8CX2C (SEQ ID NO;
87), CX10CX6CX5CXCX8C (SEQ ID NO;
88), CX10CX6CX5CXCX3CX8CX2C (SEQ ID NO;
89), CX10CX6CX5CX3CX8C (SEQ ID NO;
90), CX10CX6CX5CXCX2CX6CX5C (SEQ ID NO;
91), CX7CX6CX3CX3CX9C (SEQ ID NO;
92), CX9CX8CX5CX6CX5C (SEQ ID NO;
93), CX10CX2CX2CX7CXCX11CX5C (SEQ ID NO;
94), and CX10CX6CX5CXCX2CX8CX4C (SEQ ID NO;
95).
- CX10CX5CX5CXCX7C (SEQ ID NO;
-
83. The library of claim 81, wherein the cysteine motif is selected from the group consisting of:
- CCX3CXCX3CX2CCXCX5CX9CX5CXC (SEQ ID NO;
96), CX6CX2CX5CX4CCXCX4CX6CXC (SEQ ID NO;
97), CX7CXCX5CX4CCCX4CX6CXC (SEQ ID NO;
98), CX9CX3CXCX2CXCCCX6CX4C (SEQ ID NO;
99), CX5CX3CXCX4CX4CCX10CX2CC (SEQ ID NO;
100), CX5CXCX1CXCX3CCX3CX4CX10C (SEQ ID NO;
101), CX9CCCX3CX4CCCX5CX6C (SEQ ID NO;
102), CCX8CX5CX4CX3CX4CCXCX1C (SEQ ID NO;
103), CCX6CCX5CCCX4CX4CX12C (SEQ ID NO;
104), CX6CX2CX3CCCX4CX5CX3CX3C (SEQ ID NO;
105), CX3CX5CX6CX4CCXCX5CX4CXC (SEQ ID NO;
106), CX4CX4CCX4CX4CXCX11CX2CXC (SEQ ID NO;
107), CX5CX2CCX5CX4CCX3CCX7C (SEQ ID NO;
108), CX5CX5CX3CX2CXCCX4CX7CXC (SEQ ID NO;
109), CX3CX7CX3CX4CCXCX2CX5CX2C (SEQ ID NO;
110), CX9CX3CXCX4CCX5CCCX6C (SEQ ID NO;
111), CX9CX3CXCX2CXCCX6CX3CX3C (SEQ ID NO;
112), CX8CCXCX3CCX3CXCX3CX4C (SEQ ID NO;
113), CX9CCX4CX2CXCCXCX4CX3C (SEQ ID NO;
114), CX10CXCX3CX2CXCCX4CX5CXC (SEQ ID NO;
115), CX9CXCX3CX2CXCCX4CX5CXC (SEQ ID NO;
116), CX6CCXCX5CX4CCXCX5CX2C (SEQ ID NO;
117), CX6CCXCX3CXCCX3CX4CC (SEQ ID NO;
118), CX6CCXCX3CXCX2CXCX4CX8C (SEQ ID NO;
119), CX4CX2CCX3CXCX4CCX2CX3C (SEQ ID NO;
120), CX3CX5CX3CCCX4CX9C (SEQ ID NO;
121), CCX9CX3CXCCX3CX5C (SEQ ID NO;
122), CX9CX2CX3CX4CCX4CX5C (SEQ ID NO;
123), CX9CX7CX4CCXCX7CX3C (SEQ ID NO;
124), CX9CX3CCCX10CX2CX3C (SEQ ID NO;
125), CX3CX5CX5CX4CCX10CX6C (SEQ ID NO;
126), CX9CX5CX4CCXCX5CX4C (SEQ ID NO;
127), CX7CXCX6CX4CCCX10C (SEQ ID NO;
128), CX8CX2CX4CCX4CX3CX3C (SEQ ID NO;
129), CX7CX5CXCX4CCX7CX4C (SEQ ID NO;
130), CX11CX3CX4CCCX8CX2C (SEQ ID NO;
131), CX2CX3CX4CCX4CX5CX15C (SEQ ID NO;
132), CX9CX5CX4CCX7C (SEQ ID NO;
133), CX9CX7CX3CX2CX6C (SEQ ID NO;
134), CX9CX5CX4CCX14C (SEQ ID NO;
135), CX9CX5CX4CCX8C (SEQ ID NO;
136), CX9CX6CX4CCXC (SEQ ID NO;
137), CX5CCX7CX4CX12 (SEQ ID NO;
138), CX10CX3CX4CCX4C (SEQ ID NO;
139), CX9CX4CCX5CX4C (SEQ ID NO;
140), CX10CX3CX4CX7CXC (SEQ ID NO;
141), CX7CX7CX2CX2CX3C (SEQ ID NO;
142), CX9CX4CX4CCX6C (SEQ ID NO;
143), CX7CXCX3CXCX6C (SEQ ID NO;
144), CX7CXCX4CXCX4C (SEQ ID NO;
145), CX9CX5CX4C (SEQ ID NO;
146), CX3CX6CX8C (SEQ ID NO;
147), CX10CXCX4C (SEQ ID NO;
148), CX10CCX4C (SEQ ID NO;
149), CX15C (SEQ ID NO;
150), CX10C (SEQ ID NO;
151), and CX9C (SEQ ID NO;
152).
- CCX3CXCX3CX2CCXCX5CX9CX5CXC (SEQ ID NO;
-
84. The library of claim 76, wherein the ultralong CDR3 comprises 2 to 6 disulfide bonds.
-
85. The library of claim 76, wherein the ultralong CDR3 comprises SEQ ID NO:
- 40 or a derivative thereof.
-
86. The library of claim 76, wherein the ultralong CDR3 comprises amino acid residues 3-6 of any of one SEQ ID NO:
- 1-4.
-
87. The library of claim 76, wherein the ultralong CDR3 comprises a non-human DH or a derivative thereof.
-
88. The library of claim 87, wherein the non-human DH is SEQ ID NO:
- 5, SEQ ID NO;
6, SEQ ID NO;
7, SEQ ID NO;
8, SEQ ID NO;
9, SEQ ID NO;
10, SEQ ID NO;
11, or SEQ ID NO;
12
- 5, SEQ ID NO;
-
89. The library of claim 76, wherein the ultralong CDR3 comprises a JH sequence or a derivative thereof.
-
90. The library of claim 89, wherein the JH sequence comprises amino acids as positions 5-15 of SEQ ID NO:
- 13, SEQ ID NO;
14, SEQ ID NO;
15, SEQ ID NO;
16, or SEQ ID NO;
17.
- 13, SEQ ID NO;
-
91. The library of claim 76, wherein the ultralong CDR3 comprises:
-
a sequence derived from a non-human VH sequence or a derivative thereof; a sequence derived from a non-human DH sequence or a derivative thereof; and
/ora sequence derived from a JH sequence or derivative thereof.
-
-
92. The library of claim 91, wherein the ultralong CDR3 comprises an additional amino acid sequence comprising two to six amino acid residues or more positioned between the VH sequence and the DH sequence.
-
93. The library of claim 92, wherein the additional amino acid sequence is selected from the group consisting of:
- IR, IF, SEQ ID NO;
18, SEQ ID NO;
19, SEQ ID NO;
20 or SEQ ID NO;
21.
- IR, IF, SEQ ID NO;
-
94. The library of claim 76, wherein the ultralong CDR3 comprises a sequence derived from or based on SEQ ID NO:
- 22, SEQ ID NO;
23, SEQ ID NO;
24, SEQ ID NO;
25, SEQ ID NO;
26, SEQ ID NO;
27, or SEQ ID NO;
28.
- 22, SEQ ID NO;
-
95. The library of claim 76, wherein the ultralong CDR3 comprises a non-bovine sequence or a non-antibody sequence.
-
96. The library of claim 95, wherein the non-antibody sequence is a synthetic sequence.
-
97. The library of claim 95, wherein the non-antibody sequence is a cytokine sequence, a lymphokine sequence, a chemokine sequence, a growth factor sequence, a hormone sequence, or a toxin sequence.
-
98. The library of claim 95, wherein the non-antibody sequence is an IL-8 sequence, an IL-21 sequence, an SDF-1 (alpha) sequence, a somatostatin sequence, a chlorotoxin sequence, a Pro-TxII sequence, a ziconotide sequence, an ADWX-1 sequence, an HsTx1 sequence, an OSK1 sequence, a Pi2 sequence, a Hongotoxin (HgTX) sequence, a Margatoxin sequence, an Agitoxin-2 sequence, a Pi3 sequence, a Kaliotoxin sequence, an Anuroctoxin sequence, a Charybdotoxin sequence, a Tityustoxin -K- alpha sequence, a Maurotoxin sequence, a Ceratotoxin 1 (CcoTx1) sequence, a CcoTx2 sequence, a CcoTx3 sequence, a Phrixotoxin 3 (PaurTx3) sequence, a Hanatoxin 1 sequence, a Phrixotoxin 1 sequence, a Huwentoxin-IV sequence, an α
- -conotoxin ImI sequence, an α
-conotoxin EpI sequence, an α
-conotoxin PnIA sequence, an α
-conotoxin PnIB sequence, an α
-conotoxin MII sequence, an α
-conotoxin AuIA sequence, an α
-conotoxin AuIB sequence, an α
-conotoxin AuIC sequence, a conotoxin κ
-PVIIA sequence, a charybdotoxin sequence, a neurotoxin B-IV sequence, a crotamine sequence, a ω
-GVIA (conotoxin) sequence, a κ
-hefutoxin 1 sequence, a Css4 sequence, a Bj-xtrIT sequence, a BcIV sequence, a Hm-1 sequence, a Hm-2 sequence, a GsAF-I (β
-theraphotoxin-Gr1b) sequence, a Protoxin I (ProTx-I sequence, a β
-theraphotoxin-Tp1a) sequence, a Protoxin II (ProTx II) sequence, a Huwentoxin I sequence, a μ
-Conotoxin PIIIA sequence, a Jingzhaotoxin-III (β
-TRTX-Cj1a) sequence, a GsAF-II (Kappa-theraphotoxin-Gr2c) sequence, a ShK (Stichodactyla toxin) sequence, a HsTx1 sequence, a Guangxitoxin 1E (GxTx-1E) sequence, a Maurotoxin sequence, a Charybdotoxin (ChTX) sequence, an Iberiotoxin (IbTx) sequence, a Leiurotoxin 1 (scyllatoxin) sequence, a Tamapin sequence, a Kaliotoxin-1 (KTX) sequence, a Purotoxin1 (PT-1) sequence, or a GpTx-1 sequence, a MOKA Toxin sequence, a OSK1 (P12, K16, D20) sequence, a OSK1 (K16, D20) sequence, a HmK sequence, a ShK (K16, Y26, K29) sequence, a ShK (K16) sequence, a ShK-A (K16) sequence, a ShK (K16, E30) sequence, a ShK (Q21) sequence, a ShK (L21) sequence, a ShK (F21) sequence, a ShK (121) sequence, or a ShK (A21) sequence.
- -conotoxin ImI sequence, an α
-
99. The library of claim 95, wherein the non-antibody sequence is any one of SEQ ID NOS:
- 475-481, 599-655, 666-698, 727-733, 808-810 and 831-835.
-
100. The library of claim 76, wherein the ultralong CDR3 comprises a X1X2X3X4X5 motif, wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q).
-
101. The library of claim 100, wherein the X1X2X3X4X5 motif is TTVHQ (SEQ ID NO:
- 153), TSVHQ (SEQ ID NO;
154), SSVTQ (SEQ ID NO;
155), STVHQ (SEQ ID NO;
156), ATVRQ (SEQ ID NO;
157), TTVYQ (SEQ ID NO;
158), SPVHQ (SEQ ID NO;
159), ATVYQ (SEQ ID NO;
160), TAVYQ (SEQ ID NO;
161), TNVHQ (SEQ ID NO;
162), ATVHQ (SEQ ID NO;
163), STVYQ (SEQ ID NO;
164), TIVHQ (SEQ ID NO;
165), AIVYQ (SEQ ID NO;
166), TTVFQ (SEQ ID NO;
167), AAVFQ (SEQ ID NO;
168), GTVHQ (SEQ ID NO;
169), ASVHQ (SEQ ID NO;
170), TAVFQ (SEQ ID NO;
171), ATVFQ (SEQ ID NO;
172), AAAHQ (SEQ ID NO;
173), VWYQ (SEQ ID NO;
174), GTVFQ (SEQ ID NO;
175), TAVHQ (SEQ ID NO;
176), ITVHQ (SEQ ID NO;
177), ITAHQ (SEQ ID NO;
178), VTVHQ (SEQ ID NO;
179);
AAVHQ (SEQ ID NO;
180), GTVYQ (SEQ ID NO;
181), TTVLQ (SEQ ID NO;
182), TTTHQ (SEQ ID NO;
183), or TTDYQ (SEQ ID NO;
184).
- 153), TSVHQ (SEQ ID NO;
-
102. The library of claim 76, wherein the ultralong CDR3 comprises a CX1X2X3X4X5 motif.
-
103. The library of claim 102, wherein the CX1X2X3X4X5 motif is CTTVHQ (SEQ ID NO:
- 185), CTSVHQ (SEQ ID NO;
186), CSSVTQ (SEQ ID NO;
187), CSTVHQ (SEQ ID NO;
188), CATVRQ (SEQ ID NO;
189), CTTVYQ (SEQ ID NO;
190), CSPVHQ (SEQ ID NO;
191), CATVYQ (SEQ ID NO;
192), CTAVYQ (SEQ ID NO;
193), CTNVHQ (SEQ ID NO;
194), CATVHQ (SEQ ID NO;
195), CSTVYQ (SEQ ID NO;
196), CTIVHQ (SEQ ID NO;
197), CAIVYQ (SEQ ID NO;
198), CTTVFQ (SEQ ID NO;
199), CAAVFQ (SEQ ID NO;
200), CGTVHQ (SEQ ID NO;
201), CASVHQ (SEQ ID NO;
202), CTAVFQ (SEQ ID NO;
203), CATVFQ (SEQ ID NO;
204), CAAAHQ (SEQ ID NO;
205), CVVVYQ (SEQ ID NO;
206), CGTVFQ (SEQ ID NO;
207), CTAVHQ (SEQ ID NO;
208), CITVHQ (SEQ ID NO;
209), CITAHQ (SEQ ID NO;
210), CVTVHQ (SEQ ID NO;
211);
CAAVHQ (SEQ ID NO;
212), CGTVYQ (SEQ ID NO;
213), CTTVLQ (SEQ ID NO;
214), CTTTHQ (SEQ ID NO;
215), or CTTDYQ (SEQ ID NO;
216).
- 185), CTSVHQ (SEQ ID NO;
-
104. The library of claim 76, wherein the ultralong CDR3 comprises a (XaXb)z motif, wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of:
- tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), and wherein z is 1-4.
-
105. The library of claim 104, wherein the (XaXb)z motif is CYTYNYEF (SEQ ID NO:
- 217), HYTYTYDF (SEQ ID NO;
218), HYTYTYEW (SEQ ID NO;
219), KHRYTYEW (SEQ ID NO;
220), NYIYKYSF (SEQ ID NO;
221), PYIYTYQF (SEQ ID NO;
222), SFTYTYEW (SEQ ID NO;
223), SYIYIYQW (SEQ ID NO;
224), SYNYTYSW (SEQ ID NO;
225), SYSYSYEY (SEQ ID NO;
226), SYTYNYDF (SEQ ID NO;
227), SYTYNYEW (SEQ ID NO;
228), SYTYNYQF (SEQ ID NO;
229), SYVWTHNF (SEQ ID NO;
230), TYKYVYEW (SEQ ID NO;
231), TYTYTYEF (SEQ ID NO;
232), TYTYTYEW (SEQ ID NO;
233), VFTYTYEF (SEQ ID NO;
234), AYTYEW (SEQ ID NO;
235), DYIYTY (SEQ ID NO;
236), IHSYEF (SEQ ID NO;
237), SFTYEF (SEQ ID NO;
238), SHSYEF (SEQ ID NO;
239), THTYEF (SEQ ID NO;
240), TWTYEF (SEQ ID NO;
241), TYNYEW (SEQ ID NO;
242), TYSYEF (SEQ ID NO;
243), TYSYEH (SEQ ID NO;
244), TYTYDF (SEQ ID NO;
245), TYTYEF (SEQ ID NO;
246), TYTYEW (SEQ ID NO;
247), AYEF (SEQ ID NO;
248), AYSF (SEQ ID NO;
249), AYSY (SEQ ID NO;
250), CYSF (SEQ ID NO;
251), DYTY (SEQ ID NO;
252), KYEH (SEQ ID NO;
253), KYEW (SEQ ID NO;
254), MYEF (SEQ ID NO;
255), NWIY (SEQ ID NO;
256), NYDY (SEQ ID NO;
257), NYQW (SEQ ID NO;
258), NYSF (SEQ ID NO;
259), PYEW (SEQ ID NO;
260), RYNW (SEQ ID NO;
261), RYTY (SEQ ID NO;
262), SYEF (SEQ ID NO;
263), SYEH (SEQ ID NO;
264), SYEW (SEQ ID NO;
265), SYKW (SEQ ID NO;
266), SYTY (SEQ ID NO;
267), TYDF (SEQ ID NO;
268), TYEF (SEQ ID NO;
269), TYEW (SEQ ID NO;
270), TYQW (SEQ ID NO;
271), TYTY (SEQ ID NO;
272), or VYEW (SEQ ID NO;
273).
- 217), HYTYTYDF (SEQ ID NO;
-
106. The library of claim 104, wherein the (XaXb)z motif is YXYXYX.
-
107. The library of claim 76, wherein the ultralong CDR3 comprises a X1X2X3X4X5Xn motif, wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q), and wherein n is 27-54.
-
108. The library of claim 76, wherein the ultralong CDR3 comprises Xn(XaXb)z motif, wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of:
- tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), wherein n is 27-54, and wherein z is 1-4.
-
109. The library of claim 76, wherein the ultralong CDR3 comprises a X1X2X3X4X5Xn(XaXb)z motif,
wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), wherein X5 is glutamine (Q), Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of: - tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), wherein n is 27-54, and wherein z is 1-4.
-
110. The library of claim 109, wherein the X1X2X3X4X5 motif is TTVHQ (SEQ ID NO:
- 153) or TSVHQ (SEQ ID NO;
154), and wherein the (XaXb)z motif is YXYXYX.
- 153) or TSVHQ (SEQ ID NO;
-
111. The library of claim 76, wherein the ultralong CDR3 comprises:
-
a CX1X2X3X4X5 motif, wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q), a cysteine motif selected from the group consisting of;
CX10CX5CX5CXCX7C (SEQ ID NO;
41), CX10CX6CX5CXCX15C (SEQ ID NO;
42), CX11CXCX5C (SEQ ID NO;
43), CX11CX5CX5CXCX7C (SEQ ID NO;
44), CX10CX6CX5CXCX13C (SEQ ID NO;
45), CX10CX5CXCX4CX8C (SEQ ID NO;
46), CX10CX6CX6CXCX7C (SEQ ID NO;
47), CX10CX4CX7CXCX8C (SEQ ID NO;
48), CX10CX4CX7CXCX7C (SEQ ID NO;
49), CX13CX8CX8C (SEQ ID NO;
50), CX10CX6CX5CXCX7C (SEQ ID NO;
51), CX10CX5CX5C (SEQ ID NO;
52), CX10CX5CX6CXCX7C (SEQ ID NO;
53), CX10CX6CX5CX7CX8C (SEQ ID NO;
54), CX9CX7CX5CXCX7C (SEQ ID NO;
55), CX10CX6CX5CXCX8C (SEQ ID NO;
56), CX10CXCX4CX5CX11C (SEQ ID NO;
57), CX7CX3CX6CX5CXCX5CX10C (SEQ ID NO;
58), CX10CXCX4CX5CXCX2CX3C (SEQ ID NO;
59), CX16CX5CXC (SEQ ID NO;
60), CX6CX4CXCX4CX5C (SEQ ID NO;
61), CX11CX4CX5CX6CX3C (SEQ ID NO;
62), CX8CX2CX6CX5C (SEQ ID NO;
63), CX10CX5CX5CXCX10C (SEQ ID NO;
64), CX10CXCX6CX4CXC (SEQ ID NO;
65), CX10CX5CX5CXCX2C (SEQ ID NO;
66), CX14CX2CX3CXCXC (SEQ ID NO;
67), CX15CX5CXC (SEQ ID NO;
68), CX4CX6CX9CX2CX11C (SEQ ID NO;
69), CX6CX4CX5CX5CX12C (SEQ ID NO;
70), CX7CX3CXCXCX4CX5CX9C (SEQ ID NO;
71), CX10CX6CX5C (SEQ ID NO;
72), CX7CX3CX5CX5CX9C (SEQ ID NO;
73), CX7CX5CXCX2C (SEQ ID NO;
74), CX10CXCX6C (SEQ ID NO;
75), CX10CX3CX3CX5CX7CXCX6C (SEQ ID NO;
76), CX10CX4CX5CX12CX2C (SEQ ID NO;
77), CX12CX4CX5CXCXCX9CX3C (SEQ ID NO;
78), CX12CX4CX5CX12CX2C (SEQ ID NO;
79), CX10CX6CX5CXCX11C (SEQ ID NO;
80), CX16CX5CXCXCX14C (SEQ ID NO;
81), CX10CX5CXCX8CX6C (SEQ ID NO;
82), CX12CX4CX5CX8CX2C (SEQ ID NO;
83), CX12CX5CX5CXCX8C (SEQ ID NO;
84), CX10CX6CX5CXCX4CXCX8C (SEQ ID NO;
85), CX11CX4CX5CX8CX2C (SEQ ID NO;
86), CX10CX6CX5CX8CX2C (SEQ ID NO;
87), CX10CX6CX5CXCX8C (SEQ ID NO;
88), CX10CX6CX5CXCX3CX8CX2C (SEQ ID NO;
89), CX10CX6CX5CX3CX8C (SEQ ID NO;
90), CX10CX6CX5CXCX2CX6CX5C (SEQ ID NO;
91), CX7CX6CX3CX3CX9C (SEQ ID NO;
92), CX9CX8CX5CX6CX5C (SEQ ID NO;
93), CX10CX2CX2CX7CXCX11CX5C (SEQ ID NO;
94), and CX10CX6CX5CXCX2CX8CX4C (SEQ ID NO;
95), anda (XaXb)z motif, Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of;
tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), and wherein z is 1-4.
-
-
112. The library of claim 76, wherein the ultralong CDR3 comprises:
-
a CX1X2X3X4X5 motif, wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q); a cysteine motif selected from the group consisting of;
wherein the cysteine motif is selected from the group consisting of;
CCX3CXCX3CX2CCXCX5CX9CX5CXC (SEQ ID NO;
96), CX6CX2CX5CX4CCXCX4CX6CXC (SEQ ID NO;
97), CX7CXCX5CX4CCCX4CX6CXC (SEQ ID NO;
98), CX9CX3CXCX2CXCCCX6CX4C (SEQ ID NO;
99), CX5CX3CXCX4CX4CCX10CX2CC (SEQ ID NO;
100), CX5CXCX1CXCX3CCX3CX4CX10C (SEQ ID NO;
101), CX9CCCX3CX4CCCX5CX6C (SEQ ID NO;
102), CCX8CX5CX4CX3CX4CCXCX1C (SEQ ID NO;
103), CCX6CCX5CCCX4CX4CX12C (SEQ ID NO;
104), CX6CX2CX3CCCX4CX5CX3CX3C (SEQ ID NO;
105), CX3CX5CX6CX4CCXCX5CX4CXC (SEQ ID NO;
106), CX4CX4CCX4CX4CXCX11CX2CXC (SEQ ID NO;
107), CX5CX2CCX5CX4CCX3CCX7C (SEQ ID NO;
108), CX5CX5CX3CX2CXCCX4CX7CXC (SEQ ID NO;
109), CX3CX7CX3CX4CCXCX2CX5CX2C (SEQ ID NO;
110), CX9CX3CXCX4CCX5CCCX6C (SEQ ID NO;
111), CX9CX3CXCX2CXCCX6CX3CX3C (SEQ ID NO;
112), CX8CCXCX3CCX3CXCX3CX4C (SEQ ID NO;
113), CX9CCX4CX2CXCCXCX4CX3C (SEQ ID NO;
114), CX10CXCX3CX2CXCCX4CX5CXC (SEQ ID NO;
115), CX9CXCX3CX2CXCCX4CX5CXC (SEQ ID NO;
116), CX6CCXCX5CX4CCXCX5CX2C (SEQ ID NO;
117), CX6CCXCX3CXCCX3CX4CC (SEQ ID NO;
118), CX6CCXCX3CXCX2CXCX4CX8C (SEQ ID NO;
119), CX4CX2CCX3CXCX4CCX2CX3C (SEQ ID NO;
120), CX3CX5CX3CCCX4CX9C (SEQ ID NO;
121), CCX9CX3CXCCX3CX5C (SEQ ID NO;
122), CX9CX2CX3CX4CCX4CX5C (SEQ ID NO;
123), CX9CX7CX4CCXCX7CX3C (SEQ ID NO;
124), CX9CX3CCCX10CX2CX3C (SEQ ID NO;
125), CX3CX5CX5CX4CCX10CX6C (SEQ ID NO;
126), CX9CX5CX4CCXCX5CX4C (SEQ ID NO;
127), CX7CXCX6CX4CCCX10C (SEQ ID NO;
128), CX8CX2CX4CCX4CX3CX3C (SEQ ID NO;
129), CX7CX5CXCX4CCX7CX4C (SEQ ID NO;
130), CX11CX3CX4CCCX8CX2C (SEQ ID NO;
131), CX2CX3CX4CCX4CX5CX15C (SEQ ID NO;
132), CX9CX5CX4CCX7C (SEQ ID NO;
133), CX9CX7CX3CX2CX6C (SEQ ID NO;
134), CX9CX5CX4CCX14C (SEQ ID NO;
135), CX9CX6CX4CCX8C (SEQ ID NO;
136), CX9CX6CX4CCXC (SEQ ID NO;
137), CX5CCX7CX4CX12 (SEQ ID NO;
138), CX10CX3CX4CCX4C (SEQ ID NO;
139), CX9CX4CCX5CX4C (SEQ ID NO;
140), CX10CX3CX4CX7CXC (SEQ ID NO;
141), CX7CX7CX2CX2CX3C (SEQ ID NO;
142), CX9CX4CX4CCX6C (SEQ ID NO;
143), CX7CXCX3CXCX6C (SEQ ID NO;
144), CX7CXCX4CXCX4C (SEQ ID NO;
145), CX9CX5CX4C (SEQ ID NO;
146), CX3CX6CX8C (SEQ ID NO;
147), CX10CXCX4C (SEQ ID NO;
148), CX10CCX4C (SEQ ID NO;
149), CX15C (SEQ ID NO;
150), CX10C (SEQ ID NO;
151), and CX9C (SEQ ID NO;
152); anda (XaXb)z motif, wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of;
tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), and wherein z is 1-4.
-
-
113. The library of claim 95, wherein the ultralong CDR3 comprises an additional sequence that is a linker.
-
114. The library of claim 113, wherein the linker is linked to a C-terminus, a N-terminus, or both C-terminus and N-terminus of the non-antibody sequence.
-
115. The library of claim 76, wherein the ultralong CDR3 is a ruminant CDR3.
-
116. The library of claim 115, wherein the ruminant is a cow.
-
118. The library of claim 76, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 739.
-
119. The library of claim 76, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 741.
-
120. The library of claim 76, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 743.
-
121. The library of claim 76, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 745.
-
122. The library of claim 76, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 747.
-
123. The library of claim 76, wherein the heavy chain variable region comprises an amino acid sequence of SEQ ID NO:
- 749.
-
124. The library of claim 76, wherein the ultralong CDR3 comprises an amino acid sequence of:
-
(i) any one of GSKHRLRDYFLYNE (SEQ ID NO;
501), GSKHRLRDYFLYN (SEQ ID NO;
502), GSKHRLRDYFLY (SEQ ID NO;
503), GSKHRLRDYFL (SEQ ID NO;
504), GSKHRLRDYF (SEQ ID NO;
505), GSKHRLRDY (SEQ ID NO;
506), or GSKHRLRD (SEQ ID NO;
507);(ii) any one of EAGGPDYRNGYNY (SEQ ID NO;
508), EAGGPDYRNGYN (SEQ ID NO;
509), EAGGPDYRNGY (SEQ ID NO;
510), EAGGPDYRNG (SEQ ID NO;
511), EAGGPDYRN (SEQ ID NO;
512), EAGGPDYR (SEQ ID NO;
513), EAGGPDY (SEQ ID NO;
514), or EAGGPD (SEQ ID NO;
515);(iii) any one of EAGGPIWHDDVKY (SEQ ID NO;
516), EAGGPIWHDDVK (SEQ ID NO;
517), EAGGPIWHDDV (SEQ ID NO;
518), EAGGPIWHDD (SEQ ID NO;
519), EAGGPIWHD (SEQ ID NO;
520), EAGGPIWH (SEQ ID NO;
521), EAGGPIW (SEQ ID NO;
522), or EAGGPI (SEQ ID NO;
523);(iv) any one of GTDYTIDDQGI (SEQ ID NO;
524), GTDYTIDDQG (SEQ ID NO;
525), GTDYTIDDQ (SEQ ID NO;
526), GTDYTIDD (SEQ ID NO;
527), GTDYTID (SEQ ID NO;
528), or GTDYTI (SEQ ID NO;
529);(v) any one of DKGDSDYDYNL (SEQ ID NO;
530), DKGDSDYDYN (SEQ ID NO;
531), DKGDSDYDY (SEQ ID NO;
532), DKGDSDYD (SEQ ID NO;
533), DKGDSDY (SEQ ID NO;
534), DKGDSD (SEQ ID NO;
535);
or(vi) TSVHQETKKYQS (SEQ ID NO;
498).
-
-
125. The library of claim 76, wherein the ultralong CDR3 comprises an amino acid sequence of:
-
(i) any one of YGPNYEEWGDYLATLDV (SEQ ID NO;
536), GPNYEEWGDYLATLDV (SEQ ID NO;
537), PNYEEWGDYLATLDV (SEQ ID NO;
538), NYEEWGDYLATLDV (SEQ ID NO;
539), YEEWGDYLATLDV (SEQ ID NO;
540), or EEWGDYLATLDV (SEQ ID NO;
541);(ii) any one of YDFYDGYYNYHYMDV (SEQ ID NO;
542), DFYDGYYNYHYMDV (SEQ ID NO;
543), FYDGYYNYHYMDV (SEQ ID NO;
544), YDGYYNYHYMDV (SEQ ID NO;
545), DGYYNYHYMDV (SEQ ID NO;
546), GYYNYHYMDV (SEQ ID NO;
547), or YYNYHYMDV (SEQ ID NO;
548);(iii) any one of YDFNDGYYNYHYMDV (SEQ ID NO;
549), DFYDGYYNYHYMDV (SEQ ID NO;
550), FYDGYYNYHYMDV (SEQ ID NO;
551), YDGYYNYHYMDV (SEQ ID NO;
552), DGYYNYHYMDV (SEQ ID NO;
553), or GYYNYHYMDV (SEQ ID NO;
554);(iv) any one of QGIRYQGSGTFWYFDV (SEQ ID NO;
555), GIRYQGSGTFWYFDV (SEQ ID NO;
556), IRYQGSGTFWYFDV (SEQ ID NO;
557), RYQGSGTFWYFDV (SEQ ID NO;
558), YQGSGTFWYFDV (SEQ ID NO;
559), QGSGTFWYFDV (SEQ ID NO;
560), GSGTFWYFDV (SEQ ID NO;
561), SGTFWYFDV (SEQ ID NO;
562), or GTFWYFDV (SEQ ID NO;
563);(v) any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569);
or(vi) SYTYNYEWHVDV (SEQ ID NO;
499).
-
-
126. The library of claim 76, wherein the humanized antibody or binding fragment thereof comprises a light chain variable region comprising a sequence selected from the group of:
- (i) SEQ ID NO;
750, (ii) SEQ ID NO;
751, (iii) SEQ ID NO;
752, and (iv) SEQ ID NO;
753.
- (i) SEQ ID NO;
-
127. The library of claim 126, wherein the light chain variable region comprises a lambda light chain variable region sequence.
-
128. The library of claim 126, wherein the light chain variable region sequence comprises a human lambda light chain variable region sequence.
-
129. The library of claim 126, wherein the light chain variable region sequence comprises a VL1-51 germline sequence.
-
130. The library of claim 126, wherein the light chain variable region is derived from a VL1-51 germline sequence.
-
131. The library of claim 130, wherein the VL1-51 germline sequence comprises a CDR1 comprising Ile29Val and Asn32Gly substitution based on Kabat numbering.
-
132. The library of claim 130, wherein the VL1-51 germline sequence comprises a CDR2 comprising a substitution of DNN to GDT.
-
133. The library of claim 130, wherein the VL1-51 germline sequence comprises a CDR2 comprising a substitution of DNNKRP (SEQ ID NO:
- 471) to GDTSRA (SEQ ID NO;
472).
- 471) to GDTSRA (SEQ ID NO;
-
134. The library of claim 130, wherein the VL1-51 germline sequence comprises a S2A, T5N, P8S, A12G, A13S, and P14L substitution based on Kabat numbering.
-
135. The library of claim 130, wherein the VL1-51 germline sequence comprises a S2A, T5N, P8S, A12G, A13S, and P14L substitution based on Kabat numbering, and a CDR2 comprising a substitution of DNN to GDT.
-
136. The library of claim 76, wherein the humanized antibody or binding fragment thereof comprising (a) a heavy chain variable region comprising a sequence selected from the group consisting of SEQ ID NO:
- 740, SEQ ID NO;
741, SEQ ID NO;
742, and SEQ ID NO;
743; and
(b) a light chain variable region comprising SEQ ID NO;
750.
- 740, SEQ ID NO;
-
137. The library of any one of claims 76-136, wherein the humanized antibodies or binding fragments thereof are present in a spatially addressed format.
-
81. The library of claim 76, wherein the antibodies or binding fragments thereof comprise a cysteine motif.
- (a) an amino acid sequence selected from the group consisting of;
-
138. A method of humanizing an antibody variable region comprising the step of genetically combining a nucleic acid sequence encoding an ultralong CDR3 with a nucleic acid sequence encoding a variable region sequence selected from the group consisting of:
-
(i) SEQ ID NO;
734 or SEQ ID NO;
735,(ii) SEQ ID NO;
736 or SEQ ID NO;
737,(iii) SEQ ID NO;
738 or SEQ ID NO;
739,(iv) SEQ ID NO;
740 or SEQ ID NO;
741,(v) SEQ ID NO;
742 or SEQ ID NO;
743,(vi) SEQ ID NO;
744 or SEQ ID NO;
745,(vii) SEQ ID NO;
746 or SEQ ID NO;
747, and(viii) SEQ ID NO;
748 or SEQ ID NO;
749.
-
-
139. A method of generating a library of humanized antibodies that comprises an ultralong CDR3, the method comprising:
-
a.) combining a nucleic acid sequence encoding an ultralong CDR3 with a nucleic acid sequence encoding a variable region sequence selected from the group consisting of; (i) SEQ ID NO;
734 or SEQ ID NO;
735,(ii) SEQ ID NO;
736 or SEQ ID NO;
737,(iii) SEQ ID NO;
738 or SEQ ID NO;
739,(iv) SEQ ID NO;
740 or SEQ ID NO;
741,(v) SEQ ID NO;
742 or SEQ ID NO;
743,(vi) SEQ ID NO;
744 or SEQ ID NO;
745,(vii) SEQ ID NO;
746 or SEQ ID NO;
747, and(viii) SEQ ID NO;
748 or SEQ ID NO;
749,to produce nucleic acids encoding for humanized antibodies that comprises an ultralong CDR3; and b.) expressing the nucleic acids encoding for humanized antibodies that comprises an ultralong CDR3 to generate a library of humanized antibodies that comprises an ultralong CDR3.
-
-
140. A method of generating a library of humanized antibodies or binding fragments thereof comprising an ultralong CDR3 that comprises a non-antibody sequence, the method comprising:
-
a.) combining a nucleic acid sequence encoding an ultralong CDR3, a nucleic acid sequence encoding a variable region sequence selected from the group consisting of; (i) SEQ ID NO;
734 or SEQ ID NO;
735,(ii) SEQ ID NO;
736 or SEQ ID NO;
737,(iii) SEQ ID NO;
738 or SEQ ID NO;
739,(iv) SEQ ID NO;
740 or SEQ ID NO;
741,(v) SEQ ID NO;
742 or SEQ ID NO;
743,(vi) SEQ ID NO;
744 or SEQ ID NO;
745,(vii) SEQ ID NO;
746 or SEQ ID NO;
747, and(viii) SEQ ID NO;
748 or SEQ ID NO;
749,and a nucleic acid sequence encoding a non-antibody sequence to produce nucleic acids encoding humanized antibodies or binding fragments thereof comprising an ultralong CDR3 and a non-antibody sequence, and b.) expressing the nucleic acids encoding humanized antibodies or binding fragments thereof comprising an ultralong CDR3 and a non-antibody sequence to generate a library of humanized antibodies or binding fragments thereof comprising an ultralong CDR3 and a non-antibody sequence.
-
-
141. A library of humanized antibodies or binding fragments thereof comprising an ultralong CDR3 that comprises a non-antibody sequence.
-
142. A method of generating a library of humanized antibodies or binding fragments thereof comprising an ultralong CDR3 that comprises a cysteine motif, the method comprising:
-
a.) combining a human variable region framework (FR) sequence, and a nucleic acid sequence encoding an ultralong CDR3 and a cysteine motif; b.) introducing one or more nucleotide changes to the nucleic acid sequence encoding one or more amino acid residues that are positioned between one or more cysteine residues in the cysteine motif for nucleotides encoding different amino acid residues to produce nucleic acids encoding humanized antibodies or binding fragments thereof comprising an ultralong CDR3 and a cysteine motif with one or more nucleotide changes introduced between one or more cysteine residues in the cysteine domain; and c.) expressing the nucleic acids encoding humanized antibodies or binding fragments thereof comprising an ultralong CDR3 and a cysteine motif with one or more nucleotide changes introduced between one or more cysteine residues in the cysteine domain to generate a library of humanized antibodies or binding fragments thereof comprising an ultralong CDR3 and a cysteine motif with one or more amino acid changes introduced between one or more cysteine residues in the cysteine domain. - View Dependent Claims (180, 181, 182, 183, 212)
-
180. The antibody heavy chain variable region of any one of claims 142-172, wherein the ultralong CDR3 comprises a linker sequence.
-
181. The antibody heavy chain variable region of claim 180, wherein the linker is linked to a N-terminus, a C-terminus, or both N-terminus and C-terminus of the non-antibody sequence.
-
182. The antibody heavy chain variable region of claim 180 or 181, wherein the linker comprises one or more amino acid sequence selected from the group consisting of SEQ ID NO:
- 575 to 598, 699 to 726 and 813 to 830, or any combination thereof.
-
183. The antibody heavy chain variable region of claim 181, wherein the linkers linked to both N-terminus and C-terminus have the same or different amino acid sequence.
-
212. The antibody heavy chain variable region of claim 211, wherein the ultralong CDR3 comprises a X1X2X3X4X5Xn(XaXb)z motif,
wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q), wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of: - tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), wherein n is 27-54, and wherein z is 1-4. 206.) The antibody heavy chain variable region of any one of claims 142 to 145, wherein V1 comprises an amino acid sequence of SEQ ID NO;
737, wherein the ultralong CDR3 comprises an amino acid sequence of SEQ ID NO;
498 and SEQ ID NO;
499, and wherein V2 comprises an amino acid sequence of SEQ ID NO;
500.
- tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), wherein n is 27-54, and wherein z is 1-4. 206.) The antibody heavy chain variable region of any one of claims 142 to 145, wherein V1 comprises an amino acid sequence of SEQ ID NO;
-
180. The antibody heavy chain variable region of any one of claims 142-172, wherein the ultralong CDR3 comprises a linker sequence.
-
-
143. A library of humanized antibodies or binding fragments thereof comprising an ultralong CDR3 that comprises a cysteine motif, wherein the antibodies or binding fragments comprise one or more substitutions of amino acid residues that are positioned between cysteine residues in the cysteine motif.
-
144. A method of generating a library of humanized antibodies or binding fragments thereof comprising a bovine ultralong CDR3, the method comprising:
-
a.) combining a nucleic acid sequence encoding a human variable region framework (FR) sequence and a nucleic acid encoding a bovine ultralong CDR3, and b.) expressing the nucleic acids encoding a human variable region framework (FR) sequence and a nucleic acid encoding a bovine ultralong CDR3 to generate a library of humanized antibodies or binding fragments thereof comprising a bovine ultralong CDR3.
-
-
145. A library of humanized antibodies or binding fragments thereof comprising a heavy chain variable region comprising:
- (a) an amino acid sequence selected from the group consisting of;
(i) SEQ ID NO;
734 or SEQ ID NO;
735,(ii) SEQ ID NO;
736 or SEQ ID NO;
737,(iii) SEQ ID NO;
738 or SEQ ID NO;
739,(iv) SEQ ID NO;
740 or SEQ ID NO;
741,(v) SEQ ID NO;
742 or SEQ ID NO;
743,(vi) SEQ ID NO;
744 or SEQ ID NO;
745,(vii) SEQ ID NO;
746 or SEQ ID NO;
747, and(viii) SEQ ID NO;
748 or SEQ ID NO;
749; and(b) a bovine ultralong CDR3.
- (a) an amino acid sequence selected from the group consisting of;
-
146. An antibody heavy chain variable region comprising a sequence of the formula V1-X-V2, wherein V1 comprises an amino acid sequence selected from the group consisting of:
-
(i) QVQLREWGAGLLKPSETLSLTCAVYGGSFSGYYWSWIRQPPGKGLEWIGEINHS GSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
735),(ii) QVQLREWGAGLLKPSETLSLTCAVYGGSFSDKYWSWIRQPPGKGLEWIGEINH SGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
737),(iii) QVQLREWGAGLLKPSETLSLTCAVYGGSFSGYYWSWIRQPPGKGLEWIGSINH SGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
739),(iv) QVQLREWGAGLLKPSETLSLTCAVYGGSFSDKYWSWIRQPPGKGLEWIGSINH SGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
741),(v) QVQLREWGAGLLKPSETLSLTCTASGFSLSDKAVGWIRQPPGKGLEWIGEINHS GSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
743),(vi) QVQLREWGAGLLKPSETLSLTCAVYGGLGSIDTGGNTGSFSGYYWSWIRQPPG KGLEWYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
745),(vii) QVQLREWGAGLLKPSETLSLTCTASGFSLSDKAVGWIRQPPGKGLEWIGSINH SGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
747), and(viii) QVQLREWGAGLLKPSETLSLTCTASGFSLSDKAVGWIRQPPGKGLEWLGSIDT GGNTGYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
749);wherein X comprises an ultralong CDR3; and wherein V2 comprises an amino acid sequence selected from the group consisting of; (i) WGHGTAVTVSS (SEQ ID NO;
570),(ii) WGKGTTVTVSS (SEQ ID NO;
571),(iii) WGKGTTVTVSS (SEQ ID NO;
572),(iv) WGRGTLVTVSS (SEQ ID NO;
573),(v) WGKGTTVTVSS (SEQ ID NO;
574), and(vi) WGQGLLVTVSS (SEQ ID NO;
500). - View Dependent Claims (147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 184, 185, 186, 187, 188, 189, 190, 191, 194, 195, 196, 197, 198, 199, 200, 201, 213)
-
147. ). The antibody heavy chain variable region of claim 146, wherein the ultralong CDR3 comprises an amino acid sequence of:
-
(i) any one of GSKHRLRDYFLYNE (SEQ ID NO;
501), GSKHRLRDYFLYN (SEQ ID NO;
502), GSKHRLRDYFLY (SEQ ID NO;
503), GSKHRLRDYFL (SEQ ID NO;
504), GSKHRLRDYF (SEQ ID NO;
505), GSKHRLRDY (SEQ ID NO;
506), or GSKHRLRD (SEQ ID NO;
507);(ii) any one of EAGGPDYRNGYNY (SEQ ID NO;
508), EAGGPDYRNGYN (SEQ ID NO;
509), EAGGPDYRNGY (SEQ ID NO;
510), EAGGPDYRNG (SEQ ID NO;
511), EAGGPDYRN (SEQ ID NO;
512), EAGGPDYR (SEQ ID NO;
513), EAGGPDY (SEQ ID NO;
514), or EAGGPD (SEQ ID NO;
515);(iii) any one of EAGGPIWHDDVKY (SEQ ID NO;
516), EAGGPIWHDDVK (SEQ ID NO;
517), EAGGPIWHDDV (SEQ ID NO;
518), EAGGPIWHDD (SEQ ID NO;
519), EAGGPIWHD (SEQ ID NO;
520), EAGGPIWH (SEQ ID NO;
521), EAGGPIW (SEQ ID NO;
522), or EAGGPI (SEQ ID NO;
523);(iv) any one of GTDYTIDDQGI (SEQ ID NO;
524), GTDYTIDDQG (SEQ ID NO;
525), GTDYTIDDQ (SEQ ID NO;
526), GTDYTIDD (SEQ ID NO;
527), GTDYTID (SEQ ID NO;
528), or GTDYTI (SEQ ID NO;
529);(v) any one of DKGDSDYDYNL (SEQ ID NO;
530), DKGDSDYDYN (SEQ ID NO;
531), DKGDSDYDY (SEQ ID NO;
532), DKGDSDYD (SEQ ID NO;
533), DKGDSDY (SEQ ID NO;
534), DKGDSD (SEQ ID NO;
535);
or(vi) TSVHQETKKYQS (SEQ ID NO;
498).
-
-
148. The antibody heavy chain variable region of claim 146, wherein the ultralong CDR3 comprises an amino acid sequence of:
-
(i) any one of YGPNYEEWGDYLATLDV (SEQ ID NO;
536), GPNYEEWGDYLATLDV (SEQ ID NO;
537), PNYEEWGDYLATLDV (SEQ ID NO;
538), NYEEWGDYLATLDV (SEQ ID NO;
539), YEEWGDYLATLDV (SEQ ID NO;
540), or EEWGDYLATLDV (SEQ ID NO;
541);(ii) any one of YDFYDGYYNYHYMDV (SEQ ID NO;
542), DFYDGYYNYHYMDV (SEQ ID NO;
543), FYDGYYNYHYMDV (SEQ ID NO;
544), YDGYYNYHYMDV (SEQ ID NO;
545), DGYYNYHYMDV (SEQ ID NO;
546), GYYNYHYMDV (SEQ ID NO;
547), or YYNYHYMDV (SEQ ID NO;
548);(iii) any one of YDFNDGYYNYHYMDV (SEQ ID NO;
549), DFYDGYYNYHYMDV (SEQ ID NO;
550), FYDGYYNYHYMDV (SEQ ID NO;
551), YDGYYNYHYMDV (SEQ ID NO;
552), DGYYNYHYMDV (SEQ ID NO;
553), or GYYNYHYMDV (SEQ ID NO;
554);(iv) any one of QGIRYQGSGTFWYFDV (SEQ ID NO;
555), GIRYQGSGTFWYFDV (SEQ ID NO;
556), IRYQGSGTFWYFDV (SEQ ID NO;
557), RYQGSGTFWYFDV (SEQ ID NO;
558), YQGSGTFWYFDV (SEQ ID NO;
559), QGSGTFWYFDV (SEQ ID NO;
560), GSGTFWYFDV (SEQ ID NO;
561), SGTFWYFDV (SEQ ID NO;
562), or GTFWYFDV (SEQ ID NO;
563);(v) any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569);
or(vi) SYTYNYEWHVDV (SEQ ID NO;
499).
-
-
149. The antibody heavy chain variable region of claim 146, wherein the ultralong CDR3 comprises an amino acid sequence of:
-
(i) any one of GSKHRLRDYFLYNE (SEQ ID NO;
501), GSKHRLRDYFLYN (SEQ ID NO;
502), GSKHRLRDYFLY (SEQ ID NO;
503), GSKHRLRDYFL (SEQ ID NO;
504), GSKHRLRDYF (SEQ ID NO;
505), GSKHRLRDY (SEQ ID NO;
506), or GSKHRLRD (SEQ ID NO;
507), and any one of YGPNYEEWGDYLATLDV (SEQ ID NO;
536), GPNYEEWGDYLATLDV (SEQ ID NO;
537), PNYEEWGDYLATLDV (SEQ ID NO;
538), NYEEWGDYLATLDV (SEQ ID NO;
539), YEEWGDYLATLDV (SEQ ID NO;
540), or EEWGDYLATLDV (SEQ ID NO;
541);(ii) any one of EAGGPDYRNGYNY (SEQ ID NO;
508), EAGGPDYRNGYN (SEQ ID NO;
509), EAGGPDYRNGY (SEQ ID NO;
510), EAGGPDYRNG (SEQ ID NO;
511), EAGGPDYRN (SEQ ID NO;
512), EAGGPDYR (SEQ ID NO;
513), EAGGPDY (SEQ ID NO;
514), or EAGGPD (SEQ ID NO;
515), and any one of YDFYDGYYNYHYMDV (SEQ ID NO;
542), DFYDGYYNYHYMDV (SEQ ID NO;
543), FYDGYYNYHYMDV (SEQ ID NO;
544), YDGYYNYHYMDV (SEQ ID NO;
545), DGYYNYHYMDV (SEQ ID NO;
546), GYYNYHYMDV (SEQ ID NO;
547), or YYNYHYMDV (SEQ ID NO;
548);(iii) any one of EAGGPIWHDDVKY (SEQ ID NO;
516), EAGGPIWHDDVK (SEQ ID NO;
517), EAGGPIWHDDV (SEQ ID NO;
518), EAGGPIWHDD (SEQ ID NO;
519), EAGGPIWHD (SEQ ID NO;
520), EAGGPIWH (SEQ ID NO;
521), EAGGPIW (SEQ ID NO;
522), or EAGGPI (SEQ ID NO;
523), and any one of YDFNDGYYNYHYMDV (SEQ ID NO;
549), DFYDGYYNYHYMDV (SEQ ID NO;
550), FYDGYYNYHYMDV (SEQ ID NO;
551), YDGYYNYHYMDV (SEQ ID NO;
552), DGYYNYHYMDV (SEQ ID NO;
553), or GYYNYHYMDV (SEQ ID NO;
554);(iv) any one of GTDYTIDDQGI (SEQ ID NO;
524), GTDYTIDDQG (SEQ ID NO;
525), GTDYTIDDQ (SEQ ID NO;
526), GTDYTIDD (SEQ ID NO;
527), GTDYTID (SEQ ID NO;
528), or GTDYTI (SEQ ID NO;
529), and any one of QGIRYQGSGTFWYFDV (SEQ ID NO;
555), GIRYQGSGTFWYFDV (SEQ ID NO;
556), IRYQGSGTFWYFDV (SEQ ID NO;
557), RYQGSGTFWYFDV (SEQ ID NO;
558), YQGSGTFWYFDV (SEQ ID NO;
559), QGSGTFWYFDV (SEQ ID NO;
560), GSGTFWYFDV (SEQ ID NO;
561), SGTFWYFDV (SEQ ID NO;
562), or GTFWYFDV (SEQ ID NO;
563);(v) any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569), and any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569);
or(vi) TSVHQETKKYQS (SEQ ID NO;
498) and SYTYNYEWHVDV (SEQ ID NO;
499).
-
-
150. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of GSKHRLRDYFLYNE (SEQ ID NO;
501), GSKHRLRDYFLYN (SEQ ID NO;
502), GSKHRLRDYFLY (SEQ ID NO;
503), GSKHRLRDYFL (SEQ ID NO;
504), GSKHRLRDYF (SEQ ID NO;
505), GSKHRLRDY (SEQ ID NO;
506), or GSKHRLRD (SEQ ID NO;
507), and an amino acid sequence of any one of YGPNYEEWGDYLATLDV (SEQ ID NO;
536), GPNYEEWGDYLATLDV (SEQ ID NO;
537), PNYEEWGDYLATLDV (SEQ ID NO;
538), NYEEWGDYLATLDV (SEQ ID NO;
539), YEEWGDYLATLDV (SEQ ID NO;
540), or EEWGDYLATLDV (SEQ ID NO;
541),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
151. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of EAGGPDYRNGYNY (SEQ ID NO;
508), EAGGPDYRNGYN (SEQ ID NO;
509), EAGGPDYRNGY (SEQ ID NO;
510), EAGGPDYRNG (SEQ ID NO;
511), EAGGPDYRN (SEQ ID NO;
512), EAGGPDYR (SEQ ID NO;
513), EAGGPDY (SEQ ID NO;
514), or EAGGPD (SEQ ID NO;
515), and an amino acid sequence of any one of YDFYDGYYNYHYMDV (SEQ ID NO;
542), DFYDGYYNYHYMDV (SEQ ID NO;
543), FYDGYYNYHYMDV (SEQ ID NO;
544), YDGYYNYHYMDV (SEQ ID NO;
545), DGYYNYHYMDV (SEQ ID NO;
546), GYYNYHYMDV (SEQ ID NO;
547), or YYNYHYMDV (SEQ ID NO;
548),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
152. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of EAGGPIWHDDVKY (SEQ ID NO;
516), EAGGPIWHDDVK (SEQ ID NO;
517), EAGGPIWHDDV (SEQ ID NO;
518), EAGGPIWHDD (SEQ ID NO;
519), EAGGPIWHD (SEQ ID NO;
520), EAGGPIWH (SEQ ID NO;
521), EAGGPIW (SEQ ID NO;
522), or EAGGPI (SEQ ID NO;
523), and an amino acid sequence of any one of YDFNDGYYNYHYMDV (SEQ ID NO;
549), DFYDGYYNYHYMDV (SEQ ID NO;
550), FYDGYYNYHYMDV (SEQ ID NO;
551), YDGYYNYHYMDV (SEQ ID NO;
552), DGYYNYHYMDV (SEQ ID NO;
553), or GYYNYHYMDV (SEQ ID NO;
554),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
153. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of GTDYTIDDQGI (SEQ ID NO;
524), GTDYTIDDQG (SEQ ID NO;
525), GTDYTIDDQ (SEQ ID NO;
526), GTDYTIDD (SEQ ID NO;
527), GTDYTID (SEQ ID NO;
528), or GTDYTI (SEQ ID NO;
529), and an amino acid sequence of any one of QGIRYQGSGTFWYFDV (SEQ ID NO;
555), GIRYQGSGTFWYFDV (SEQ ID NO;
556), IRYQGSGTFWYFDV (SEQ ID NO;
557), RYQGSGTFWYFDV (SEQ ID NO;
558), YQGSGTFWYFDV (SEQ ID NO;
559), QGSGTFWYFDV (SEQ ID NO;
560), GSGTFWYFDV (SEQ ID NO;
561), SGTFWYFDV (SEQ ID NO;
562), or GTFWYFDV (SEQ ID NO;
563),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
154. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569), and any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
155. The antibody heavy chain variable region of any one of claims 146-154, wherein the ultralong CDR3 is 35 amino acids in length or longer, 40 amino acids in length or longer, 45 amino acids in length or longer, 50 amino acids in length or longer, 55 amino acids in length or longer, or 60 amino acids in length or longer.
-
156. The antibody heavy chain variable region of claim 155, wherein the ultralong CDR3 is 35 amino acids in length or longer.
-
157. The antibody heavy chain variable region of claim 146-156, wherein the ultralong CDR3 comprises a cysteine motif.
-
158. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of GSKHRLRDYFLYNE (SEQ ID NO;
501), GSKHRLRDYFLYN (SEQ ID NO;
502), GSKHRLRDYFLY (SEQ ID NO;
503), GSKHRLRDYFL (SEQ ID NO;
504), GSKHRLRDYF (SEQ ID NO;
505), GSKHRLRDY (SEQ ID NO;
506), or GSKHRLRD (SEQ ID NO;
507), a cysteine motif, and an amino acid sequence of any one of YGPNYEEWGDYLATLDV (SEQ ID NO;
536), GPNYEEWGDYLATLDV (SEQ ID NO;
537), PNYEEWGDYLATLDV (SEQ ID NO;
538), NYEEWGDYLATLDV (SEQ ID NO;
539), YEEWGDYLATLDV (SEQ ID NO;
540), or EEWGDYLATLDV (SEQ ID NO;
541), andwherein V2 comprises an amino acid sequence of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
159. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of EAGGPDYRNGYNY (SEQ ID NO;
508), EAGGPDYRNGYN (SEQ ID NO;
509), EAGGPDYRNGY (SEQ ID NO;
510), EAGGPDYRNG (SEQ ID NO;
511), EAGGPDYRN (SEQ ID NO;
512), EAGGPDYR (SEQ ID NO;
513), EAGGPDY (SEQ ID NO;
514), or EAGGPD (SEQ ID NO;
515), a cysteine motif, and an amino acid sequence of any one of YDFYDGYYNYHYMDV (SEQ ID NO;
542), DFYDGYYNYHYMDV (SEQ ID NO;
543), FYDGYYNYHYMDV (SEQ ID NO;
544), YDGYYNYHYMDV (SEQ ID NO;
545), DGYYNYHYMDV (SEQ ID NO;
546), GYYNYHYMDV (SEQ ID NO;
547), or YYNYHYMDV (SEQ ID NO;
548),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
160. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of EAGGPIWHDDVKY (SEQ ID NO;
516), EAGGPIWHDDVK (SEQ ID NO;
517), EAGGPIWHDDV (SEQ ID NO;
518), EAGGPIWHDD (SEQ ID NO;
519), EAGGPIWHD (SEQ ID NO;
520), EAGGPIWH (SEQ ID NO;
521), EAGGPIW (SEQ ID NO;
522), or EAGGPI (SEQ ID NO;
523), a cysteine motif, and an amino acid sequence of any one of YDFNDGYYNYHYMDV (SEQ ID NO;
549), DFYDGYYNYHYMDV (SEQ ID NO;
550), FYDGYYNYHYMDV (SEQ ID NO;
551), YDGYYNYHYMDV (SEQ ID NO;
552), DGYYNYHYMDV (SEQ ID NO;
553), or GYYNYHYMDV (SEQ ID NO;
554),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
161. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of GTDYTIDDQGI (SEQ ID NO;
524), GTDYTIDDQG (SEQ ID NO;
525), GTDYTIDDQ (SEQ ID NO;
526), GTDYTIDD (SEQ ID NO;
527), GTDYTID (SEQ ID NO;
528), or GTDYTI (SEQ ID NO;
529), a cysteine motif, and an amino acid sequence of any one of QGIRYQGSGTFWYFDV (SEQ ID NO;
555), GIRYQGSGTFWYFDV (SEQ ID NO;
556), IRYQGSGTFWYFDV (SEQ ID NO;
557), RYQGSGTFWYFDV (SEQ ID NO;
558), YQGSGTFWYFDV (SEQ ID NO;
559), QGSGTFWYFDV (SEQ ID NO;
560), GSGTFWYFDV (SEQ ID NO;
561), SGTFWYFDV (SEQ ID NO;
562), or GTFWYFDV (SEQ ID NO;
563),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
162. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569), a cysteine motif, and an amino acid sequence of any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
163. The antibody heavy claim variable region of claim 146,
wherein VI comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence that is SEQ ID NO;
498 and an amino acid sequence that is SEQ ID NO;
499,wherein V2 comprises an amino acid sequence that is SEQ ID NO;
500.
- 735, SEQ ID NO;
-
164. The antibody heavy chain variable region of any one of claim 157-163, wherein the cysteine motif is selected from the group consisting of:
- CX10CX5CX5CXCX7C (SEQ ID NO;
41), CX10CX6CX5CXCX15C (SEQ ID NO;
42), CX11CXCX5C (SEQ ID NO;
43), CX11CX5CX5CXCX7C (SEQ ID NO;
44), CX10CX6CX5CXCX13C (SEQ ID NO;
45), CX10CX5CXCX4CX8C (SEQ ID NO;
46), CX10CX6CX6CXCX7C (SEQ ID NO;
47), CX10CX4CX7CXCX8C (SEQ ID NO;
48), CX10CX4CX7CXCX7C (SEQ ID NO;
49), CX13CX8CX8C (SEQ ID NO;
50), CX10CX6CX5CXCX7C (SEQ ID NO;
51), CX10CX5CX5C (SEQ ID NO;
52), CX10CX5CX6CXCX7C (SEQ ID NO;
53), CX10CX6CX5CX7CX9C (SEQ ID NO;
54), CX9CX7CX5CXCX7C (SEQ ID NO;
55), CX10CX6CX5CXCX9C (SEQ ID NO;
56), CX10CXCX4CX5CX11C (SEQ ID NO;
57), CX7CX3CX6CX5CXCX5CX10C (SEQ ID NO;
58), CX10CXCX4CX5CXCX2CX3C (SEQ ID NO;
59), CX16CX5CXC (SEQ ID NO;
60), CX6CX4CXCX4CX5C (SEQ ID NO;
61), CX11CX4CX5CX6CX3C (SEQ ID NO;
62), CX8CX2CX6CX5C (SEQ ID NO;
63), CX10CX5CX5CXCX10C (SEQ ID NO;
64), CX10CXCX6CX4CXC (SEQ ID NO;
65), CX10CX5CX5CXCX2C (SEQ ID NO;
66), CX14CX2CX3CXCXC (SEQ ID NO;
67), CX15CX5CXC (SEQ ID NO;
68), CX4CX6CX9CX2CX11C (SEQ ID NO;
69), CX6CX4CX5CX5CX12C (SEQ ID NO;
70), CX7CX3CXCXCX4CX5CX9C (SEQ ID NO;
71), CX10CX6CX5C (SEQ ID NO;
72), CX7CX3CX5CX5CX9C (SEQ ID NO;
73), CX7CX5CXCX2C (SEQ ID NO;
74), CX10CXCX6C (SEQ ID NO;
75), CX10CX3CX3CX5CX7CXCX6C (SEQ ID NO;
76), CX10CX4CX5CX12CX2C (SEQ ID NO;
77), CX12CX4CX5CXCXCX9CX3C (SEQ ID NO;
78), CX12CX4CX5CX12CX2C (SEQ ID NO;
79), CX10CX6CX5CXCX11C (SEQ ID NO;
80), CX16CX5CXCXCX14C (SEQ ID NO;
81), CX10CX5CXCX8CX6C (SEQ ID NO;
82), CX12CX4CX5CX8CX2C (SEQ ID NO;
83), CX12CX5CX5CXCX8C (SEQ ID NO;
84), CX10CX6CX5CXCX4CXCX9C (SEQ ID NO;
85), CX11CX4CX5CX8CX2C (SEQ ID NO;
86), CX10CX6CX5CX8CX2C (SEQ ID NO;
87), CX10CX6CX5CXCX8C (SEQ ID NO;
88), CX10CX6CX5CXCX3CX8CX2C (SEQ ID NO;
89), CX10CX6CX5CX3CX8C (SEQ ID NO;
90), CX10CX6CX5CXCX2CX6CX5C (SEQ ID NO;
91), CX7CX6CX3CX3CX9C (SEQ ID NO;
92), CX9CX8CX5CX6CX5C (SEQ ID NO;
93), CX10CX2CX2CX7CXCX11CX5C (SEQ ID NO;
94), and CX10CX6CX5CXCX2CX8CX4C (SEQ ID NO;
95).
- CX10CX5CX5CXCX7C (SEQ ID NO;
-
165. The antibody heavy chain variable region of any one of claim 157-163, wherein the cysteine motif is selected from the group consisting of:
CCX3CXCX3CX2CCXCX5CX9CX5CXC (SEQ ID NO;
96), CX6CX2CX5CX4CCXCX4CX6CXC (SEQ ID NO;
97), CX7CXCX5CX4CCCX4CX6CXC (SEQ ID NO;
98), CX9CX3CXCX2CXCCCX6CX4C (SEQ ID NO;
99), CX5CX3CXCX4CX4CCX10CX2CC (SEQ ID NO;
100), CX5CXCX1CXCX3CCX3CX4CX10C (SEQ ID NO;
101), CX9CCCX3CX4CCCX5CX6C (SEQ ID NO;
102), CCX8CX5CX4CX3CX4CCXCX1C (SEQ ID NO;
103), CCX6CCX5CCCX4CX4CX12C (SEQ ID NO;
104), CX6CX2CX3CCCX4CX5CX3CX3C (SEQ ID NO;
105), CX3CX5CX6CX4CCXCX5CX4CXC (SEQ ID NO;
106), CX4CX4CCX4CX4CXCX11CX2CXC (SEQ ID NO;
107), CX5CX2CCX5CX4CCX3CCX7C (SEQ ID NO;
108), CX5CX5CX3CX2CXCCX4CX7CXC (SEQ ID NO;
109), CX3CX7CX3CX4CCXCX2CX5CX2C (SEQ ID NO;
110), CX9CX3CXCX4CCX5CCCX6C (SEQ ID NO;
111), CX9CX3CXCX2CXCCX6CX3CX3C (SEQ ID NO;
112), CX8CCXCX3CCX3CXCX3CX4C (SEQ ID NO;
113), CX9CCX4CX2CXCCXCX4CX3C (SEQ ID NO;
114), CX10CXCX3CX2CXCCX4CX5CXC (SEQ ID NO;
115), CX9CXCX3CX2CXCCX4CX5CXC (SEQ ID NO;
116), CX6CCXCX5CX4CCXCX5CX2C (SEQ ID NO;
117), CX6CCXCX3CXCCX3CX4CC (SEQ ID NO;
118), CX6CCXCX3CXCX2CXCX4CX8C (SEQ ID NO;
119), CX4CX2CCX3CXCX4CCX2CX3C (SEQ ID NO;
120), CX3CX5CX3CCCX4CX9C (SEQ ID NO;
121), CCX9CX3CXCCX3CX5C (SEQ ID NO;
122), CX9CX2CX3CX4CCX4CX5C (SEQ ID NO;
123), CX9CX7CX4CCXCX7CX3C (SEQ ID NO;
124), CX9CX3CCCX10CX2CX3C (SEQ ID NO;
125), CX3CX5CX5CX4CCX10CX6C (SEQ ID NO;
126), CX9CX5CX4CCXCX5CX4C (SEQ ID NO;
127), CX7CXCX6CX4CCCX10C (SEQ ID NO;
128), CX8CX2CX4CCX4CX3CX3C (SEQ ID NO;
129), CX7CX5CXCX4CCX7CX4C (SEQ ID NO;
130), CX11CX3CX4CCCX8CX2C (SEQ ID NO;
131), CX2CX3CX4CCX4CX5CX15C (SEQ ID NO;
132), CX9CX5CX4CCX7C (SEQ ID NO;
133), CX9CX7CX3CX2CX6C (SEQ ID NO;
134), CX9CX5CX4CCX14C (SEQ ID NO;
135), CX9CX5CX4CCX8C (SEQ ID NO;
136), CX9CX6CX4CCXC (SEQ ID NO;
137), CX5CCX7CX4CX12 (SEQ ID NO;
138), CX10CX3CX4CCX4C (SEQ ID NO;
139), CX9CX4CCX5CX4C (SEQ ID NO;
140), CX10CX3CX4CX7CXC (SEQ ID NO;
141), CX7CX7CX2CX2CX3C (SEQ ID NO;
142), CX9CX4CX4CCX6C (SEQ ID NO;
143), CX7CXCX3CXCX6C (SEQ ID NO;
144), CX7CXCX4CXCX4C (SEQ ID NO;
145), CX9CX5CX4C (SEQ ID NO;
146), CX3CX6CX8C (SEQ ID NO;
147), CX10CXCX4C (SEQ ID NO;
148), CX10CCX4C (SEQ ID NO;
149), CX15C (SEQ ID NO;
150), CX10C (SEQ ID NO;
151), and CX9C (SEQ ID NO;
152).
-
166. The antibody heavy chain variable region of any one of claim 146-165, wherein the ultralong CDR3 comprises 2 to 6 disulfide bonds.
-
167. The antibody heavy chain variable region of any one of claim 146-165, wherein the ultralong CDR3 comprises a non-antibody sequence.
-
168. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of GSKHRLRDYFLYNE (SEQ ID NO;
501), GSKHRLRDYFLYN (SEQ ID NO;
502), GSKHRLRDYFLY (SEQ ID NO;
503), GSKHRLRDYFL (SEQ ID NO;
504), GSKHRLRDYF (SEQ ID NO;
505), GSKHRLRDY (SEQ ID NO;
506), or GSKHRLRD (SEQ ID NO;
507), a non-antibody sequence, and an amino acid sequence of any one of YGPNYEEWGDYLATLDV (SEQ ID NO;
536), GPNYEEWGDYLATLDV (SEQ ID NO;
537), PNYEEWGDYLATLDV (SEQ ID NO;
538), NYEEWGDYLATLDV (SEQ ID NO;
539), YEEWGDYLATLDV (SEQ ID NO;
540), or EEWGDYLATLDV (SEQ ID NO;
541), andwherein V2 comprises an amino acid sequence of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
169. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of EAGGPDYRNGYNY (SEQ ID NO;
508), EAGGPDYRNGYN (SEQ ID NO;
509), EAGGPDYRNGY (SEQ ID NO;
510), EAGGPDYRNG (SEQ ID NO;
511), EAGGPDYRN (SEQ ID NO;
512), EAGGPDYR (SEQ ID NO;
513), EAGGPDY (SEQ ID NO;
514), or EAGGPD (SEQ ID NO;
515), a non-antibody sequence, and an amino acid sequence of any one of YDFYDGYYNYHYMDV (SEQ ID NO;
542), DFYDGYYNYHYMDV (SEQ ID NO;
543), FYDGYYNYHYMDV (SEQ ID NO;
544), YDGYYNYHYMDV (SEQ ID NO;
545), DGYYNYHYMDV (SEQ ID NO;
546), GYYNYHYMDV (SEQ ID NO;
547), or YYNYHYMDV (SEQ ID NO;
548),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
170. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of EAGGPIWHDDVKY (SEQ ID NO;
516), EAGGPIWHDDVK (SEQ ID NO;
517), EAGGPIWHDDV (SEQ ID NO;
518), EAGGPIWHDD (SEQ ID NO;
519), EAGGPIWHD (SEQ ID NO;
520), EAGGPIWH (SEQ ID NO;
521), EAGGPIW (SEQ ID NO;
522), or EAGGPI (SEQ ID NO;
523), a non-antibody sequence, and an amino acid sequence of any one of YDFNDGYYNYHYMDV (SEQ ID NO;
549), DFYDGYYNYHYMDV (SEQ ID NO;
550), FYDGYYNYHYMDV (SEQ ID NO;
551), YDGYYNYHYMDV (SEQ ID NO;
552), DGYYNYHYMDV (SEQ ID NO;
553), or GYYNYHYMDV (SEQ ID NO;
554),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
171. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of GTDYTIDDQGI (SEQ ID NO;
524), GTDYTIDDQG (SEQ ID NO;
525), GTDYTIDDQ (SEQ ID NO;
526), GTDYTIDD (SEQ ID NO;
527), GTDYTID (SEQ ID NO;
528), or GTDYTI (SEQ ID NO;
529), a non-antibody sequence, and an amino acid sequence of any one of QGIRYQGSGTFWYFDV (SEQ ID NO;
555), GIRYQGSGTFWYFDV (SEQ ID NO;
556), IRYQGSGTFWYFDV (SEQ ID NO;
557), RYQGSGTFWYFDV (SEQ ID NO;
558), YQGSGTFWYFDV (SEQ ID NO;
559), QGSGTFWYFDV (SEQ ID NO;
560), GSGTFWYFDV (SEQ ID NO;
561), SGTFWYFDV (SEQ ID NO;
562), or GTFWYFDV (SEQ ID NO;
563),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
172. The antibody heavy chain variable region of claim 146,
wherein V1 comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence of any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569), a non-antibody sequence, and an amino acid sequence of any one of YNLGYSYFYYMDG (SEQ ID NO;
564), NLGYSYFYYMDG (SEQ ID NO;
565), LGYSYFYYMDG (SEQ ID NO;
566), GYSYFYYMDG (SEQ ID NO;
567), YSYFYYMDG (SEQ ID NO;
568), or SYFYYMDG (SEQ ID NO;
569),wherein V2 comprises an amino acid sequence selected of WGQGLLVTVSS (SEQ ID NO;
500).
- 735, SEQ ID NO;
-
173. The antibody heavy claim variable region of claim 146,
wherein VI comprises an amino acid sequence selected from the group consisting of SEQ ID NO: - 735, SEQ ID NO;
737, SEQ ID NO;
739, SEQ ID NO;
741, SEQ ID NO;
743, SEQ ID NO;
745, SEQ ID NO;
747, and SEQ ID NO;
749,wherein the ultralong CDR3 comprises an amino acid sequence that is SEQ ID NO;
498 and an amino acid sequence that is SEQ ID NO;
499,wherein V2 comprises an amino acid sequence that is SEQ ID NO;
500.
- 735, SEQ ID NO;
-
174. The antibody heavy chain variable region of claim 167, wherein the non-antibody sequence is a synthetic sequence.
-
175. The antibody heavy chain variable region of claim 167, wherein the non-antibody sequence is a cytokine sequence, a lymphokine sequence, a chemokine sequence, a growth factor sequence, a hormone sequence, or a toxin sequence.
-
176. The antibody heavy chain variable region of claim 167, wherein the non-antibody sequence is an IL-8 sequence, an IL-21 sequence, an SDF-1 (alpha) sequence, a somatostatin sequence, a chlorotoxin sequence, a Pro-TxII sequence, a ziconotide sequence, an ADWX-1 sequence, an HsTx1 sequence, an OSK1 sequence, a Pi2 sequence, a Hongotoxin (HgTX) sequence, a Margatoxin sequence, an Agitoxin-2 sequence, a Pi3 sequence, a Kaliotoxin sequence, an Anuroctoxin sequence, a Charybdotoxin sequence, a Tityustoxin -K- alpha sequence, a Maurotoxin sequence, a Ceratotoxin 1 (CcoTx1) sequence, a CcoTx2 sequence, a CcoTx3 sequence, a Phrixotoxin 3 (PaurTx3) sequence, a Hanatoxin 1 sequence, a Phrixotoxin 1 sequence, a Huwentoxin-IV sequence, an α
- -conotoxin ImI sequence, an α
-conotoxin EpI sequence, an α
-conotoxin PnIA sequence, an α
-conotoxin PnIB sequence, an α
-conotoxin MII sequence, an α
-conotoxin AuIA sequence, an α
-conotoxin AuIB sequence, an α
-conotoxin AuIC sequence, a conotoxin κ
-PVIIA sequence, a charybdotoxin sequence, a neurotoxin B-IV sequence, a crotamine sequence, a ω
-GVIA (conotoxin) sequence, a κ
-hefutoxin 1 sequence, a Css4 sequence, a Bj-xtrIT sequence, a BcIV sequence, a Hm-1 sequence, a Hm-2 sequence, a GsAF-I (β
-theraphotoxin-Gr1b) sequence, a Protoxin I (ProTx-I sequence, a β
-theraphotoxin-Tp1a) sequence, a Protoxin II (ProTx II) sequence, a Huwentoxin I sequence, a μ
-Conotoxin PIIIA sequence, a Jingzhaotoxin-III (β
-TRTX-Cj1a) sequence, a GsAF-II (Kappa-theraphotoxin-Gr2c) sequence, a ShK (Stichodactyla toxin) sequence, a HsTx1 sequence, a Guangxitoxin 1E (GxTx-1E) sequence, a Maurotoxin sequence, a Charybdotoxin (ChTX) sequence, an Iberiotoxin (IbTx) sequence, a Leiurotoxin 1 (scyllatoxin) sequence, a Tamapin sequence, a Kaliotoxin-1 (KTX) sequence, a Purotoxin1 (PT-1) sequence, or a GpTx-1 sequence, a MOKA Toxin sequence, a OSK1 (P12, K16, D20) sequence, a OSK1 (K16, D20) sequence, a HmK sequence, a ShK (K16, Y26, K29) sequence, a ShK (K16) sequence, a ShK-A (K16) sequence, a ShK (K16, E30) sequence, a ShK (Q21) sequence, a ShK (L21) sequence, a ShK (F21) sequence, a ShK (121) sequence, or a ShK (A21) sequence.
- -conotoxin ImI sequence, an α
-
177. The antibody heavy chain variable region of claim 172, wherein the non-antibody sequence is any one of SEQ ID NOS:
- 475-481, 599-655, 666-698, 727-733, 808-810, and 831-835.
-
178. The antibody heavy chain variable region of claim 177, wherein the antibody heavy chain variable region comprises an amino acid sequence selected from the group consisting of SEQ ID NO:
- 770-779, 784-791, 903-922 and 925-955.
-
179. The antibody heavy chain variable region of claim 167, wherein the antibody heavy chain variable region comprises the amino acid sequence of SEQ ID NO:
- 941.
-
184. An antibody or binding fragment thereof comprising the antibody heavy chain variable region of any one of claims 146-183.
-
185. The antibody or binding fragment thereof of claim 184, wherein the heavy chain variable region further comprises a constant heavy chain 1 (CH1) region.
-
186. The antibody or binding fragment thereof claim 184, wherein the heavy chain variable region further comprises an amino acid sequence of SEQ ID NO:
- 390.
-
187. The antibody or binding fragment thereof of claim 184, wherein the antibody or binding fragment further comprises a light chain variable region.
-
188. The antibody or binding fragment thereof of claim 187, wherein the light chain variable region further comprising a constant light chain (CL) region.
-
189. An isolated polynucleotide encoding the antibody heavy chain variable region of any one of claims 146-183.
-
190. A vector comprising the polynucleotide of claim 189.
-
191. A host cell comprising the vector of claim 190.
-
194. The antibody heavy chain variable region of claim 146, wherein the ultralong CDR3 comprises a X1X2X3X4X5 motif,
wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q). -
195. The antibody heavy chain variable region of claim 194, wherein the X1X2X3X4X5 motif is TTVHQ (SEQ ID NO:
- 153), TSVHQ (SEQ ID NO;
154), SSVTQ (SEQ ID NO;
155), STVHQ (SEQ ID NO;
156), ATVRQ (SEQ ID NO;
157), TTVYQ (SEQ ID NO;
158), SPVHQ (SEQ ID NO;
159), ATVYQ (SEQ ID NO;
160), TAVYQ (SEQ ID NO;
161), TNVHQ (SEQ ID NO;
162), ATVHQ (SEQ ID NO;
163), STVYQ (SEQ ID NO;
164), TIVHQ (SEQ ID NO;
165), AIVYQ (SEQ ID NO;
166), TTVFQ (SEQ ID NO;
167), AAVFQ (SEQ ID NO;
168), GTVHQ (SEQ ID NO;
169), ASVHQ (SEQ ID NO;
170), TAVFQ (SEQ ID NO;
171), ATVFQ (SEQ ID NO;
172), AAAHQ (SEQ ID NO;
173), VWYQ (SEQ ID NO;
174), GTVFQ (SEQ ID NO;
175), TAVHQ (SEQ ID NO;
176), ITVHQ (SEQ ID NO;
177), ITAHQ (SEQ ID NO;
178), VTVHQ (SEQ ID NO;
179);
AAVHQ (SEQ ID NO;
180), GTVYQ (SEQ ID NO;
181), TTVLQ (SEQ ID NO;
182), TTTHQ (SEQ ID NO;
183), or TTDYQ (SEQ ID NO;
184).
- 153), TSVHQ (SEQ ID NO;
-
196. The antibody heavy chain variable region of claim 146, wherein the ultralong CDR3 comprises a (XaXb)z motif,
wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of: - tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), and wherein z is 1-4.
-
197. The antibody heavy chain variable region of claim 196, wherein the (XaXb)z motif is CYTYNYEF (SEQ ID NO:
- 217), HYTYTYDF (SEQ ID NO;
218), HYTYTYEW (SEQ ID NO;
219), KHRYTYEW (SEQ ID NO;
220), NYIYKYSF (SEQ ID NO;
221), PYIYTYQF (SEQ ID NO;
222), SFTYTYEW (SEQ ID NO;
223), SYIYIYQW (SEQ ID NO;
224), SYNYTYSW (SEQ ID NO;
225), SYSYSYEY (SEQ ID NO;
226), SYTYNYDF (SEQ ID NO;
227), SYTYNYEW (SEQ ID NO;
228), SYTYNYQF (SEQ ID NO;
229), SYVWTHNF (SEQ ID NO;
230), TYKYVYEW (SEQ ID NO;
231), TYTYTYEF (SEQ ID NO;
232), TYTYTYEW (SEQ ID NO;
233), VFTYTYEF (SEQ ID NO;
234), AYTYEW (SEQ ID NO;
235), DYIYTY (SEQ ID NO;
236), IHSYEF (SEQ ID NO;
237), SFTYEF (SEQ ID NO;
238), SHSYEF (SEQ ID NO;
239), THTYEF (SEQ ID NO;
240), TWTYEF (SEQ ID NO;
241), TYNYEW (SEQ ID NO;
242), TYSYEF (SEQ ID NO;
243), TYSYEH (SEQ ID NO;
244), TYTYDF (SEQ ID NO;
245), TYTYEF (SEQ ID NO;
246), TYTYEW (SEQ ID NO;
247), AYEF (SEQ ID NO;
248), AYSF (SEQ ID NO;
249), AYSY (SEQ ID NO;
250), CYSF (SEQ ID NO;
251), DYTY (SEQ ID NO;
252), KYEH (SEQ ID NO;
253), KYEW (SEQ ID NO;
254), MYEF (SEQ ID NO;
255), NWIY (SEQ ID NO;
256), NYDY (SEQ ID NO;
257), NYQW (SEQ ID NO;
258), NYSF (SEQ ID NO;
259), PYEW (SEQ ID NO;
260), RYNW (SEQ ID NO;
261), RYTY (SEQ ID NO;
262), SYEF (SEQ ID NO;
263), SYEH (SEQ ID NO;
264), SYEW (SEQ ID NO;
265), SYKW (SEQ ID NO;
266), SYTY (SEQ ID NO;
267), TYDF (SEQ ID NO;
268), TYEF (SEQ ID NO;
269), TYEW (SEQ ID NO;
270), TYQW (SEQ ID NO;
271), TYTY (SEQ ID NO;
272), or VYEW (SEQ ID NO;
273).
- 217), HYTYTYDF (SEQ ID NO;
-
198. The antibody heavy chain variable region of claim 197, wherein the (XaXb)z motif is YXYXYX.
-
199. The antibody heavy chain variable region of claim 146, wherein the ultralong CDR3 comprises a X1X2X3X4X5Xn motif,
wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), wherein X5 is glutamine (Q), and wherein n is 27-54. -
200. The antibody heavy chain variable region of claim 146, wherein the ultralong CDR3 comprises Xn(XaXb)z motif,
wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of: - tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), wherein n is 27-54, and wherein z is 1-4.
-
201. The antibody heavy chain variable region of claim 146, wherein the ultralong CDR3 comprises a X1X2X3X4X5Xn(XaXb)z motif,
wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q), wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of: - tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), wherein n is 27-54, and wherein z is 1-4.
-
213. The antibody heavy chain variable region of any one of claims 146 to 149, wherein V1 comprises an amino acid sequence of SEQ ID NO:
- 739, wherein the ultralong CDR3 comprises an amino acid sequence of SEQ ID NO;
498 and SEQ ID NO;
499, and wherein V2 comprises an amino acid sequence of SEQ ID NO;
500.
- 739, wherein the ultralong CDR3 comprises an amino acid sequence of SEQ ID NO;
-
147. ). The antibody heavy chain variable region of claim 146, wherein the ultralong CDR3 comprises an amino acid sequence of:
-
-
192. A nucleic acid library comprising a plurality of polynucleotides comprising nucleic acid sequences encoding for an antibody heavy chain variable region comprising a sequence of the formula V1-X-V2, wherein V1 comprises an amino acid sequence selected from the group consisting of:
-
(i) QVQLREWGAGLLKPSETLSLTCAVYGGSFSGYYWSWIRQPPGKGLEWIGEIN HSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
735),(ii) QVQLREWGAGLLKPSETLSLTCAVYGGSFSDKYWSWIRQPPGKGLEWIGEIN HSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
737),(iii) QVQLREWGAGLLKPSETLSLTCAVYGGSFSGYYWSWIRQPPGKGLEWIGSIN HSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
739),(iv) QVQLREWGAGLLKPSETLSLTCAVYGGSFSDKYWSWIRQPPGKGLEWIGSIN HSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
741),(v) QVQLREWGAGLLKPSETLSLTCTASGFSLSDKAVGWIRQPPGKGLEWIGEINH SGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
743),(vi) QVQLREWGAGLLKPSETLSLTCAVYGGLGSIDTGGNTGSFSGYYWSWIRQPP GKGLEWYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
745),(vii) QVQLREWGAGLLKPSETLSLTCTASGFSLSDKAVGWIRQPPGKGLEWIGSIN HSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
747), and(viii) QVQLREWGAGLLKPSETLSLTCTASGFSLSDKAVGWIRQPPGKGLEWLGSI DTGGNTGYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
749);wherein X comprises an ultralong CDR3; and wherein V2 comprises an amino acid sequence selected from the group consisting of; (i) WGHGTAVTVSS (SEQ ID NO;
570),(ii) WGKGTTVTVSS (SEQ ID NO;
571),(iii) WGKGTTVTVSS (SEQ ID NO;
572),(iv) WGRGTLVTVSS (SEQ ID NO;
573),(v) WGKGTTVTVSS (SEQ ID NO;
574), and(vi) WGQGLLVTVSS (SEQ ID NO;
500).
-
-
193. A library of antibodies comprising antibody heavy chain variable regions comprising a sequence of the formula V1-X-V2, wherein V1 comprises an amino acid sequence selected from the group consisting of:
-
(i) QVQLREWGAGLLKPSETLSLTCAVYGGSFSGYYWSWIRQPPGKGLEWIGEIN HSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
735),(ii) QVQLREWGAGLLKPSETLSLTCAVYGGSFSDKYWSWIRQPPGKGLEWIGEIN HSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
737),(iii) QVQLREWGAGLLKPSETLSLTCAVYGGSFSGYYWSWIRQPPGKGLEWIGSIN HSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
739),(iv) QVQLREWGAGLLKPSETLSLTCAVYGGSFSDKYWSWIRQPPGKGLEWIGSIN HSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
741),(v) QVQLREWGAGLLKPSETLSLTCTASGFSLSDKAVGWIRQPPGKGLEWIGEINH SGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
743),(vi) QVQLREWGAGLLKPSETLSLTCAVYGGLGSIDTGGNTGSFSGYYWSWIRQPP GKGLEWYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
745),(vii) QVQLREWGAGLLKPSETLSLTCTASGFSLSDKAVGWIRQPPGKGLEWIGSIN HSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
747), and(viii) QVQLREWGAGLLKPSETLSLTCTASGFSLSDKAVGWIRQPPGKGLEWLGSI DTGGNTGYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC (SEQ ID NO;
749);wherein X comprises an ultralong CDR3; and wherein V2 comprises an amino acid sequence selected from the group consisting of; (i) WGHGTAVTVSS (SEQ ID NO;
570),(ii) WGKGTTVTVSS (SEQ ID NO;
571),(iii) WGKGTTVTVSS (SEQ ID NO;
572),(iv) WGRGTLVTVSS (SEQ ID NO;
573),(v) WGKGTTVTVSS (SEQ ID NO;
574), and(vi) WGQGLLVTVSS (SEQ ID NO;
500).
-
-
202. An antibody heavy chain variable region comprising a sequence of the formula V1-X, wherein V1 comprises an amino acid sequence selected from the group consisting of:
-
(i) SEQ ID NO;
734 or SEQ ID NO;
735,(ii) SEQ ID NO;
736 or SEQ ID NO;
737,(iii) SEQ ID NO;
738 or SEQ ID NO;
739,(iv) SEQ ID NO;
740 or SEQ ID NO;
741,(v) SEQ ID NO;
742 or SEQ ID NO;
743,(vi) SEQ ID NO;
744 or SEQ ID NO;
745,(vii) SEQ ID NO;
746 or SEQ ID NO 747, and(viii) SEQ ID NO;
748 or SEQ ID NO;
749; andwherein X comprises an ultralong CDR3. - View Dependent Claims (203, 204, 205, 206, 207, 208, 209, 210, 211)
-
203. The antibody heavy chain variable region of claim 202, wherein the ultralong CDR3 comprises a X1X2X3X4X5 motif,
wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), and wherein X5 is glutamine (Q). -
204. The antibody heavy chain variable region of claim 203, wherein the X1X2X3X4X5 motif is TTVHQ (SEQ ID NO:
- 153), TSVHQ (SEQ ID NO;
154), SSVTQ (SEQ ID NO;
155), STVHQ (SEQ ID NO;
156), ATVRQ (SEQ ID NO;
157), TTVYQ (SEQ ID NO;
158), SPVHQ (SEQ ID NO;
159), ATVYQ (SEQ ID NO;
160), TAVYQ (SEQ ID NO;
161), TNVHQ (SEQ ID NO;
162), ATVHQ (SEQ ID NO;
163), STVYQ (SEQ ID NO;
164), TIVHQ (SEQ ID NO;
165), AIVYQ (SEQ ID NO;
166), TTVFQ (SEQ ID NO;
167), AAVFQ (SEQ ID NO;
168), GTVHQ (SEQ ID NO;
169), ASVHQ (SEQ ID NO;
170), TAVFQ (SEQ ID NO;
171), ATVFQ (SEQ ID NO;
172), AAAHQ (SEQ ID NO;
173), VWYQ (SEQ ID NO;
174), GTVFQ (SEQ ID NO;
175), TAVHQ (SEQ ID NO;
176), ITVHQ (SEQ ID NO;
177), ITAHQ (SEQ ID NO;
178), VTVHQ (SEQ ID NO;
179);
AAVHQ (SEQ ID NO;
180), GTVYQ (SEQ ID NO;
181), TTVLQ (SEQ ID NO;
182), TTTHQ (SEQ ID NO;
183), or TTDYQ (SEQ ID NO;
184).
- 153), TSVHQ (SEQ ID NO;
-
205. The antibody heavy chain variable region of claim 202, wherein the ultralong CDR3 comprises a CX1X2X3X4X5 motif.
-
206. The antibody heavy chain variable region of claim 205, wherein the CX1X2X3X4X5 motif is CTTVHQ (SEQ ID NO:
- 185), CTSVHQ (SEQ ID NO;
186), CSSVTQ (SEQ ID NO;
187), CSTVHQ (SEQ ID NO;
188), CATVRQ (SEQ ID NO;
189), CTTVYQ (SEQ ID NO;
190), CSPVHQ (SEQ ID NO;
191), CATVYQ (SEQ ID NO;
192), CTAVYQ (SEQ ID NO;
193), CTNVHQ (SEQ ID NO;
194), CATVHQ (SEQ ID NO;
195), CSTVYQ (SEQ ID NO;
196), CTIVHQ (SEQ ID NO;
197), CAIVYQ (SEQ ID NO;
198), CTTVFQ (SEQ ID NO;
199), CAAVFQ (SEQ ID NO;
200), CGTVHQ (SEQ ID NO;
201), CASVHQ (SEQ ID NO;
202), CTAVFQ (SEQ ID NO;
203), CATVFQ (SEQ ID NO;
204), CAAAHQ (SEQ ID NO;
205), CVVVYQ (SEQ ID NO;
206), CGTVFQ (SEQ ID NO;
207), CTAVHQ (SEQ ID NO;
208), CITVHQ (SEQ ID NO;
209), CITAHQ (SEQ ID NO;
210), CVTVHQ (SEQ ID NO;
211);
CAAVHQ (SEQ ID NO;
212), CGTVYQ (SEQ ID NO;
213), CTTVLQ (SEQ ID NO;
214), CTTTHQ (SEQ ID NO;
215), or CTTDYQ (SEQ ID NO;
216).
- 185), CTSVHQ (SEQ ID NO;
-
207. The antibody heavy chain variable region of claim 202, wherein the ultralong CDR3 comprises a (XaXb)z motif,
wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of: - tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), and wherein z is 1-4.
-
208. The antibody heavy chain variable region of claim 207, wherein the (XaXb)z motif is CYTYNYEF (SEQ ID NO:
- 217), HYTYTYDF (SEQ ID NO;
218), HYTYTYEW (SEQ ID NO;
219), KHRYTYEW (SEQ ID NO;
220), NYIYKYSF (SEQ ID NO;
221), PYIYTYQF (SEQ ID NO;
222), SFTYTYEW (SEQ ID NO;
223), SYIYIYQW (SEQ ID NO;
224), SYNYTYSW (SEQ ID NO;
225), SYSYSYEY (SEQ ID NO;
226), SYTYNYDF (SEQ ID NO;
227), SYTYNYEW (SEQ ID NO;
228), SYTYNYQF (SEQ ID NO;
229), SYVWTHNF (SEQ ID NO;
230), TYKYVYEW (SEQ ID NO;
231), TYTYTYEF (SEQ ID NO;
232), TYTYTYEW (SEQ ID NO;
233), VFTYTYEF (SEQ ID NO;
234), AYTYEW (SEQ ID NO;
235), DYIYTY (SEQ ID NO;
236), IHSYEF (SEQ ID NO;
237), SFTYEF (SEQ ID NO;
238), SHSYEF (SEQ ID NO;
239), THTYEF (SEQ ID NO;
240), TWTYEF (SEQ ID NO;
241), TYNYEW (SEQ ID NO;
242), TYSYEF (SEQ ID NO;
243), TYSYEH (SEQ ID NO;
244), TYTYDF (SEQ ID NO;
245), TYTYEF (SEQ ID NO;
246), TYTYEW (SEQ ID NO;
247), AYEF (SEQ ID NO;
248), AYSF (SEQ ID NO;
249), AYSY (SEQ ID NO;
250), CYSF (SEQ ID NO;
251), DYTY (SEQ ID NO;
252), KYEH (SEQ ID NO;
253), KYEW (SEQ ID NO;
254), MYEF (SEQ ID NO;
255), NWIY (SEQ ID NO;
256), NYDY (SEQ ID NO;
257), NYQW (SEQ ID NO;
258), NYSF (SEQ ID NO;
259), PYEW (SEQ ID NO;
260), RYNW (SEQ ID NO;
261), RYTY (SEQ ID NO;
262), SYEF (SEQ ID NO;
263), SYEH (SEQ ID NO;
264), SYEW (SEQ ID NO;
265), SYKW (SEQ ID NO;
266), SYTY (SEQ ID NO;
267), TYDF (SEQ ID NO;
268), TYEF (SEQ ID NO;
269), TYEW (SEQ ID NO;
270), TYQW (SEQ ID NO;
271), TYTY (SEQ ID NO;
272), or VYEW (SEQ ID NO;
273).
- 217), HYTYTYDF (SEQ ID NO;
-
209. The antibody heavy chain variable region of claim 207, wherein the (XaXb)z motif is YXYXYX.
-
210. The antibody heavy chain variable region of claim 202, wherein the ultralong CDR3 comprises a X1X2X3X4X5Xn motif,
wherein X1 is threonine (T), glycine (G), alanine (A), serine (S), or valine (V), wherein X2 is serine (S), threonine (T), proline (P), isoleucine (I), alanine (A), valine (V), or asparagine (N), wherein X3 is valine (V), alanine (A), threonine (T), or aspartic acid (D), wherein X4 is histidine (H), threonine (T), arginine (R), tyrosine (Y), phenylalanine (F), or leucine (L), wherein X5 is glutamine (Q), and wherein n is 27-54. -
211. The antibody heavy chain variable region of claim 202, wherein the ultralong CDR3 comprises Xn(XaXb)z motif,
wherein Xa is any amino acid residue, Xb is an aromatic amino acid selected from the group consisting of: - tyrosine (Y), phenylalanine (F), tryptophan (W), and histidine (H), wherein n is 27-54, and wherein z is 1-4.
-
203. The antibody heavy chain variable region of claim 202, wherein the ultralong CDR3 comprises a X1X2X3X4X5 motif,
-
Specification
- Resources
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Current AssigneeTaurus Biosciences LLC (Ligand Pharmaceuticals, Inc.)
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Original AssigneeFabrus, LLC. (Eloxx Pharmaceuticals, Inc.)
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InventorsBazirgan, Omar, de los Rios, Miguel
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Granted Patent
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Time in Patent OfficeDays
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Field of Search
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US Class Current
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CPC Class CodesC07K 14/43504 from invertebratesC07K 14/43522 from scorpionsC07K 14/522 Alpha-chemokines, e.g. NAP-...C07K 14/54 Interleukins [IL]C07K 14/5421 IL-8C07K 14/655 SomatostatinsC07K 16/00 Immunoglobulins [IGs], e.g....C07K 16/005 constructed by phage librariesC07K 16/1081 Togaviridae, e.g. flaviviru...C07K 16/464 Igs containing CDR-residues...C07K 2317/20 characterized by taxonomic ...C07K 2317/24 containing regions, domains...C07K 2317/565 Complementarity determining...C07K 2317/75 Agonist effect on antigenC07K 2317/76 Antagonist effect on antige...C07K 2317/92 Affinity (KD), association ...C07K 2318/10 Immunoglobulin or domain(s)...C07K 2319/00 Fusion polypeptideC40B 40/10 Libraries containing peptid...