BISPECIFIC ANTIBODIES WITH TETRAVALENCY FOR A COSTIMULATORY TNF RECEPTOR

• US 20170247467A1
• Filed: 09/29/2016
• Published: 08/31/2017
• Est. Priority Date: 10/07/2015
• Status: Abandoned Application

• Current Assignee: Hoffmann-La Roche Incorporated (Roche Holding AG)
• Original Assignee: Hoffmann-La Roche Incorporated (Roche Holding AG)
• Inventors: AMANN, MARIA, BRUENKER, PETER, CLAUS, CHRISTINA, FERRARA KOLLER, CLAUDIA, GRAU-RICHARDS, SANDRA, HOSSE, RALF, KLEIN, CHRISTIAN, LEVITSKI, VIKTOR, MOSER, SAMUEL, UMANA, PABLO
• Application Number:
  US15/280,386
• Publication Number:
  US 20170247467A1
• Time in Patent Office: Days
• CPC Class Codes: A61P 31/00 Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
• CPC Class Codes: A61P 35/00 Antineoplastic agents
• CPC Class Codes: A61P 37/04 Immunostimulants
• CPC Class Codes: C07K 16/2875 against the NGF/TNF superfamily, e.g. CD70, CD95L, CD153, CD154 against NGF C07K16/22, against TNF C07K16/241
• CPC Class Codes: C07K 16/2878 against the NGF-receptor/TNF-receptor superfamily, e.g. CD27, CD30, CD40, CD95
• CPC Class Codes: C07K 16/30 from tumour cells
• CPC Class Codes: C07K 16/40 against enzymes
• CPC Class Codes: C07K 2317/21 from primates, e.g. man
• CPC Class Codes: C07K 2317/31 multispecific
• CPC Class Codes: C07K 2317/33 Crossreactivity, e.g. for species or epitope, or lack of said crossreactivity
• CPC Class Codes: C07K 2317/35 Valency
• CPC Class Codes: C07K 2317/41 Glycosylation, sialylation, or fucosylation
• CPC Class Codes: C07K 2317/52 Constant or Fc region; Isotype
• CPC Class Codes: C07K 2317/522 CH1 domain
• CPC Class Codes: C07K 2317/524 CH2 domain
• CPC Class Codes: C07K 2317/526 CH3 domain
• CPC Class Codes: C07K 2317/55 Fab or Fab'
• CPC Class Codes: C07K 2317/56 variable (Fv) region, i.e. VH and/or VL
• CPC Class Codes: C07K 2317/565 Complementarity determining region [CDR]
• CPC Class Codes: C07K 2317/66 comprising a swap of domains, e.g. CH3-CH2, VH-CL or VL-CH1
• CPC Class Codes: C07K 2317/71 : Decreased effector function due to an Fc-modification
• CPC Class Codes: C07K 2317/73 : Inducing cell death, e.g. apoptosis, necrosis or inhibition of cell proliferation
• CPC Class Codes: C07K 2317/74 : Inducing cell proliferation
• CPC Class Codes: C07K 2317/75 : Agonist effect on antigen
• CPC Class Codes: C07K 2317/76 : Antagonist effect on antigen, e.g. neutralization or inhibition of binding
• CPC Class Codes: C07K 2317/92 : Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value
• CPC Class Codes: C07K 2317/94 : Stability, e.g. half-life, pH, temperature or enzyme-resistance
• CPC Class Codes: C07K 2319/30 : Non-immunoglobulin-derived peptide or protein having an immunoglobulin constant or Fc region, or a fragment thereof, attached thereto
• CPC Class Codes: C07K 2319/32 : fusions with soluble part of a cell surface receptor, "decoy receptors"

Abstract

The invention relates to novel bispecific antigen binding molecules, comprising (a) four moieties capable of specific binding to a costimulatory TNF receptor family member, (b) at least one moiety capable of specific binding to a target cell antigen, and (c) a Fc domain composed of a first and a second subunit capable of stable association, and to methods of producing these molecules and to methods of using the same.

Claims

1. A bispecific antigen binding molecule, comprising

(a) four moities capable of specific binding to a costimulatory TNF receptor family member,

(b) at least one moiety capable of specific binding to a target cell antigen, and

(c) a Fc domain composed of a first and a second subunit capable of stable association.

2. The bispecific antigen binding molecule of claim 1, wherein each two of the four moieties capable of specific binding to a costimulatory TNF receptor family member are fused to each other, optionally via a peptide linker.

3. The bispecific antigen binding molecule of claim 1, wherein the costimulatory TNF receptor family member is selected from the group consisting of OX40, 4-1BB and GITR.

4. The bispecific antigen binding molecule of claim 1, wherein the costimulatory TNF receptor family member is OX40.

5. The bispecific antigen binding molecule of claim 4, wherein the moiety capable of specific binding to a costimulatory TNF receptor family member binds to a polypeptide comprising the amino acid sequence of SEQ ID NO:

1.

6. The bispecific antigen binding molecule of claim 4, comprising four moities capable of specific binding to OX40, wherein each of said moities comprises a VH domain comprising

(i) a CDR-H1 comprising the amino acid sequence selected from the group consisting of SEQ ID NO:

2 and SEQ ID NO;

3,

(ii) a CDR-H2 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

4 and SEQ ID NO;

5, and

(iii) a CDR-H3 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

6, SEQ ID NO;

7, SEQ ID NO;

8, SEQ ID NO;

9, SEQ ID NO;

10, SEQ ID NO;

11 and SEQ ID NO;

12,

and a VL domain comprising

(iv) a CDR-L1 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

13, SEQ ID NO;

14 and SEQ ID NO;

15,

(v) a CDR-L2 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

16, SEQ ID NO;

17 and SEQ ID NO;

18, and

(vi) a CDR-L3 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

19, SEQ ID NO;

20, SEQ ID NO;

21, SEQ ID NO;

22, SEQ ID NO;

23 and SEQ ID NO;

24.

7. The bispecific antigen binding molecule of claim 4, wherein each of the moieties capable of specific binding to OX40 comprises a heavy chain variable region VH comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to an amino acid sequence selected from the group consisting of SEQ ID NO:

25, SEQ ID NO;

27, SEQ ID NO;

29, SEQ ID NO;

31, SEQ ID NO;

33, SEQ ID NO;

35 and SEQ ID NO;

37 and a light chain variable region VL comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to an amino acid sequence selected from the group consisting of SEQ ID NO;

26, SEQ ID NO;

28, SEQ ID NO;

30, SEQ ID NO;

30, SEQ ID NO;

32, SEQ ID NO;

34, SEQ ID NO;

36 and SEQ ID NO;

38.

8. The bispecific antigen binding molecule of claim 4, wherein each of the moieties capable of specific binding to OX40 comprises

(i) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO:

25 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

26,

(ii) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO;

27 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

28,

(iii) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO;

29 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

30,

(iv) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO;

31 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

32,

(v) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO;

33 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

34,

(vi) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO;

35 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

36, or

(vii) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO;

37 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

38.

9. The bispecific antigen binding molecule of claim 4, wherein the target cell antigen is selected from the group consisting of Fibroblast Activation Protein (FAP), Melanoma-associated Chondroitin Sulfate Proteoglycan (MCSP), Epidermal Growth Factor Receptor (EGFR), Carcinoembryonic Antigen (CEA), CD19, CD20 and CD33.

12. The bispecific antigen binding molecule of claim 4, wherein

(i) each of the moieties capable of specific binding to OX40 comprises a heavy chain variable region VH comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to an amino acid sequence selected from the group consisting of SEQ ID NO:

25, SEQ ID NO;

27, SEQ ID NO;

29, SEQ ID NO;

31, SEQ ID NO;

33, SEQ ID NO;

35 or SEQ ID NO;

37 and a light chain variable region comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to an amino acid sequence selected from the group consisting of SEQ ID NO;

26, SEQ ID NO;

28, SEQ ID NO;

30, SEQ ID NO;

32, SEQ ID NO;

34, SEQ ID NO;

36 or SEQ ID NO;

38 and

(ii) the moiety capable of specific binding to FAP comprises a heavy chain variable region VH comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence of SEQ ID NO;

51 or SEQ ID NO;

53 and a light chain variable region comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence of SEQ ID NO;

52 or SEQ ID NO;

54.

13. The bispecific antigen binding molecule of claim 1, wherein the costimulatory TNF receptor family member is 4-1BB.

14. The bispecific antigen binding molecule of claim 1, wherein the moiety capable of specific binding to a costimulatory TNF receptor family member binds to a polypeptide comprising the amino acid sequence of SEQ ID NO:

239.

18. The bispecific antigen binding molecule of claim 13, wherein

(i) each of the moieties capable of specific binding to 4-1BB comprises a heavy chain variable region VH comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence selected from the group consisting of SEQ ID NO:

267, SEQ ID NO;

269, SEQ ID NO;

271, SEQ ID NO;

273, and SEQ ID NO;

275 and a light chain variable region comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to an amino acid sequence selected from the group consisting of SEQ ID NO;

268, SEQ ID NO;

270, SEQ ID NO;

272, SEQ ID NO;

274, and SEQ ID NO;

276, and

(ii) the moiety capable of specific binding to FAP comprises a heavy chain variable region VH comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence of SEQ ID NO;

51 or SEQ ID NO;

53 and a light chain variable region comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence of SEQ ID NO;

52 or SEQ ID NO;

54.

19. The bispecific antigen binding molecule claim 1, wherein the costimulatory TNF receptor family member is GITR.

20. The bispecific antigen binding molecule of claim 19, wherein the moiety capable of specific binding to a costimulatory TNF receptor family member binds to a polypeptide comprising the amino acid sequence of SEQ ID NO:

357.

21. The bispecific antigen binding molecule of claim 19, comprising four moities capable of specific binding to GITR, wherein each of said moities comprises a VH domain comprising a CDR-H1 comprising the amino acid sequence of SEQ ID NO:

371, a CDR-H2 comprising the amino acid sequence of SEQ ID NO;

372 and a CDR-H3 comprising the amino acid sequence of SEQ ID NO;

373, and a VL domain comprising a CDR-L1 comprising the amino acid sequence of SEQ ID NO;

374, a CDR-L2 comprising the amino acid sequence of SEQ ID NO;

375 and a CDR-L3 comprising the amino acid sequence of SEQ ID NO;

376.

22. The bispecific antigen binding molecule of claim 19, wherein each of the moieties capable of specific binding to GITR comprises a heavy chain variable region VH comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to an amino acid sequence of SEQ ID NO:

383, and a light chain variable region VL comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to an amino acid sequence of SEQ ID NO;

384.

23. The bispecific antigen binding molecule of claim 19, wherein each of the moities capable of specific binding to GITR comprises a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO:

383 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

384.

24. The bispecific antigen binding molecule of claim 19, wherein

(i) each of the moieties capable of specific binding to GITR comprises a heavy chain variable region VH comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence of SEQ ID NO:

383, and a light chain variable region comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to an amino acid sequence of SEQ ID NO;

384, and

(ii) the moiety capable of specific binding to FAP comprises a heavy chain variable region VH comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence of SEQ ID NO;

51 or SEQ ID NO;

53 and a light chain variable region comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence of SEQ ID NO;

52 or SEQ ID NO;

54.

25. The bispecific antigen binding molecule of claim 1, wherein the four moieties capable of specific binding to a costimulatory TNF receptor family member are Fab fragments and each two thereof are fused to each other, optionally via a peptide linker.

26. The bispecific antigen binding molecule of claim 1, wherein a first Fab fragment capable of specific binding to a costimulatory TNF receptor family member is fused at the C-terminus of the CH1 domain to the VH domain of a second Fab fragment capable of specific binding to a costimulatory TNF receptor family member and a third Fab fragment capable of specific binding to a costimulatory TNF receptor family member is fused at the C-terminus of the CH1 domain to the VH domain of a fourth Fab fragment capable of specific binding to a costimulatory TNF receptor family member, optionally via a peptide linker.

27. The bispecific antigen binding molecule of claim 1, wherein in the Fab fragments capable of specific binding to a costimulatory TNF receptor family member in the constant domain CL the amino acid at position 124 is substituted independently by lysine (K), arginine (R) or histidine (H) (numbering according to Kabat EU Index), and in the constant domain CH1 the amino acids at positions 147 and 213 are substituted independently by glutamic acid (E) or aspartic acid (D) (numbering according to Kabat EU index).

28. The bispecific antigen binding molecule of claim 1, wherein the bispecific antigen binding molecule is tetravalent for the costimulatory TNF receptor family member and monovalent for the target cell antigen.

29. The bispecific antigen binding molecule of claim 1, wherein the moiety capable of specific binding to a target cell antigen comprises a VH and VL domain and wherein the VH domain is connected via a peptide linker to the C-terminus of the first subunit of the Fc domain and the VL domain is connected via a peptide linker to the C-terminus of the second subunit of the Fc domain.

30. The bispecific antigen binding molecule of claim 1, wherein the bispecific antigen binding molecule is tetravalent for the costimulatory TNF receptor family member and bivalent for the target cell antigen.

31. The bispecific antigen binding molecule of claim 1, wherein the two moieties capable of specific binding to a target cell antigen are Fab fragments or crossover Fab fragments.

32. The bispecific antigen binding molecule of claim 1, wherein each of the Fab fragments or crossover Fab fragments capable of specific binding to a target cell antigen is fused at the N-terminus of the VH or VL domain via a peptide linker to the C-terminus of one of the subunits of the Fc domain.

33. The bispecific antigen binding molecule of claim 1, wherein the two moieties capable of specific binding to a target cell antigen are VH-VL crossover Fab fragments and are each fused at the N-terminus of the VL domain via a peptide linker to the C-terminus of one of the subunits of the Fc domain.

34. The bispecific antigen binding molecule of claim 1, wherein the Fc domain is of human IgG1 subclass with the amino acid mutations L234A, L235A and P329G (numbering according to Kabat EU index).

35. A polynucleotide encoding the bispecific antigen binding molecule of claim 1.

36. A pharmaceutical composition comprising a bispecific antigen binding molecule of claim 1, and at least one pharmaceutically acceptable excipient.

41. A method of inhibiting the growth of tumor cells in an individual comprising administering to the individual an effective amount of the bispecific antigen binding molecule of claim 1, to inhibit the growth of the tumor cells.

10. The bispecific antigen binding molecule of claim 10, wherein the target cell antigen is Fibroblast Activation Protein (FAP).

11. The bispecific antigen binding molecule of claim 10, wherein the moiety capable of specific binding to FAP comprises a VH domain comprising

(i) a CDR-H1 comprising the amino acid sequence selected from the group consisting of SEQ ID NO:

39 and SEQ ID NO;

40,

(ii) a CDR-H2 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

41 and SEQ ID NO;

42, and

(iii) a CDR-H3 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

43 and SEQ ID NO;

44,

and a VL domain comprising

(iv) a CDR-L1 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

45 and SEQ ID NO;

46,

(v) a CDR-L2 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

47 and SEQ ID NO;

48, and

(vi) a CDR-L3 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

49 and SEQ ID NO;

50.

15. The bispecific antigen binding molecule of 13, comprising four moities capable of specific binding to 4-1BB, wherein each of said moities comprises a VH domain comprising

(i) a CDR-H1 comprising the amino acid sequence selected from the group consisting of SEQ ID NO:

249 and SEQ ID NO;

250,

(ii) a CDR-H2 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

251 and SEQ ID NO;

252, and

(iii) a CDR-H3 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

253, SEQ ID NO;

254, SEQ ID NO;

255, SEQ ID NO;

256, and SEQ ID NO;

257,

and a VL domain comprising

(iv) a CDR-L1 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

258 and SEQ ID NO;

259,

(v) a CDR-L2 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

260 and SEQ ID NO;

261, and

(vi) a CDR-L3 comprising the amino acid sequence selected from the group consisting of SEQ ID NO;

262, SEQ ID NO;

263, SEQ ID NO;

264, SEQ ID NO;

265, and SEQ ID NO;

266.

16. The bispecific antigen binding molecule of 13, wherein each of the moieties capable of specific binding to 4-1BB comprises a heavy chain variable region VH comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to an amino acid sequence selected from the group consisting of SEQ ID NO:

267, SEQ ID NO;

269, SEQ ID NO;

271, SEQ ID NO;

273, and SEQ ID NO;

275, and a light chain variable region VL comprising an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to an amino acid sequence selected from the group consisting of SEQ ID NO;

268, SEQ ID NO;

270, SEQ ID NO;

272, SEQ ID NO;

274, and SEQ ID NO;

276.

17. The bispecific antigen binding molecule 13, wherein each of the moities capable of specific binding to 4-1BB comprises

(i) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO:

267 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

268,

(ii) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO;

269 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

270,

(iii) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO;

271 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

272,

(iv) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO;

273 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

274, or

(v) a heavy chain variable region VH comprising an amino acid sequence of SEQ ID NO;

275 and a light chain variable region VL comprising an amino acid sequence of SEQ ID NO;

276.

37. (canceled)

38. (canceled)

39. (canceled)

40. (canceled)