CELLULAR LIBRARIES OF PEPTIDE SEQUENCES (CLiPS) AND METHODS OF USING THE SAME
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Abstract
The present invention provides compositions including peptide display scaffolds that present at least one candidate peptide and at least one detectable moiety in at least one of the N-terminal and C-terminal candidate peptide presenting domains that when expressed in a cell are accessible at a surface of the cell outermembrane. In addition, the present invention also provides kits and methods for screening a library of cells presenting the candidate peptides in peptide display scaffolds to identify a ligand for an enzyme.
3 Citations
63 Claims
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1-46. -46. (canceled)
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47. A method of identifying a substrate or ligand for an enzyme, comprising:
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contacting a plurality of cells, wherein each cell expresses a peptide display scaffold comprising a fusion protein comprising the formula;
[D1-C1]-TM-[D2],wherein TM is a circularly permuted transmembrane protein; wherein C1 comprises a candidate peptide ligand or substrate; wherein D1 is a first detectable moiety and is a heterologous peptide or polypeptide; wherein D2 is a second detectable moiety and is a heterologous peptide or polypeptide; wherein D1 and D2 are not the same; and wherein D1, D2, and C1 are exposed at an extracellular surface of the cell outer membrane; and detecting the presence or absence of a D1 signal and a D2 signal for at least one cell, wherein said detecting indicates whether C1 comprises a substrate or ligand for the enzyme. - View Dependent Claims (48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59)
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60. A method of identifying an allosteric regulator for an enzyme, comprising:
contacting a plurality of cells, wherein each cell expresses a peptide display scaffold comprising a fusion protein comprising the formula;
[D1-C1]-TM-[C2-D2],wherein TM is a circularly permuted transmembrane protein; wherein C1 is a known substrate for the enzyme, wherein C2 comprises a candidate allosteric regulator; wherein D1 is a first detectable moiety and is a heterologous peptide or polypeptide; wherein D2 is a second detectable moiety and is a heterologous peptide or polypeptide; wherein D1 and D2 are not the same; and wherein D1, D2, C1, and C2, are exposed at an extracellular surface of the cell outer membrane; and detecting the presence or absence of a D1 signal and a D2 signal for at least one cell, wherein said detecting indicates whether C1 comprises an allosteric regulator for the enzyme. - View Dependent Claims (61)
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62. A method of identifying an inhibitor for an enzyme, comprising:
contacting a plurality of cells, wherein each cell expresses a peptide display scaffold comprising a fusion protein comprising the formula;
[D1-C1]-TM-[C2-D2],wherein TM is a circularly permuted transmembrane protein; wherein C1 is a known substrate for the enzyme, wherein C2 comprises a candidate inhibitor; wherein D1 is a first detectable moiety and is a heterologous peptide or polypeptide; wherein D2 is a second detectable moiety and is a heterologous peptide or polypeptide; wherein D1 and D2 are not the same; and wherein D1, D2, C1, and C2, are exposed at an extracellular surface of the cell outer membrane; and detecting the presence or absence of a D1 signal and a D2 signal for at least one cell, wherein said detecting indicates whether C1 comprises an inhibitor for the enzyme. - View Dependent Claims (63)
Specification