Process for DNA sequencing using oligonucleotide bank

• US 5,114,839 A
• Filed: 01/11/1990
• Issued: 05/19/1992
• Est. Priority Date: 05/24/1988
• Status: Expired due to Fees

• Current Assignee: Gesellschaft Fur Biotechnologische Forschung mbH
• Original Assignee: Gesellschaft Fur Biotechnologische Forschung mbH
• Inventors: Blocker, Helmut
• Primary Examiner(s): Griffin, Ronald W.
• Assistant Examiner(s): Kunz, Gary L.
• Application Number:
  US07/457,815
• Time in Patent Office: 859 Days
• Field of Search: 536/27, 435/6, 935/77
• US Class Current: 435/6.11
• CPC Class Codes: C12Q 1/686 Polymerase chain reaction [PCR]
• CPC Class Codes: C12Q 1/6874 involving nucleic acid arrays, e.g. sequencing by hybridisation
• CPC Class Codes: C12Q 2537/143 Multiplexing, i.e. use of multiple primers or probes in a single reaction, usually for simultaneously analyse of multiple analysis
• CPC Class Codes: Y10T 436/143333 Saccharide [e.g., DNA, etc.]

Abstract

A process for DNA sequencing by the multi-primer method involving the use of oligonucleotide banks of hexamers, heptamers, octomers, or nonamers for the creation of the primer through the ligation of two or more oligomers following hybridization onto the primer site.

Claims

1. Process for DNA sequencing by the multi-primer method which comprises;

(a) selecting in the DNA to be sequenced a single-stranded primer-attachment site of known sequence;

(b) hybridizing immediately adjacent to each other at the primer-attachment site two oligonucleotides selected from the group consisting of hexameric, heptameric, octameric and nonameric oligonucleotides obtained from a bank comprising all possible 4⁶, 4⁷, 4⁸ an d4⁹ different oligonucleotides;

(c) hybridizing simultaneously with step (b) or after step (b) a further hexameric, heptameric, octameric or nonameric oligonucleotide immediately adjacent to one of the other two oligonucleotides at the primer-attachment site,

(d) ligating the oligonucleotides to form a primer, and

(e) heat treating to remove non-ligated oligonucleotides.

2. Process according to claim 1, characterized in that at the primer-attachment site two oligonucleotides are hybridized and ligated with one another to form a pre-primer and only then is a third oligomer hybridized and ligated to the pre-primer at the primer-attachment site.

3. Process according to claim 1, characterized in that there are used oligonucleotides that are phosphorylated at their 5'"'"' end when that end is to be ligated with an adjacent oligonucleotide with the aid of T4-DNA ligase.