Process for the preparation of oligonucleotides in solution

• US 5,198,540 A
• Filed: 06/19/1989
• Issued: 03/30/1993
• Est. Priority Date: 10/28/1982
• Status: Expired due to Fees

• Current Assignee: Perseptive Biosystems Incorporated (Ecovyst, Inc.)
• Original Assignee: Millipore Corporation
• Inventors: Koster, Hubert
• Primary Examiner(s): Brown, Johnnie R.
• Assistant Examiner(s): Crane, L. Eric
• Application Number:
  US07/368,965
• Time in Patent Office: 1,380 Days
• Field of Search: 536/27-29
• US Class Current: 536/25.3
• CPC Class Codes: C07H 21/00 Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids

Abstract

Process for the preparation of oligonucleotides by successive linking of individual or several nucleoside and/or nucleotide units in a homogeneous phase system using a bi-, tri- or tetra-functional carrier molecule of the general formula Sp(X)_n, wherein X is a reactive group which is compatible from the point of view of nucleotide chemistry and n is an integer from 2 to 4, the sequence SP(X-N¹ -N² . . . N^m)_n being built up stepwise on the carrier molecule and the oligonucleotide of the formula N¹ -N² . . . N^m subsequently being released.

Claims

1. A process of preparing oligonucleotides in a liquid phase reaction mixture, comprising the steps of:

a) reacting a bifunctional carrier molecule, which is soluble in, and chromatographically separable from, the reaction mixture, the carrier molecule having the formula;

##STR2## wherein;

(i) n is an integer from 2 to 10; and

(ii) X is a trityl halide;

with at least an equimolar amount of a first nucleoside, nucleotide, or oligonucleotide, N¹ ;

b) separating and purifying the compound formed by the reaction in step (a) by chromatography, said compound having the formula;

##STR3## c) repeating steps (a) and (b) to add additional nucleotides N² . . . N^m to form an oligonucleotide having the formula;

space="preserve" listing-type="equation">N.sup.m . . . N.sup.1 --X--O--C(CH.sub.2).sub.n C--O--X--N.sup.1 . . . N.sup.m

wherein m is an integer from 3 to 50 and wherein the oligonucleotide is soluble in and chromatographically separable from the reaction mixture; and

d) releasing the oligonucleotide from the carrier molecule by contacting said oligonucleotide with acetic acid, thereby obtaining an oligonucleotide having the formula;

space="preserve" listing-type="equation">N.sup.1, N.sup.2 . . . N.sup.m.

2. A process of claim 1, wherein n is 6.

3. A process of claim 2, wherein X is dimethoxytrityl chloride.

4. A process of preparing oligonucleotides in a liquid phase reaction mixture comprising the steps of:

a) reacting a carrier molecule having the formula;

##STR4## wherein R is --OCH₃, with at least an equimolar amount of a nucleoside or nucleotide;

b) separating and purifying the compound formed in (a) by gel filtration chromatography

c) repeating steps (a) and (b) to form an oligonucleotide which is chromatographably separable from the reaction mixture; and

d) releasing the oligonucleotide from the carrier molecule by contacting said oligonucleotide with acetic acid.

5. A process of claim 4, wherein the nucleoside, nucleotide or oligonucleotide is protected.

6. A process of claim 4, wherein the oligonucleotide contains from about 3 to about 50 nucleotide bases.

7. A process of claim 4, wherein the carrier molecule is soluble in the liquid phase reaction mixture.

8. A process of claim 4 further comprising the step of releasing the oligonucleotides from the carrier molecule by contacting said oligonucleotides with acetic acid.