Polyamine conjugated oligonucleotides

• US 5,218,105 A
• Filed: 03/03/1992
• Issued: 06/08/1993
• Est. Priority Date: 07/27/1990
• Status: Expired due to Term

• Current Assignee: ISIS Pharmaceuticals Incorporated
• Original Assignee: ISIS Pharmaceuticals Incorporated
• Inventors: Guinosso, Charles J., Cook, Philip D.
• Primary Examiner(s): Rollins, John W.
• Application Number:
  US07/844,845
• Time in Patent Office: 462 Days
• Field of Search: 536/27
• US Class Current: 536/25.31
• CPC Class Codes: A61K 47/549 Sugars, nucleosides, nucleotides or nucleic acids
• CPC Class Codes: A61K 47/59 obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes
• CPC Class Codes: C07D 405/04 directly linked by a ring-member-to-ring-member bond
• CPC Class Codes: C07D 405/14 containing three or more hetero rings
• CPC Class Codes: C07F 7/1804 Compounds having Si-O-C linkages Si-O-acyl linkages C07F7/1896
• CPC Class Codes: C07H 19/04 Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
• CPC Class Codes: C07H 19/06 Pyrimidine radicals
• CPC Class Codes: C07H 19/10 with the saccharide radical esterified by phosphoric or polyphosphoric acids
• CPC Class Codes: C07H 19/16 Purine radicals
• CPC Class Codes: C07H 21/00 Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids

Abstract

Oligonucleotide analogs are provided having improved cellular uptake and improved nuclease resistance. Modification of oligonucleotides through the attachment of nitrogenous moieties, especially polyamines, hydrazines and the like to nucleosidic portions of the analogs is disclosed. Oligonucleotides targeted at the tat region of HIV comprise certain preferred embodiments.

Claims

1. A method for synthesizing a phosphorothioate oligonucleotide wherein the 5'"'"' terminal nucleotide is modified by direct attachment of a polyamine to the oligonucleotide comprising:

synthesizing a phosphorothioate oligonucleotide having a 3'"'"' and a 5'"'"' end and having a selected sequence of from about 5 to about 50 nucleic acid bases;

oxidizing the 5'"'"' hydroxyl moiety of a nucleoside to form a 5'"'"'-aldehydic nucleoside;

protecting the aldehydic species of said 5'"'"'-aldehydic nucleoside;

phosphitylating said protected 5'"'"'-aldehydic nucleoside to form a 3'"'"' phosphitylated protected 5'"'"'-aldehydic nucleoside;

adding said phosphitylated nucleoside to the 5'"'"' end of said phosphorothioate oligonucleotide to produce a modified phosphorothioate oligonucleotide;

deprotecting the 5'"'"' end of said modified phosphorothioate oligonucleotide;

treating said modified oligonucleotide with a polyamine to form a Schiff'"'"'s base adduct appended to the deprotected 5'"'"' end of said modified oligonucleotide; and

reducing said Schiff'"'"'s base adduct to form a polyamine species attached via a nitrogen-carbon covalent bond to the 5'"'"' end of said modified oligonucleotide.

2. The method of claim 1 wherein said nucleoside is thymidine.

3. The method of claim 1 wherein said polyamine is a primary amine, a hydrazine, a semicarbazide, or a thiosemicarbazide.

4. The method of claim 1 wherein said polyamine has the structure H₂ N(CH₂)_n NH(CH₂)_n NH(CH)_n NH-- wherein n is an integer between 2 and 6.

5. The method of claim 4 wherein n is 4.

6. The method of claim 1 wherein said oxidizing step is performed using 3'"'"' acetylated nucleoside.

7. A method for synthesizing a phosphorothioate oligonucleotide wherein the 5'"'"' terminal nucleotide is modified by direct attachment of a polyamine to the oligonucleotide comprising:

oxidizing the 5'"'"' hydroxyl moiety of a nucleoside to form a 5'"'"'-aldehyde nucleoside;

protecting the aldehydic species of said 5'"'"'-aldehydic nucleoside;

phosphitylating said protected 5'"'"'-aldehydic nucleoside to form a 3'"'"' phosphitylated protected 5'"'"'-aldehydic nucleoside;

deprotecting said 3'"'"' phosphitylated 5'"'"' aldehydic nucleoside;

treating said 3'"'"'60 phosphitylated 5'"'"'-aldehydic nucleoside with a polyamine to form a Schiff'"'"'s base adduct appended to the 5'"'"' end of said 3'"'"' phosphitylated 5'"'"'-aldehydic nucleoside;

reducing said Schiff'"'"'s base adduct to form a 3'"'"' phosphitylated 5'"'"' polyamine nucleoside species wherein said polyamine is attached to said 3'"'"' phosphitylated nucleoside via a nitrogen-carbon covalent bond;

synthesizing a phosphorothioate oligonucleotide having a 3'"'"' and a 5'"'"' end and having a selected sequence of from about 5 to about 50 nucleic acid bases; and

adding said 3'"'"' phosphitylated 5'"'"' polyamine nucleoside to the 5'"'"' end of said phosphorothioate oligonucleotide.

8. The method of claim 7 wherein said polyamine is a primary amine, a hydrazine, a semicarbazide, or a thiosemicarbazide.

9. The method of claim 7 wherein said oxidizing step is performed using 3'"'"' acetylated nucleoside.

10. The method of claim 7 wherein said polyamine has the structure H₂ N(CH₂)_n NH(CH)_n NH-- wherein n is an integer between 2 and 6.