Amplification method for polynucleotide assays

• US 5,273,879 A
• Filed: 11/13/1990
• Issued: 12/28/1993
• Est. Priority Date: 07/23/1987
• Status: Expired due to Term

• Current Assignee: Dade Behring Marburg GmbH (Siemens AG)
• Original Assignee: Syntec Incorporated (Atos SE)
• Inventors: Rose, Samuel, Ullman, Edwin F., Becker, Martin, Goodman, Thomas C.
• Primary Examiner(s): Zitomer, Stephanie W.
• Application Number:
  US07/614,180
• Time in Patent Office: 1,141 Days
• Field of Search: 435/6, 435/91, 435/975, 436/501.94, 536/27, 536/28, 536/29, 536/22.1, 536/24.31, 536/24.32, 935/77, 935/78
• US Class Current: 435/6.18
• CPC Class Codes: C12Q 1/6813 Hybridisation assays
• CPC Class Codes: C12Q 1/683 involving restriction enzymes, e.g. restriction fragment length polymorphism [RFLP]
• CPC Class Codes: C12Q 1/6844 Nucleic acid amplification reactions
• CPC Class Codes: C12Q 1/6853 using modified primers or templates
• CPC Class Codes: C12Q 1/6858 Allele-specific amplification
• CPC Class Codes: C12Q 1/701 Specific hybridization probes
• CPC Class Codes: C12Q 2525/131 incorporating a restriction site
• CPC Class Codes: C12Q 2525/186 incorporating a non-extendable or blocking moiety
• CPC Class Codes: C12Q 2525/307 Circular oligonucleotides

Abstract

A Kit is disclosed for a method for producing multiple copies of a primary polynucleotide sequence located at the 3'"'"' terminus of a polynucleotide. The method comprises (a) forming in the presence of nucleoside triphosphates and template-dependent polynucleotide polymerase an extension of a primary polynucleotide sequence hybridized with a template sequence of a single stranded pattern polynucleotide comprising two or more template sequences each containing one or more site specific cleavage sequences, (b) cleaving into fragments said extension at cleavable polynucleotide sequences in the presence of means for specifically cleaving said cleavable polynucleotide sequences when said extension is hybridized with said site specific cleavage sequences, (c) dissociating said fragments, (d) hybridizing said fragments with single stranded pattern polynucleotide, and repeating steps (a)-(d). Steps (a)-(d) may be conducted simultaneously or wholly or partially sequentially. The method may be applied in the detection of a polynucleotide analyte in a sample suspected of containing such analyte to facilitate such detection. Also disclosed are compositions for conducting the method of the invention.

Claims

1. A kit comprising (a) a single stranded DNA oligomer bonded at its 3'"'"' end to a single stranded polynucleotide binding sequence wherein said binding sequence is complementary to a polynucleotide target sequence comprising 12 to 1000 nucleotides, wherein said oligomer consists of about 3 to 100 oligonucleotide units each consisting of an identical oligonucleotide template sequence having about 8 to 100 nucleotides and at least one restriction site when said template sequence is hybridized to a complementary sequence, wherein said oligomer is consists of only three different nucleotides, said nucleotides being selected from the group consisting of dATP, dTTP, dGTP and dCTP and derivatives thereof, (b) deoxynucleoside triphosphates, (c) DNA-dependent DNA polymerase, (d) restriction endonuclease capable of cleaving said restriction site.

2. The kit of claim 1 which further comprises in combination a single stranded DNA primer comprising a nucleic acid sequence capable of hybridizing with RNA and containing a restriction site, said primer being terminated at its 3'"'"' end by a group incapable of reacting in a chain extension by said DNA-dependent DNA polymerase.

3. The kit of claim 2 which further comprises a restriction enzyme capable of cleaving said primer at said restriction site when said primer is hybridized with said RNA sequence.