Method of synthesizing sulfurized oligonucleotide analogs

• US 5,292,875 A
• Filed: 08/27/1993
• Issued: 03/08/1994
• Est. Priority Date: 04/20/1990
• Status: Expired due to Fees

• Current Assignee: Inex Pharmaceuticals Corporation
• Original Assignee: Lynx Therapeutics, Inc. (Illumina Incorporated)
• Inventors: Fearson, Karen L., Stec, Wojciech J., Hirschbein, Bernard L., Uznanski, Bogdan, Bergot, B. John
• Primary Examiner(s): Lee, Mary C.
• Assistant Examiner(s): AMBROSE, MICHAEL GEORGE
• Application Number:
  US08/113,725
• Time in Patent Office: 193 Days
• Field of Search: 536/25.33, 536/25.34
• US Class Current: 536/25.33
• CPC Class Codes: C07H 21/00 Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids

Abstract

A method for synthesizing sulfurized oligonucleotide analogs, such as phosphorothioate and phosphorodithioate analogs, is provided that employs a thiophosphorus compound, such as a thiophosphoric, dithiophosphoric, thiophosphinic, or dithiophosphinic acid disulfide or polysulfide, as a sulfurizing agent. The method of the invention may be used to sulfurize any phosphorous(III)containing intermediate. Preferably, the method is practiced on a commercial DNA synthesizer using phosophoramidite and/or phosphorthioamidite intermediates.

Claims

1. A method of sulfurizing a phosphate or thiophosphite linkage in an oligonucleotide, the method comprising the step of reacting said phosphite or thiophosphite linkage with a thiophosphorus compound to form a phosphorothioate linkage or a phosphorodithioate linkage, respectively, wherein said thiophosphorus compound is selected from the group consisting of thiophosphoric acid disulfide, dithiophosphoric acid disulfide, thiophosphinic acid disulfide, and dithiophosphinic acid disulfide.

2. The method of claim 1 wherein said thiophosphorus compound is defined by the formulas:

##STR2## wherein;

X is oxygen or sulfur;

Y is oxygen or sulfur; and

R₁, R₂, R₃, and R₄ are separately hydrogen;

alkyl, alkenyl, aryl, acyl, aralkyl, cycloalkyl, or cycloalkylalkyl containing up to 10 carbon atoms;

halo-, nitro-, sulfo-, cyano-, lower alkoxy-substituted alkyl, alkenyl, aryl, acyl, aralkyl, cycloalkyl, or cycloalkylalkyl containing up to 10 carbon atoms;

a lower-alkyl-substituted aryl or arylalkyl containing up to 8 carbon atoms;

a heterocycle containing from 1 to 3 heteroatoms of nitrogen, oxygen, or sulfur, and from 2 to 8 carbon atoms;

or a lower alkyl-, halo-, nitro-, sulfo-, cyano-, lower alkoxy-substituted heterocycle containing from 1 to 3 heteroatoms of nitrogen, oxygen, or sulfur, and from 2 to 8 carbon atoms.

3. The method of claim 2 wherein:

X is sulfur;

Y is sulfur; and

R₁, R₂, R₃, and R₄ are separately hydrogen;

lower alkyl, lower alkenyl, or cycloalkylalkyl, aryl or aralkyl containing up to 8 carbon atoms;

halo-, nitro-, sulfo-, cyano-, lower alkoxy-substituted lower alkyl, lower alkenyl;

or lower alkyl-, halo-, nitro-, sulfo-, cyano-, lower alkoxy-substituted aryl or aralkyl containing up to 8 carbon atoms;

morpholinyl;

thiomorpholinyl;

piperidinyl;

piperazinyl;

or lower alkyl-, halo-, nitro-, sulfo-, cyano-, lower alkoxy-substituted morpholinyl, thiomorpholinyl, piperidinyl, or piperazinyl.

4. The method of claim 3 wherein R₁, R₂, R₃, and R₄ separately are hydrogen, methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, n-pentyl, cyclopentyl, cyclopentylmethyl, isopentyl, neopentyl, n-hexyl, neohexyl, isohexyl, cyclohexyl, cyclohexylmethyl, 2-ethylhexyl, beta-cyclopentylethyl;

methyl-, ethyl-, methoxy-, nitro-, or halo-substituted phenyl;

or methyl-, ethyl-, methoxy-, nitro- or halo-substituted benzyl.

5. The method of claim 4 wherein R₁, R₂, R₃, and R₄ are separately methyl, ethyl, n-propyl, isopropyl, or 2-ethylhexyl.