Highly informative microsatellite repeat polymorphic DNA markers twenty-[seven]six

• US 5,378,602 A
• Filed: 11/27/1991
• Issued: 01/03/1995
• Est. Priority Date: 05/29/1991
• Status: Expired due to Term

• Current Assignee: United States Department Of Health And Human Services (Government of the United States of America)
• Original Assignee: United States Department Of Health And Human Services (Government of the United States of America)
• Inventors: Polymeropoulos, Michael H., Merril, Carl R.
• Primary Examiner(s): BICKEL, MINDY B
• Application Number:
  US07/799,828
• Time in Patent Office: 1,133 Days
• Field of Search: 536/24.33, 536/24.31, 435/91, 435/6, 435/91.2
• US Class Current: 435/6.12
• CPC Class Codes: C12Q 1/6858 Allele-specific amplification
• CPC Class Codes: C12Q 1/6876 Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
• CPC Class Codes: C12Q 2600/156 Polymorphic or mutational markers

Abstract

The invention relates to polymorphic markers (two tetranucleotide, one dinucleotide repeat polymorphisms and 27 markers characterized by primer pairs 1A-27A) that are useful for human individualization. Applications are in forensic medicine and for paternity and prenatal screening as well as genetic mapping. These markers are characterized by sets of oligonucleotide primers according to the invention useful in PCR amplification and DNA segment resolution.

The invention further relates to an assay for measuring the subtle differences in genetic material regarding an added or omitted set of dinucleotide or tetranucleotide repeat polymorphisms which comprises obtaining an amount of nucleotide segments effective for testing, amplifying the segments by the PCR procedure using at least one primer nucleotide sequence according to the present invention, resolving the amplified segments using gel electrophoresis, and comparing the resolved segments by autoradiography to observe the differences in migration patterns due to structural differences. The assay according to the invention is easy to perform and results can be obtained within 24 hours. It is not uncommon results to be available within 3-4 hours. Accordingly, the invention also relates to an improved PCR procedure and a PCR assay kit which comprise nucleotides according to the invention.

Claims

1. An oligonucleotide primer selected from the group consisting of a sequence according to SEQ ID NO:

10 through SEQ ID NO;

35 and SEQ ID NO;

38 through SEQ ID NO;

63.

2. A method for conducting a polymerase chain reaction procedure to detect an added or omitted set of dinucleotide or tetranucleotide repeat polymorphisms, comprising

(A) obtaining a polynucleotide sample in an amount effective for testing;

(B) using an effective amount of at least one oligonucleotide primer according to claim 1, wherein the oligonucleotide primer is used as part of a pair of oligonucleotide primers selected from the group consisting of

a) a sequence as set forth in SEQ ID NO;

10 and a sequence as set forth in SEQ ID NO;

11;

b) a sequence as set forth in SEQ ID NO;

12 and a sequence as set forth in SEQ ID NO;

13;

c) a sequence as set forth in SEQ ID NO;

14 and a sequence as set forth in SEQ ID NO;

15;

d) a sequence as set forth in SEQ ID NO;

16 and a sequence as set forth in SEQ ID NO;

17;

e) a sequence as set forth in SEQ ID NO;

16 and a sequence as set forth in SEQ ID NO;

19;

f) a sequence as set forth in SEQ ID NO;

20 and a sequence as set forth in SEQ ID NO;

21;

g) a sequence as set forth in SEQ ID NO;

22 and a sequence as set forth in SEQ ID NO;

23;

h) a sequence as set forth in SEQ ID NO;

24 and a sequence as set forth in SEQ ID NO;

25;

i) a sequence as set forth in SEQ ID NO;

26 and a sequence as set forth in SEQ ID NO;

27;

j) a sequence as set forth in SEQ ID NO;

28 and a sequence as set forth in SEQ ID NO;

29;

k) a sequence as set forth in SEQ ID NO;

30 and a sequence as set forth in SEQ ID NO;

31;

l) a sequence as set forth in SEQ ID NO;

32 and a sequence as set forth in SEQ ID NO;

33;

m) a sequence as set forth in SEQ ID NO;

34 and a sequence as set forth in SEQ ID NO;

35;

n) a sequence as set forth in SEQ ID NO;

38 and a sequence as set forth in SEQ ID NO;

39;

o) a sequence as set forth in SEQ ID NO;

40 and a sequence as set forth in SEQ ID NO;

41;

p) a sequence as set forth in SEQ ID NO;

42 and a sequence as set forth in SEQ ID NO;

43;

q) a sequence as set forth in SEQ ID NO;

44 and a sequence as set forth in SEQ ID NO;

45;

r) a sequence as set forth in SEQ ID NO;

46 and a sequence as set forth in SEQ ID NO;

47;

s) a sequence as set forth in SEQ ID NO;

48 and a sequence as set forth in SEQ ID NO;

49;

t) a sequence as set forth in SEQ ID NO;

50 and a sequence as set forth in SEQ ID NO;

51;

u) a sequence as set forth in SEQ ID NO;

52 and a sequence as set forth in SEQ ID NO;

53;

v) a sequence as set forth in SEQ ID NO;

54 and a sequence as set forth in SEQ ID NO;

55;

w) a sequence as set forth in SEQ ID NO;

56 and a sequence as set forth in SEQ ID NO;

57;

x) a sequence as set forth in SEQ ID NO;

58 and a sequence as set forth in SEQ ID NO;

59;

y) a sequence as set forth in SEQ ID NO;

60 and a sequence as set forth in SEQ ID NO;

61; and

z) a sequence as set forth in SEQ ID NO;

62 and a sequence as set forth in SEQ ID NO;

63; and

(C) amplifying said sample by said polymerase chain reaction procedure using said pair of oligonucleotide primers capable of amplifying said sample and detecting said polymorphisms.

3. An assay for measuring the subtle differences in genetic material regarding an added or omitted set of dinucleotide or tetranucleotide repeat polymorphisms wherein said genetic material comprises a sequence characterized by a pair of oligonucleotide primers selected from the group consisting of sequence ID NOs:

10-35 and SEQ ID Nos 38-63, which comprises

a. obtaining polynucleotide segments comprising said repeat polymorphisms in an amount effective for testing,

b. amplifying said segments by a polymerase chain reaction procedure using a pair of oligonucleotide primers of claim 2 capable of amplifying said polymorphism containing segments,

c. resolving the amplified segments using polyacrylamide gel electrophoresis, and

d. comparing the resolved segments by autoradiography to observe the differences in migration patterns due to length variation.

4. An assay kit for conducting a polymerase chain reaction procedure comprising an effective amount of at least one oligonucleotide primer having a sequence according to claim 1, wherein the oligonucleotide is part of a pair of oligonucleotide primers selected from the group consisting of

a) a sequence as set forth in SEQ ID NO:

10 and a sequence as set forth in SEQ ID NO;

11;

b) a sequence as set forth in SEQ ID NO;

12 and a sequence as set forth in SEQ ID NO;

13;

c) a sequence as set forth in SEQ ID NO;

14 and a sequence as set forth in SEQ ID NO;

15;

d) a sequence as set forth in SEQ ID NO;

16 and a sequence as set forth in SEQ ID NO;

17;

e) a sequence as set forth in SEQ ID NO;

18 and a sequence as set forth in SEQ ID NO;

19;

f) a sequence as set forth in SEQ ID NO;

20 and a sequence as set forth in SEQ ID NO;

21;

g) a sequence as set forth in SEQ ID NO;

22 and a sequence as set forth in SEQ ID NO;

23;

h) a sequence as set forth in SEQ ID NO;

24 and a sequence as set forth in SEQ ID NO;

25;

i) a sequence as set forth in SEQ ID NO;

26 and a sequence as set forth in SEQ ID NO;

27;

j) a sequence as set forth in SEQ ID NO;

28 and a sequence as set forth in SEQ ID NO;

29;

k) a sequence as set forth in SEQ ID NO;

30 and a sequence as set forth in SEQ ID NO;

31;

l) a sequence as set forth in SEQ ID NO;

32 and a sequence as set forth in SEQ ID NO;

33;

m) a sequence as set forth in SEQ ID NO;

34 and a sequence as set forth in SEQ ID NO;

35;

n) a sequence as set forth in SEQ ID NO;

38 and a sequence as set forth in SEQ ID NO;

39;

o) a sequence as set forth in SEQ ID NO;

40 and a sequence as set forth in SEQ ID NO;

41;

p) a sequence as set forth in SEQ ID NO;

42 and a sequence as set forth in SEQ ID NO;

43;

q) a sequence as set forth in SEQ ID NO;

44 and a sequence as set forth in SEQ ID NO;

45;

r) a sequence as set forth in SEQ ID NO;

46 and a sequence as set forth in SEQ ID NO;

47;

s) a sequence as set forth in SEQ ID NO;

48 and a sequence as set forth in SEQ ID NO;

49;

t) a sequence as set forth in SEQ ID NO;

50 and a sequence as set forth in SEQ ID NO;

51;

u) a sequence as set forth in SEQ ID NO;

52 and a sequence as set forth in SEQ ID NO;

53;

v) a sequence as set forth in SEQ ID NO;

54 and a sequence as set forth in SEQ ID NO;

55;

w) a sequence as set forth in SEQ ID NO;

56 and a sequence as set forth in SEQ ID NO;

57;

x) a sequence as set forth in SEQ ID NO;

58 and a sequence as set forth in SEQ ID NO;

59;

y) a sequence as set forth in SEQ ID NO;

60 and a sequence as set forth in SEQ ID NO;

61; and

z) a sequence as set forth in SEQ ID NO;

62 and a sequence as set forth in SEQ ID NO;

63;

wherein said effective amount of said oligonucleotide primer is in combination with an effective amount of ancillary polymerase chain reaction reagents.