Use of grease or wax in the polymerase chain reaction

• US 5,411,876 A
• Filed: 05/27/1992
• Issued: 05/02/1995
• Est. Priority Date: 02/16/1990
• Status: Expired due to Term

• Current Assignee: Roche Molecular Systems (Roche Holding AG)
• Original Assignee: Hoffmann-La Roche Incorporated (Roche Holding AG)
• Inventors: Read, Alan R., Raymond, Jonathan, Bloch, Will
• Primary Examiner(s): Parr, Margaret
• Assistant Examiner(s): HORLICK, KENNETH R
• Application Number:
  US07/890,300
• Time in Patent Office: 1,070 Days
• Field of Search: 435/6, 435/91, 435/91.2, 208/20, 208/21, 206/219, 206/568, 206/569, 935/16, 935/17, 935/18, 215/233, 436/94
• US Class Current: 435/91.2
• CPC Class Codes: B01L 3/5082 Test tubes per se
• CPC Class Codes: B29C 59/103 of profiled articles, e.g. hollow or tubular articles
• CPC Class Codes: C08J 2471/00 Characterised by the use of polyethers obtained by reactions forming an ether link in the main chain of polyacetals C08J2459/00; of epoxy resins C08J2463/00; of polythioether-ethers C08J2481/02; of polyethersulfones C08J2481/06; Derivatives of such polymers
• CPC Class Codes: C08J 7/0427 with only one layer of a composition containing a polymer binder with more layers C08J7/042
• CPC Class Codes: C08J 7/046 Forming abrasion-resistant coatings; Forming surface-hardening coatings
• CPC Class Codes: C12Q 1/6848 characterised by the means for preventing contamination or increasing the specificity or sensitivity of an amplification reaction
• CPC Class Codes: G01N 2035/00267 Meltable plugs
• CPC Class Codes: G01N 2035/00277 Special precautions to avoid contamination (e.g. enclosures, glove- boxes, sealed sample carriers, disposal of contaminated material)

Abstract

Improvements to the polymerase chain reaction (PCR), a process for in vitro enzymatic amplification of specific nucleic acid sequences, can be achieved by changing the way that PCR reagents are mixed and the enzymatic reaction is started and by the replacement of mineral oil, commonly used as a vapor barrier to minimize solvent evaporation, by a grease or wax. The use of such mixtures allows for the delay of reagent mixing until the first heating step of a PCR amplification, thereby reducing the enzymatic generation of nonspecific products which occurs when a complete mixture of PCR reagents, with or without test sample, stands at room temperature or below. These mixtures increase the shelf-life of PCR reagents and increase protection of the laboratory environment against contamination by PCR product.

Claims

1. A PCR reaction tube comprising a container, an aqueous mixture of PCR reagents, said mixture having contact with the atmosphere, and an amount of grease or wax sufficient in mass to separate completely the aqueous mixture from the atmosphere above it, when said grease or wax is liquified.

2. The reaction tube of claim 1, wherein said container is plastic and wherein the inner surface of said container is hydrophilic.

3. The reaction tube of claim 1, wherein the grease or wax comprises an emulsion with an aqueous solution or suspension of a subset of PCR reagents, and wherein the aqueous mixture comprises a different subset of PCR reagents.

4. The reaction tube of claim 1, wherein said grease or wax comprises a solution in wax or grease of a salt containing magnesium and the conjugate base of a fatty acid and wherein the aqueous mixture comprises a subset of PCR reagents different from magnesium.

5. The reaction tube of claim 1, wherein said grease or wax comprises a solution in grease or wax of a tertiary alkyl ammonium salt of a nucleoside triphosphate and wherein the aqueous mixture comprises a subset of PCR reagents different from any nucleoside triphosphate incorporated in the grease or wax.

6. The reaction tube of claim 1, wherein said grease or wax comprises a solution in grease or wax of a tertiary alkyl ammonium salt of an oligonucleotide and wherein the aqueous mixture comprises a subset of PCR reagents different from any oligonucleotide incorporated in the grease or wax.

7. The reaction tube of claim 1, wherein said grease or wax further comprises a non-ionic surfactant.

8. The reaction tube of claim 1, wherein said aqueous mixture also comprises a nucleic acid targeted by the PCR reagents for amplification.

9. The reaction tube of claim 2, wherein said inner surface has been coated with a non-ionic surfactant.

10. The reaction tube of claim 2, wherein said surface has been rendered hydrophilic by plasma etching.

11. The reaction tube of claim 2, wherein said plastic consists of polypropylene.

12. The reaction tube of claim 4, wherein said fatty acid contains four to twelve carbon atoms.

13. The reaction tube of claim 7, wherein said surfactant is selected from the group consisting of polyoxyethyl sorbitan tristearate and polyoxyethyl sorbitan trioleate.

14. The reaction tube of claim 9, wherein said surfactant is selected from the group consisting of polyoxyethyl sorbitan tristearate and polyoxyethyl sorbitan trioleate.

15. The reaction tube of claim 9, wherein said coating was performed by contacting said surface with a solution of said surfactant at a concentration between about 0.1% and 10% by mass in a solvent substantially free of water, comprising methanol, ethanol, 1-propanol, 2-propanol, 1-butanol, or 2-butanol.

16. A composition comprising a plastic container containing an aqueous mixture of PCR reagents for amplifying nucleic acid using repeated heating and cooling cycles, said mixture having contact with the atmosphere, wherein the inner surface of said container is hydrophilic and wherein said mixture contains a grease or wax sufficient in mass to separate completely the mixture from any atmosphere above it when said grease or wax is liquified.

17. A composition of claim 16 consisting of a mass of grease or wax in the range of about 5 mg to about 50 mg contained within a PCR reaction tube holding between about 10 and about 200 μ

l total aqueous volume.

18. A kit comprising one or more containers containing an aqueous mixture of PCR reagents comprising at least two reagents suitable for conducting PCR said mixture having an exposed surface in contact with the atmosphere and a mass of grease or wax sufficient to cover the exposed surface of PCR reactions when said grease or wax is liquified.

19. A method for sealing a PCR reaction tube containing between about 20 μ

l and 200 μ

l of an aqueous solution, wherein the volume of said tube is less than about 600 μ

l, comprising;

(a) adding between 5 mg and 30 mg of a wax that comprises a non-ionic surfactant dissolved in said wax to a concentration between about 0.1% and about 1% by weight and that melts in the range of about 40°

C. to about 90°

C. to said aqueous solution,

(b) heating said wax to a temperature higher than the melting point of said wax and maintaining said temperature until said wax forms a liquid layer on top of said aqueous solution, and

(c) cooling said liquid layer to form a solid layer completely covering said aqueous solution.

20. The method of claim 19, wherein during step (c), said PCR reaction tube is tilted 10 to 30 degrees off vertical such that if said reaction tube is returned to vertical after step (c), said solid layer formed during step (c) is at a slant 10 to 30 degrees off horizontal.

21. A PCR reaction tube sealed by the method of claim 19, wherein said aqueous solution contains a mixture of PCR reagents wherein said mixture comprises at least two reagents suitable for conducting PCR.

22. A kit comprising the PCR reaction tube of claim 21.

23. A method for producing a vapor barrier over an aqueous mixture of PCR reagents in a tube, said mixture having an upper surface exposed to the atmosphere and said method comprising the steps of:

(a) adding an amount of wax to the aqueous mixture sufficient when liquified to form a vapor barrier on the upper surface of the mixture;

(b) heating the aqueous mixture to initiate the amplification reaction said heat sufficient to liquify the wax; and

(c) permitting the liquified wax to flow upon the upper surface of the mixture forming a vapor barrier.

24. A method of claim 23 wherein the wax contains at least one of the PCR reagents with the proviso that said wax does not comprise a solution containing polymerase.

25. A method of claim 24 wherein the wax comprises magnesium ions.

26. A method claim 23 wherein the wax contains a non-ionic surfactant.

27. A method of claim 23 wherein the aqueous mixture is cooled and the wax solidified upon the upper surface of the aqueous mixture.