Production of chimeric antibodies - a combinatorial approach

• US 5,565,332 A
• Filed: 06/24/1994
• Issued: 10/15/1996
• Est. Priority Date: 09/23/1991
• Status: Expired due to Term

• Current Assignee: Cambridge Silicon Radio Limited (Qualcomm, Inc.)
• Original Assignee: Medical Research Council (Government of United Kingdom), Cambridge Silicon Radio Limited (Qualcomm, Inc.)
• Inventors: Hoogenboom, Hendricus R. J. M., Jespers, Laurent S. A. T., Baier, Michael, Winter, Gregory P.
• Primary Examiner(s): ADAMS, DONALD
• Application Number:
  US08/211,202
• Time in Patent Office: 844 Days
• Field of Search: 530/387.1, 530/387.3, 530/867, 435/5, 435/91.1, 435/69.1, 435/69.7, 435/69.8, 435/235.1, 435/320.1, 435/252.3, 435/252.33, 536/23.1, 536/23.53, 536/23.4
• US Class Current: 435/69.1
• CPC Class Codes: B01J 2219/00718 Type of compounds synthesised
• CPC Class Codes: C07K 16/18 against material from animals or humans
• CPC Class Codes: C07K 16/22 against growth factors ; against growth regulators
• CPC Class Codes: C07K 16/241 Tumor Necrosis Factors
• CPC Class Codes: C07K 16/28 against receptors, cell surface antigens or cell surface determinants
• CPC Class Codes: C07K 16/2812 against CD4
• CPC Class Codes: C07K 16/2863 against receptors for growth factors, growth regulators
• CPC Class Codes: C07K 16/2866 against receptors for cytokines, lymphokines, interferons
• CPC Class Codes: C07K 16/3007 Carcino-embryonic Antigens
• CPC Class Codes: C07K 16/40 against enzymes
• CPC Class Codes: C07K 16/4208 against an idiotypic determinant on Ig
• CPC Class Codes: C07K 16/462 Igs containing a variable region (Fv) from one specie and a constant region (Fc) from another
• CPC Class Codes: C07K 16/468 Immunoglobulins having two or more different antigen binding sites, e.g. multifunctional antibodies
• CPC Class Codes: C07K 2317/24 containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
• CPC Class Codes: C07K 2317/34 Identification of a linear epitope shorter than 20 amino acid residues or of a conformational epitope defined by amino acid residues
• CPC Class Codes: C07K 2317/55 Fab or Fab'
• CPC Class Codes: C07K 2317/622 Single chain antibody (scFv)
• CPC Class Codes: C07K 2319/00 Fusion polypeptide
• CPC Class Codes: C07K 2319/02 containing a signal sequence
• CPC Class Codes: C07K 2319/41 containing a Myc-tag
• CPC Class Codes: C07K 2319/735 : containing a domain for self-assembly, e.g. a viral coat protein (includes phage display)
• CPC Class Codes: C12N 15/1037 : Screening libraries presented on the surface of microorganisms, e.g. phage display, E. coli display
• CPC Class Codes: C12N 15/62 : DNA sequences coding for fusion proteins
• CPC Class Codes: C40B 40/02 : Libraries contained in or displayed by microorganisms, e.g. bacteria or animal cells; Libraries contained in or displayed by vectors, e.g. plasmids; Libraries containing only microorganisms or vectors
• CPC Class Codes: Y10S 530/867 : involving immunoglobulin or antibody produced via recombinant dna technology

Abstract

Methods are disclosed which may be used for the production of antibodies, or antibody fragments, which have the same binding specificity as a parent antibody but which have increased human characteristics. Humanized antibodies may be obtained by chain shuffling, perhaps using phage display technology. In one embodiment, a polypeptide comprising a heavy or light chain variable domain of a non-human antibody specific for an antigen of interest is combined with a repertoire of human complementary (light or heavy) chain variable domains. Hybrid pairings which are specific for the antigen of interest are selected. Human chains from the selected pairings may then be combined with a repertoire of human complementary variable domains (heavy or light) and humanized antibody polypeptide dimers can then be selected for binding specificity for antigen. The methods may be combined with CDR-imprinting. In another embodiment, component part of an antigen-binding site of a no-human antibody known to bind a particular antigen is combined with a repertoire of component parts of an antigen-binding site of human antibody, forming a library of antibody polypeptide dimers with antigen-binding sites. Hybrids selected from this library may be used in a second humanizing shuffling step, or may already be of sufficient human character to be of value, perhaps after some modification to increase human character still further.

Claims

1. A method of making antibody polypeptide dimers specific for an antigen of interest, having the following steps:

(i) providing nucleic acid expression vectors which are packaged using a component of a replicable genetic display package;

(ii) combining (a) a genetically diverse repertoire of nucleic acid sequences which each encode a first component part of an antigen-binding site of a human antibody with (b) nucleic acid which encodes a unique or genetically diverse population of a second component part of an antigen-binding site of a non-human antibody known to bind said antigen of interest, to form a library of nucleic acid sequences on said expression vectors encoding antibody polypeptide dimers, which dimers each consist of a first polypeptide chain component and a second polypeptide chain component, in combination forming an antigen-binding site of an antibody polypeptide dimer, wherein said library contains nucleic acid encoding an antibody polypeptide dimer specific for an antigen of interest;

(iii) expressing said library from said vectors in recombinant host organism cells, each of the said first polypeptide chain components being expressed as a fusion with a component of a replicable genetic display package which thereby displays said first polypeptide chain component at the surface of replicable genetic display packages;

(iv) selecting from said expressed library by binding with antigen a unique or restricted population of said antibody polypeptide dimers which have binding specificity for said antigen of interest, each selected antibody polypeptide dimer being associated in its respective replicable genetic display package with nucleic acid encoding said first component part of the antigen-binding site thereof.

2. A method according to claim 1 wherein said antibody polypeptide dimers are expressed as soluble polypeptides after selection in step (iv).

3. A method according to claim 1 wherein the sequence encoding each said second component part of an antigen-binding site of a non-human antibody is modified by genetic alteration, said alteration is selected from the group consisting of mutation, point mutation, insertion and deletion, to increase the homology of said second component part of an antigen-binding site to a second component part of a human antibody prior to said combining in step (ii).

4. A method according to claim 1 having an additional step (v) wherein antibody polypeptide dimers selected in step (iv) are modified by genetic alteration, said alteration is selected from the group consisting of mutation, point mutation, insertion and deletion, to remove or reduce non-human sequences.

5. A method according to claim 1 having an additional step (v) comprising:

a) obtaining nucleic acid encoding said first component part from its replicable genetic display package, displaying an antibody polypeptide dimer selected in step VI and combining the obtained nucleic acid with a genetically diverse repertoire of nucleic acid sequences each encoding a second component part of an antigen-binding site of human antibody, to form a second library of nucleic acid sequences encoding antibody polypeptide dimers, each antibody polypeptide dimer comprising a second antibody polypeptide chain component which is expressed from nucleic acid which is packaged using a component of a replicable genetic display package, said second chain component being expressed as a fusion with a component of a replicable genetic display package which thereby display said second chain component at the surface of replicable genetic display packages, so that antibody polypeptide dimers specific for said antigen of interest, are selectable from said second library by binding with said antigen of interest.

6. A method according to claim 1 wherein said second component part of an antigen-binding site of a non-human antibody is an antibody region which binds an antigen.

7. A method according to claim 1 wherein said second component part of an antigen-binding site of a non-human antibody is an antibody complementarity determining region.

8. A method according to claim 1 wherein each antibody polypeptide dimer of any of said libraries of antibody polypeptide dimers is expressed as a single polypeptide chain.

9. A method according to claim 1 wherein each antibody polypeptide dimer of any of said libraries of antibody polypeptide dimers is expressed as two polypeptide chains.

23. The method of claim 9 wherein said single polypeptide chain is a scFv fragment.

10. A method of making human antibody polypeptide dimers specific for an antigen of interest, comprising:

(i) combining a diverse population of polypeptides each comprising a variable domain of a first polypeptide chain of a human antibody (population A) with a unique or restricted population of polypeptides each comprising a variable domain of a second polypeptide chain of a non-human antibody specific for said antigen (population B), thereby forming a library of antibody polypeptide dimers each consisting of a polypeptide which comprises a variable domain of a first polypeptide chain of a human antibody and a polypeptide chain of a non-human antibody, wherein said library contains an antibody polypeptide dimer specific for an antigen of interest;

(ii) selecting from said library a unique or restricted population of said antibody polypeptide dimers which have binding specificity for said antigen (population c);

(iii) combining a unique or restricted population of human polypeptides derived from polypeptide dimers selected in step (ii) each comprising a human first polypeptide chain (population D) with a diverse population of polypeptides each comprising a variable domain of a second polypeptide chain of a human antibody (population E), thereby forming a library of human antibody polypeptide chain dimers from which a unique or restricted population chain dimers from which a unique or restricted population of human antibody polypeptide dimers specific for said antigen (population F) are selectable.

11. A method according to claim 10 wherein:

(a) said polypeptides of population A are each expressed from a vector (X) in recombinant host organism cells as a fusion with a component of a replicable genetic display package which thereby displays said polypeptide at the surface of replicable genetic display packages in a first population of replicable genetic display packages;

(b) nucleic acid of said vector (X) is packaged using said replicable genetic display package component, whereby the genetic material of each said replicable genetic display package encodes a said polypeptide of population A, so that the antibody polypeptide dimers of population C are each associated in their respective replicable genetic display package with nucleic acid encoding a polypeptide comprising a variable domain of a first polypeptide chain of a human antibody;

(c) each of said polypeptides of population E is expressed from a vector (Y) in recombinant host organism cells as a fusion with a component of a replicable genetic display package which thereby displays it at the surface of replicable genetic display packages in a second population of replicable genetic display packages; and

(d) nucleic acid of said vector (Y) is packaged using said replicable genetic display package component, whereby the genetic material of each said replicable genetic display package in the second population of replicable genetic display packages encodes a said polypeptide of population E.

12. A method according to claim 11 wherein said population A is not expressed from the same vector as said population B;

and said population D is not expressed from the same vector as said population E.

13. A method according to claim 10 wherein said population A is expressed from the same vector as said population B;

and said population D is expressed from the same vector as said population E.

14. A method according to claim 13 wherein each antibody polypeptide dimer of any of said libraries of antibody polypeptide dimers is expressed as a single polypeptide chain.

15. A method according to claim 11 wherein each antibody polypeptide dimer of any of said libraries of antibody polypeptide dimers is expressed as two polypeptide chains.

16. A method according to claim 10 wherein polypeptides of said population B are chimaeric, each comprising a human antibody constant domain.

17. A method according to claim 11 wherein the polypeptides of said population E each comprise a region from a non-human antibody specific for said antigen, which region is one which binds antigen.

18. A method according to claim 11 wherein the polypeptides of said population E each comprise a complementarity determining region from a non-human antibody which specifically binds said antigen.

19. A method according to claim 18 wherein said CDR is CDR3.

20. A method according to claim 11 wherein said first polypeptide chain is antibody light chain, said second polypeptide chain being antibody heavy chain.

21. A method according to claim 11 comprising an additional step of selecting said population F of human polypeptide dimers specific for said antigen.

22. A method according to claim 11 wherein any one of said populations C and F is selected by binding with said antigen.

24. The method of claim 10 wherein said two polypeptide chains are selected from the group consisting of Fv and Fab fragments.

25. The method of claim 15 wherein said single polypeptide chain is a scFv fragment.

26. The method of claim 16 wherein said two polypeptide chains are selected from the group consisting of Fv and Fab fragments.