Methods for measuring telomere length

• US 5,741,677 A
• Filed: 06/07/1995
• Issued: 04/21/1998
• Est. Priority Date: 06/07/1995
• Status: Expired due to Term

• Current Assignee: Geron Corporation
• Original Assignee: Geron Corporation
• Inventors: Wong, Sharon, Prowse, Karen R., Wang, Sy-shi, Allsop, Richard, Kozlowski, Michael R., Kim, Nam Woo
• Primary Examiner(s): Jones, W. Gary
• Assistant Examiner(s): REES, DIANE
• Application Number:
  US08/479,916
• Time in Patent Office: 1,049 Days
• Field of Search: 435/6, 435/174, 435/91.2, 536/23.1, 536/24.3, 536/24.33
• US Class Current: 435/91.2
• CPC Class Codes: C12Q 1/6816 characterised by the detection means C12Q1/6804 takes precedence
• CPC Class Codes: C12Q 2521/301 Endonuclease
• CPC Class Codes: C12Q 2565/518 characterised by the immobilisation of the nucleic acid sample or target

Abstract

Methods are provided for the determination of telomere length. These methods can be used for diagnosis of cancer and the staging of cancer, and diagnosis of senecesence in cells. Also, the instant methods can be used to determine stages of diseases such as atherosclerosis or HIV infection, and can be used to diagnose infertility.

Claims

1. A method for measuring an average length of telomeres in a sample comprising a cell or tissue, said method comprising steps of:

(a) contacting said telomeres with an oligonucleotide linker under conditions such that said linker is covalently linked to a 3'"'"' end of said telomeres;

(b) amplifying with a first primer complementary to said oligonucleotide linker and a second primer complementary to a subtelomeric region of a chromosome under conditions in a reaction mixture such that said first and second primers hybridize specifically to said linker and subtelomeric region, respectively, and are extended by a polymerase, thereby forming first and second primer extension products; and

(c) measuring an amount by which said first and/or second primer has been extended to form said extension products or duplex nucleic acids comprising said first and second primer extension products to determine an average telomere length.

3. The method of claim 1, wherein said telomere length determined in step (c) is correlated to a condition or stage of a condition associated with an increased rate of proliferation by comparing said telomere length to a control telomere length obtained by measuring telomere length in a sample obtained from a control subject, and correlating a decrease in telomere length relative to said control telomere length with said condition or stage of a condition.

4. The method of claim 1, wherein step (b) comprises steps of:

(1) heating said reaction mixture to denature duplex DNA molecules; and

(2) cooling said reaction mixture to a temperature at which complementary nucleic acids can hybridize and said primers can extend.

5. The method of claim 1, wherein said telomere length is correlated to proliferative capacity of a cell in said sample.

6. The method of claim 4, wherein said heating and cooling steps are repeated and said first and second primers are present in amounts sufficient for formation of primer extension products after each heating step.

7. The method of claim 3, wherein said condition is atherosclerosis.

8. The method of claim 3, wherein said condition is HIV-infection.

2. A method of diagnosing infertility in males, wherein said method comprises steps of:

(a) measuring telomere length in a sperm sample from a subject to obtain a measured telomere length, by;

(i) contacting telomeres in said sperm sample with an oligonucleotide linker under conditions such that said linker is covalently linked to a 3'"'"' end of said telomeres;

(ii) amplifying with a first primer complementary to said oligonucleotide linker and a second primer complementary to a subtelomeric region of a chromosome under conditions such that said first and second primers hybridize specifically to said linker and subtelomeric region, respectively, and are extended by a polymerase, thereby forming first and second primer extension products; and

(iii) measuring an amount by which said first and/or second primer has been extended to form said first and second primer extension products or duplex nucleic acids comprising said extension products to determine an average telomere length;

(b) comparing said measured telomere length to a control telomere length obtained by measuring telomere length in a sperm sample obtained from a fertile male; and

(c) correlating a decreased telomere length in said sample from said subject, as compared to said control telomere length, with infertility.