3' protected nucleotides for enzyme catalyzed template-independent creation of phosphodiester bonds

• US 5,763,594 A
• Filed: 06/07/1995
• Issued: 06/09/1998
• Est. Priority Date: 09/02/1994
• Status: Expired due to Term

• Current Assignee: Solexa Incorporated (Illumina Incorporated)
• Original Assignee: Andrew C. Hiatt, Floyd D. Rose
• Inventors: Hiatt, Andrew C., Rose, Floyd
• Primary Examiner(s): Leary, Louise N.
• Application Number:
  US08/486,913
• Time in Patent Office: 1,098 Days
• Field of Search: 536/25.1, 536/26.1, 536/25.3, 536/25.31, 536/25.32, 536/25.33, 536/25.34, 435/6
• US Class Current: 536/25.3
• CPC Class Codes: C07H 19/10 with the saccharide radical esterified by phosphoric or polyphosphoric acids
• CPC Class Codes: C07H 19/20 with the saccharide radical esterified by phosphoric or polyphosphoric acids
• CPC Class Codes: C07H 21/00 Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
• CPC Class Codes: C12P 19/30 Nucleotides
• CPC Class Codes: Y02P 20/55 Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups

Abstract

A method for the stepwise creation of phosphodiester bonds between desired nucleosides resulting in the synthesis of polynucleotides having a predetermined nucleotide sequence by preparing an initiation substrate containing a free and unmodified 3'"'"'-hydroxyl group; attaching a mononucleotide selected according to the order of the predetermined nucleotide sequence to the 3'"'"'-hydroxyl of the initiating substrate in a solution containing a catalytic amount of an enzyme capable of catalyzing the 5'"'"' to 3'"'"' phosphodiester linkage of the 5'"'"'-phosphate of the mononucleotide to the 3'"'"'-hydroxyl of the initiating substrate, wherein the mononucleotide contains a protected 3'"'"'-hydroxyl group, whereby the protected mononucleotide is covalently linked to the initiating substrate and further additions are hindered by the 3'"'"'-hydroxyl protecting group. Methods in which a mononucleotide immobilized on a solid support is added to a free polynucleotide chain are also disclosed.

Claims

1. A nucleoside 5'"'"'-triphosphate having a removable blocking moiety protecting the 3'"'"' position which is selected from the group consisting of esters, ethers, carbonitriles, phosphates, carbonates, carbamates, borates, nitrates, sugars, phosphoramidates, phenylsulfanates, sulfates and sulfones, wherein said removable blocking moiety is linked to the 3'"'"' carbon of said nucleoside 5'"'"'-triphosphate.

2. A nucleoside 5'"'"'-triphosphate having a removable blocking moiety protecting the 3'"'"' position having the following formula:

##STR19## wherein R₂ is triphosphate and wherein R₁ is selected from the group consisting of phosphate, phosphoramidate and phosphoramide.

3. The nucleoside 5'"'"' triphosphate of claim 2 wherein R₁ is phosphate.

4. The nucleoside 5'"'"'-phosphate of claim 2 wherein said removable blocking moiety is removable by an enzyme.

5. The nucleoside 5'"'"'-triphosphate of claim 2 wherein said removable blocking moiety is removable by a reaction which occurs within 2 to 10 minutes.

6. The nucleoside 5'"'"'-triphosphate of claim 2 wherein said removable blocking moiety is linked to a solid support.