Single-stranded labelled oligonucleotides of preselected sequences

• US 5,817,786 A
• Filed: 03/10/1997
• Issued: 10/06/1998
• Est. Priority Date: 02/22/1983
• Status: Expired due to Fees

• Current Assignee: Molecular Biosystems, Inc (Alliance Pharmaceutical Corporation)
• Original Assignee: Molecular Biosystems, Inc (Alliance Pharmaceutical Corporation)
• Inventors: Ruth, Jerry L.
• Primary Examiner(s): Kight, John
• Assistant Examiner(s): Crane, L. Eric
• Application Number:
  US08/814,289
• Time in Patent Office: 575 Days
• Field of Search: 536/24.3, 536/24.32, 536/23.1, 435/6
• US Class Current: 536/23.1
• CPC Class Codes: C07H 19/04 Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
• CPC Class Codes: C07H 21/00 Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
• CPC Class Codes: C12Q 1/6813 Hybridisation assays

Abstract

Substantially pure single-stranded oligonucleotides having a preselected sequence of not more than about 200 nucleotides, at least one of which is at a preselected position in the sequence and includes a base with a covalently attached linker arm containing or capable of binding at least one reporter group or solid support. A process for the chemical synthesis of the substantially pure single-stranded oligonucleotide and modified nucleosides useful in such synthesis are provided.

Claims

1. A composition of single-stranded oligonucleotides, wherein the sequence of each of said oligonucleotides is substantially identical to the sequence of each of the other oligonucleotides in said composition,

wherein each of said oligonucleotides has a sequence length of not more than approximately 200 nucleotides,

wherein said oligonucleotides are prepared from nucleotide monomers, at least one of which has a linker arm attached to the base of said nucleotide, said nucleotide being substantially identically located in each of said oligonucleotides, and

wherein said linker arm is further attached to a moiety capable of binding a reporter group or a solid support.

2. A composition according to claim 1 wherein said linker arm is attached at a sterically tolerant site.

3. A composition according to claim 1 wherein said base is a pyrimidine and said linker arm is attached to the C-5 position thereof.

4. A composition according to claim 1 wherein said base is a purine and said linker arm is attached to the C-8 position thereof.

5. A composition according to claim 1 wherein said identical sequence is between about 10 to about 40 nucleotides in length.

6. A composition according to claim 1 wherein said moiety is blocked.