Dry biochemical assay plate and method for making the same

• US 5,922,534 A
• Filed: 03/28/1995
• Issued: 07/13/1999
• Est. Priority Date: 03/28/1995
• Status: Expired due to Fees

• Current Assignee: Agilent Technologies, Inc.
• Original Assignee: Hewlett-Packard Company (HP Inc.)
• Inventors: Lichtenwalter, Kay
• Primary Examiner(s): Chin, Christopher L.
• Application Number:
  US08/412,498
• Time in Patent Office: 1,568 Days
• Field of Search: 422/56, 422/57, 427/2.11, 427/2.13, 427/541, 427/372.2, 435/4, 435/6, 435/174, 435/176, 435/180, 435/287.1, 435/287.2, 435/288.3, 435/810, 435/970, 436/518, 436/524, 436/527, 436/531, 436/809
• US Class Current: 435/6.12
• CPC Class Codes: B01J 19/0046 Sequential or parallel reactions, e.g. for the synthesis of polypeptides or polynucleotides; Apparatus and devices for combinatorial chemistry or for making molecular arrays synthesis methods per se C40B50/00
• CPC Class Codes: B01J 2219/00364 Pipettes
• CPC Class Codes: B01J 2219/00527 Sheets
• CPC Class Codes: B01J 2219/00529 DNA chips
• CPC Class Codes: B01J 2219/0054 Means for coding or tagging the apparatus or the reagents
• CPC Class Codes: B01J 2219/00585 Parallel processes
• CPC Class Codes: B01J 2219/00596 Solid-phase processes
• CPC Class Codes: B01J 2219/00605 the compounds being directly bound or immobilised to solid supports
• CPC Class Codes: B01J 2219/00608 DNA chips
• CPC Class Codes: B01J 2219/00612 the surface being inorganic
• CPC Class Codes: B01J 2219/00626 Covalent
• CPC Class Codes: B01J 2219/00637 by coating it with another layer
• CPC Class Codes: B01J 2219/00659 Two-dimensional arrays
• CPC Class Codes: B01J 2219/00722 Nucleotides
• CPC Class Codes: C12Q 1/6834 Enzymatic or biochemical coupling of nucleic acids to a solid phase
• CPC Class Codes: C40B 40/06 Libraries containing nucleotides or polynucleotides, or derivatives thereof
• CPC Class Codes: C40B 50/14 Solid phase synthesis, i.e. wherein one or more library building blocks are bound to a solid support during library creation; Particular methods of cleavage from the solid support
• CPC Class Codes: C40B 60/14 for creating libraries
• CPC Class Codes: C40B 70/00 Tags or labels specially adapted for combinatorial chemistry or libraries, e.g. fluorescent tags or bar codes
• CPC Class Codes: G01N 33/543 with an insoluble carrier for immobilising immunochemicals
• CPC Class Codes: Y10S 435/81 : Packaged device or kit
• CPC Class Codes: Y10S 435/97 : Test strip or test slide
• CPC Class Codes: Y10S 436/805 : Optical property
• CPC Class Codes: Y10S 436/809 : Multifield plates or multicontainer arrays

Abstract

An assay plate for detecting the presence of a mobile reactant that binds to a immobilized reactant and the methods of making and using the same. An assay plate according to the present invention includes a substrate and at least one dried aliquot of the immobilized reactant, the immobilized reactant being bound to the surface of the substrate. The immobilized reactant binds the mobile reactant when a solution containing the mobile reactant is brought into contact with the immobilized reactant. The mobile and immobilized reactants may be any pair of biological compounds that have a specific affinity for one another. For example the reactants may be nucleic acids or antibody-antigen pairs. The preferred embodiment of an assay plate according to the present invention includes a plurality of assay spots, each spot having a different immobilized reactant or concentration thereof. The preferred method for fabricating an assay plate according to the present invention includes the steps of binding the immobilized reactant to the substrate, washing the substrate to remove any immobilized reactant that is not bound to the substrate and then drying the substrate. The dried assay plates are preferably stored in a water-proof container until used. An assay utilizing an assay plate according to the present invention is carried out by bringing a solution containing the mobile reactant into contact with the dried aliquot or aliquots on the assay plate. The assay plate is then washed to removed unbound material and the amount of mobile reactant bound to the washed assay plate determined. In the preferred embodiment of the present invention, the washed assay plate is dried prior to measuring the amount of mobile reactant bound to the washed assay plate.

Claims

1. An assay plate for detecting the presence of a first predetermined type of oligonucleotide in a solution containing an unknown oligonucleotide, the assay plate comprising:

a fused silica substrate; and

a dried aliquot of a first known oligonucleotide, the dried aliquot covalently bonded to the fused silica substrate, the known oligonucleotide operative to bind said predetermined type of oligonucleotide upon contact with a solution containing such predetermined type of oligonucleotide.

2. The assay plate of claim 1 wherein said predetermined type of oligonucleotide comprises a nucleic acid and said known oligonucleotide comprises a nucleic acid.

3. The assay plate of claim 1 wherein said predetermined type of oligonucleotide and said known oligonucleotide comprise a complementary pair.

4. The assay plate of claim 1 further comprising a moisture proof covering for protecting said dried aliquot from moisture during the storage of said assay plate.

5. The assay plate of claim 1 further comprising a dried aliquot of a second known oligonucleotide, said dried aliquot of said second known oligonucleotide being at a different location on said substrate that said dried aliquot of said first known oligonucleotide, said second known oligonucleotide binding a second predetermined type of oligonucleotide in a solution.

6. A method for making an assay plate for detecting the presence of a mobile oligonucleotide that binds to an immobilized known oligonucleotide, said method comprising the steps of:

covalently binding said known oligonucleotide to a fused silica substrate to immobilize the known oligonucleotide;

washing said substrate to remove any of said known oligonucleotide that fails to bind to said substrate; and

drying said substrate and said bound immobilized oligonucleotide.

7. The method of claim 6 wherein said mobile and immobilized oligonucleotides comprise nucleic acids.

8. The method of claim 6 wherein said mobile oligonucleotide and said known oligonucleotide comprise a complementary pair.

9. The method of claim 6 further comprising the step of packaging said substrate in a moisture proof covering for protecting said immobilized oligonucleotide from moisture during the storage of said assay plate.

10. The method of claim 6 wherein the step of covalently binding the immobilized oligonucleotide to a fused silica substrate comprises:

coating the substrate with a solution of amino propyl triethoxy silane;

linking the oligonucleotide that is to be immobilized to a linker;

depositing the linked oligonucleotide to the coated substrate; and

incubating the substrate.

11. A method for detecting a mobile nucleic acid comprising the steps of:

providing an assay plate of fused silica having a dried aliquot of an immobilized nucleic acid covalently bound thereon, said immobilized nucleic acid binding said mobile nucleic acid when both said immobilized nucleic acid and said mobile nucleic acid are in a wet state;

bringing a solution containing said mobile nucleic acid into contact with said dried aliquot;

washing said assay plate;

treating with a dye that binds to one of said immobilized nucleic acid or said mobile nucleic acid; and

determining the amount of mobile nucleic acid bound to said washed assay plate by measuring the dye.

12. The method of claim 11 further comprising the step of drying said washed assay plate prior to determining the amount of mobile nucleic acid bound to said washed assay plate.

13. The method of claim 12 wherein the step of determining the amount of mobile nucleic acid is performed without adding water to the dried assay plate.

14. The method of claim 11 wherein the step of treating with dye comprises binding the dye to the mobile nucleic acid prior to bringing the solution into contact with the dried aliquot.

15. The method of claim 11 wherein the step of treating with dye comprises depositing the dye on the dried aliquot after bringing the solution into contact with the dried aliquot.

16. A method for making an assay plate for detecting the presence of a mobile oligonucleotide that binds to an immobilized known oligonucleotide, said method comprising the steps of:

covalently binding said known oligonucleotide to a fused silica substrate to immobilize the know oligonucleotide;

washing said substrate to remove any of said known oligonucleotide that fails to bind to said substrate; and

drying said substrate and said bound immobilized oligonucleotide,

wherein the step of covalently binding the immobilized oligonucleotide to a fused silica substrate comprises;

coating the substrate with a solution of amino propyl thriethoxy silane;

linking the oligonucleotide that is to be immobilized to a linker;

depositing the linked oligonucleotide to the coated substrate; and

incubating the substrate, and

wherein the step of coating the substrate comprises coating a surface of the substrate with a one percent solution of amino propyl triethoxy silane in ninety-five percent ethanol, and incubating at room temperature in a covered enclosure.

17. A method for making an assay plate for detecting the presence of a mobile oligonucleotide that binds to an immobilized known oligonucleotide said method comprising the steps of:

covalently binding said known oligonucleotide to a fused silica substrate to immobilize the known oligonucleotide;

washing said substrate to remove any of said known oligonucleotide that fails to bind to said substrate; and

drying said substrate and said bound immobilized oligonucleotide,

wherein the step of covalently binding the immobilized oligonucleotide to a fused silica substrate comprises;

coating the substrate with a solution of amino propyl thriethoxy silane;

linking the oligonucleotide that is to be immobilized to a linker;

depositing the linked oligonucleotide to the coated substrate; and

incubating the substrate, and

wherein the linker comprises Bis succinimydl suberate-homobifunctional NHS-ester.

18. A method for making an assay plate for detecting the presence of a mobile oligonucleotide that binds to an immobilized known oligonucleotide, said method comprising the steps of:

covalently binding said known oligonucleotide to a fused silica substrate to immobilize the know oligonucleotide;

washing said substrate to remove any of said known oligonucleotide that fails to bind to said substrate; and

drying said substrate and said bound immobilized oligonucleotide,

wherein the drying step is carried out in an atmosphere of nitrogen.