Method and reagent for monitoring apoptosis and distinguishing apoptosis from necrosis

• US 5,976,822 A
• Filed: 08/20/1997
• Issued: 11/02/1999
• Est. Priority Date: 05/18/1995
• Status: Expired due to Fees

• Current Assignee: Coulter International Corp. (Danaher Corporation), MANI Incorporated
• Original Assignee: Coulter International Corp. (Danaher Corporation)
• Inventors: Garcia, Nancy, Galiounghi, Adry, Del Valle, Ursino, Lucas, Frank J., Landrum, Eileen
• Primary Examiner(s): Leary, Louise N.
• Application Number:
  US08/915,414
• Time in Patent Office: 804 Days
• Field of Search: 435/23, 435/24, 435/4, 435/968, 435/29, 435/34
• US Class Current: 435/23
• CPC Class Codes: C12Q 1/26 involving oxidoreductase
• CPC Class Codes: C12Q 1/34 involving hydrolase
• CPC Class Codes: C12Q 1/37 involving peptidase or proteinase
• CPC Class Codes: G01N 2333/95 Proteinases, i.e. endopeptidases (3.4.21-3.4.99)
• CPC Class Codes: G01N 2333/96413 Cysteine endopeptidases (3.4.22)
• CPC Class Codes: G01N 2333/96466 Cysteine endopeptidases (3.4.22)
• CPC Class Codes: G01N 2333/96469 Interleukin 1-beta convertase-like enzymes
• CPC Class Codes: G01N 2800/52 Predicting or monitoring the response to treatment, e.g. for selection of therapy based on assay results in personalised medicine; Prognosis
• CPC Class Codes: G01N 33/574 for cancer
• CPC Class Codes: G01N 33/582 with fluorescent label
• CPC Class Codes: Y10S 435/968 High energy substrates, e.g. fluorescent, chemiluminescent, radioactive

Abstract

The ability to determine the stage or pathway of cysteine proteases in a single cell assay has long been desired as a material event in apoptosis. The present invention relates to a method and assay reagents for determining enzyme activity and relating said activity to the apoptotic pathway. In addition, the method find utility in distinguishing apoptotic activity from necrotic activity.

Claims

1. An assay reagent for determining the activity of an enzyme in a metabolically active whole cell, said assay reagent comprising at least one water soluble physiologically acceptable salt having the ability to pass through a cell membrane, said assay compound having an unblocked leaving group selected for cleavage by an enzyme to be analyzed selected from cysteine protease, dipeptyl peptidase and calpain, and a fluorogenic indicator group being selected for its ability to have a non-fluorescent first state when joined to the leaving group, and a fluorescent second state excitable at a wavelength above 450 nm when the unblocked leaving group is cleaved from the indicator group by the enzyme, wherein said fluorogenic indicator group is selected from the group consisting of rhodamine 110, rhodol, fluorescein and derivative thereof, said assay reagent having a fluorescence less than the auto-fluorescence of a metabolically active cell.

2. The assay reagent of claim 1, wherein the enzyme is a caspase enzyme of cysteine proteases.

3. The assay reagent of claim 1, wherein the enzyme is a granzyme of cysteine proteases.

4. The assay reagent of claim 1 wherein said derivatives of the indicator group are selected from the group consisting of 4'"'"'(5'"'"')aminorhodamine 110, 4'"'"'(5'"'"')carboxyrhodamine 110, 4'"'"'(5'"'"')chlororhodamine 110, 4'"'"'(5'"'"')methylrhodamine 110, 4'"'"'(5'"'"')sulforhodamine 110, 4'"'"'(5'"'"')aminorhodol, 4'"'"'(5'"'"')carboxyrhodol, 4'"'"'(5'"'"')chlororhodol, 4'"'"'(5'"'"')methylrhodol, 4'"'"'(5'"'"')sulforhodol, 4'"'"'(5'"'"')aminofluorescein, 4'"'"'(5'"'"')carboxyfluorescein, 4'"'"'(5'"'"')chlorofluorescein, 4'"'"'(5'"'"')methylfluorescein, and 4'"'"'(5'"'"')sulfofluorescein.

5. The assay reagent of claim 1, wherein said unblocked leaving group has an amino acid sequence selected from YVAD, DEVD, VEID, AAD, LY and PFR.

6. The assay reagent of claim 5, wherein said physiologically acceptable salt is an acid salt.

7. The assay reagent of claim 6, wherein said acid salt is a trifluoroacetic acid salt.

8. The assay reagent of claim 7, wherein said assay reagent fails to detect a target enzyme which has been inhibited.

9. The assay reagent of claim 8, wherein said target enzyme is selected from cysteine protease, dipeptyl peptidase and calpain.

10. A method of performing an assay for detecting the presence of a enzymatic activity in a metabolically active whole cell to determine the apoptotic stage of the cell comprising:

(a) contacting a test, metabolically active whole cell with an assay reagent, said assay reagent comprising at least one water soluble physiologically acceptable salt having the ability to pass through a cell membrane, said assay compound having an unblocked leaving group selected for cleavage by an enzyme to be analyzed selected from cysteine protease, dipeptyl peptidase and calpain, and a fluorogenic indicator group being selected for its ability to have a non-fluorescent first state when joined to the leaving group, and a fluorescent second state excitable at a wavelength above 450 nm when the unblocked leaving group is cleaved from the indicator group by the enzyme, wherein said fluorogenic indicator group is selected from the group consisting of rhodamine 110, rhodol, fluorescein and derivative thereof;

said assay reagent having a fluorescence less than the auto-fluorescence of a metabolically active cell,

(b) sensing for said fluorescent second state of the indicator group for the test, metabolically active whole cell to produce a test result, and

(c) determining an apoptotic stage of said metabolically active whole cell from said test result.

11. The method of claim 10 wherein the enzyme is a caspase enzyme of cysteine proteases.

12. The method of claim 10 wherein the enzyme is a granzyme of cysteine proteases.

13. The method of claim 10 wherein said derivatives of the indicator group are selected from the group consisting of 4'"'"'(5'"'"')aminorhodamine 110, 4'"'"'(5'"'"')carboxyrhodamine 110, 4'"'"'(5'"'"')chlororhodamine 110, 4'"'"'(5'"'"')methylrhodamine 110, 4'"'"'(5'"'"')sulforhodamine 110, 4'"'"'(5'"'"')aminorhodol, 4'"'"'(5'"'"')carboxyrhodol, 4'"'"'(5'"'"')chlororhodol, 4'"'"'(5'"'"')methylrhodol, 4'"'"'(5'"'"')sulforhodol, 4'"'"'(5'"'"')aminofluorescein, 4'"'"'(5'"'"')carboxyfluorescein, 4'"'"'(5'"'"')chlorofluorescein, 4'"'"'(5'"'"')methylfluorescein, and 4'"'"'(5'"'"')sulfofluorescein.

14. The method of claim 10 wherein said unblocked leaving group has an amino acid sequence selected from YVAD, DEVD, VEID, AAD, LY and PFR.

15. The method of claim 14 wherein said physiologically acceptable salt is an acid salt.

16. The method of claim 15 wherein said acid salt is a trifluoroacetic acid salt.

17. The method of claim 16 wherein said assay reagent fails to detect a target enzyme which has been inhibited.

18. The method of claim 17 wherein said target enzyme is selected from cysteine protease, dipeptyl peptidase and calpain.

19. The method of claim 10 which further comprises differentiating an apoptotic stage of said metabolically active whole cell from necrosis of said metabolically active whole cell.

20. The method of claim 19 wherein said apoptotic stage exhibits a deceased caspase enzyme activity and necrosis exhibits an increased calpain enzyme activity.