Thermostable ligase mediated DNA amplification system for the detection of genetic diseases

• US 6,054,564 A
• Filed: 10/07/1997
• Issued: 04/25/2000
• Est. Priority Date: 05/03/1990
• Status: Expired due to Term

• Current Assignee: California Institute of Technology, Cornell Research Foundation Incorporated (Cornell University)
• Original Assignee: California Institute of Technology, Cornell Research Foundation Incorporated (Cornell University)
• Inventors: Zebala, John, Kaiser, Robert J. Jr., Nickerson, Deborah, Barany, Francis, Hood, Leroy
• Primary Examiner(s): Riley, Jezia
• Application Number:
  US08/946,458
• Time in Patent Office: 931 Days
• Field of Search: 536/22.1, 536/23.1, 536/23.2, 536/23.4, 536/23.5, 435/6, 435/91.1, 435/440, 435/455, 435/471
• US Class Current: 536/22.1
• CPC Class Codes: C12N 15/10 Processes for the isolation, preparation or purification of DNA or RNA chemical preparation of DNA or RNA C07H21/00; preparation of non-structural polynucleotides from microorganisms or with enzymes C12P19/34
• CPC Class Codes: C12N 9/93 Ligases (6)
• CPC Class Codes: C12Q 1/6813 Hybridisation assays
• CPC Class Codes: C12Q 1/6858 Allele-specific amplification
• CPC Class Codes: C12Q 1/6862 Ligase chain reaction [LCR]
• CPC Class Codes: C12Q 2521/501 Ligase
• CPC Class Codes: C12Q 2531/137 Ligase Chain Reaction [LCR]
• CPC Class Codes: C12Q 2561/125 Ligase Detection Reaction [LDR]

Abstract

The present invention relates to the cloning of the gene of a thermophilic DNA ligase, from Thermus aquaticus strain HB8, and the use of this ligase for the detection of specific sequences of nucleotides in a variety of nucleic acid samples, and more particularly in those samples containing a DNA sequence characterized by a difference in the nucleic acid sequence from a standard sequence including single nucleic acid base pair changes, deletions, insertions or translocations.

Claims

1. The cell line AK76 designated as ATCC 55032.

2. A plasmid selected from pDZ1 and designated as ATCC 68307, and pDZ7 and designated as ATCC 68308.

3. An expression vector comprising a DNA sequence encoding for a thermostable ligase selected from the group consisting of (1) Thermus aquaticus HB8 ligase;

(2) a thermostable ligase having at least 6 sequential amino acid residues corresponding to 6 sequential amino acid residues in Thermus aquaticus HB8 ligase; and

(3) a ligase active mutant of Thermus aquaticus HB8 ligase wherein an amino acid residue has been inserted, substituted or deleted in or from the amino acid sequence of the ligase.

4. An isolated nucleic acid molecule encoding a thermostable ligase enzyme, wherein the nucleic acid molecule is selected from the group consisting of:

the nucleic acid encoding the amino acid of SEQ. ID. No. 2;

the nucleic acid sequence set out in SEQ ID No. 1; and

nucleic acid molecules which hybridize under stringent conditions of 2×

SSC, 40% formamide at 40°

C. to the nucleic acid sequence set out in SEQ ID No. 1.

5. The isolated nucleic acid molecule according to claim 4, wherein the isolated nucleic acid molecule has the nucleic acid sequence set out in SEQ ID No. 1.

6. The isolated nucleic acid molecule according to claim 4, wherein the isolated nucleic acid molecule hybridizes under stringent conditions to the nucleic acid sequence set out in SEQ ID No. 1.

7. An expression vector comprising the nucleic acid molecule of claim 4.

8. A host cell comprising the expression vector of claim 7.

9. The host cell according to claim 8, wherein the host cell is a bacterial cell.

10. The host cell according to claim 9, wherein the bacterial cell is Escherichia coli.

11. A host cell comprising the isolated nucleic acid molecule according to claim 4.

12. An isolated nucleic acid molecule comprising a nucleic acid sequence which hybridizes under stringent conditions of 2×

SSC, 40% formamide at 40°

C. to the nucleic acid sequence set out in SEQ. ID. No. 1 and wherein said nucleic acid molecule encodes a ligase enzyme which has a biological property of catalyzing the formation of a phosphodiester bond at the site of a single-stranded break in duplex DNA.

13. The isolated nucleic acid molecule according to claim 12, wherein the thermostable Thermus aquaticus strain HB8 ligase enzyme catalyzes the formation of a phosphodiester bond at the site of a single-stranded break in duplex DNA at temperatures between 50°

C. to 90°

C.

14. The isolated nucleic acid molecule according to claim 12, wherein the thermostable Thermus aquaticus strain HB8 ligase enzyme retains its catalytic activity when subjected to temperatures between 90°

C. to 105°

C.

15. An expression vector comprising the nucleic acid molecule of claim 12.

16. A host cell comprising the expression vector of claim 15.

17. The host cell according to claim 16, wherein the host cell is a bacterial cell.

18. The host cell according to claim 17, wherein the bacterial cell is Escherichia coli.

19. A host cell comprising the isolated nucleic acid molecule according to claim 12.