Nucleic acid amplification process

• US 6,063,603 A
• Filed: 02/26/1996
• Issued: 05/16/2000
• Est. Priority Date: 02/24/1988
• Status: Expired due to Term

• Current Assignee: Akzo Nobel N.V. (Nouryon BV)
• Original Assignee: Akzo Nobel N.V. (Nouryon BV)
• Inventors: Davey, Cheryl, Malek, Lawrence T.
• Primary Examiner(s): Jones, W. Gary
• Assistant Examiner(s): WHISENANT, ETHAN C
• Application Number:
  US08/606,817
• Time in Patent Office: 1,541 Days
• Field of Search: 435/6, 435/91.2, 435/91.21
• US Class Current: 435/91.2
• CPC Class Codes: C12Q 1/6865 Promoter-based amplification, e.g. nucleic acid sequence amplification [NASBA], self-sustained sequence replication [3SR] or transcription-based amplification system [TAS]
• CPC Class Codes: C12Q 1/689 for bacteria
• CPC Class Codes: C12Q 1/703 Viruses associated with AIDS

Abstract

This invention relates to a process for amplifying a specific nucleic acid sequence. The process involves synthesizing single-stranded RNA, single-stranded DNA and double-stranded DNA. The single-stranded RNA is a first template for a first primer, the single-stranded DNA is a second template for a second primer, and the double stranded DNA is a third template for synthesis of a plurality of copies of the first template. A sequence of the first primer or the second primer is complementary to a sequence of the specific nucleic acid and a sequence of the first primer or the second primer is homologous to a sequence of the specific nucleic acid. The amplification process may be used to increase the quantity of the specific nucleic acid sequence to allow detection, or to increase the purity of the specific nucleic acid sequence as a substitute for conventional cloning methodology.

Claims

1. A kit for the isothermal amplification of a specific nucleic acid sequence or its complement according to a process for the amplification of an RNA first template or a second DNA template as defined herein, at a relatively constant temperature and without serial addition of reagents, said process comprising

(A) providing a single reaction medium including a first primer, a second primer having an anti-sense sequence of a promoter, an RNA polymerase that recognizes said promoter, and a DNA polymerase, wherein the ribonuclease activity of said DNA polymerase hydrolyzes the RNA of an RNA-DNA hybrid without hydrolyzing single or double-stranded RNA or DNA;

(B) providing in said single reaction medium said RNA first template, such that the following steps take place;

(1) hybridizing said first primer to said RNA first template,

(2) synthesizing from said DNA polymerase and said RNA first template a DNA second template by extending said first primer and thereby forming an RNA-DNA hybrid intermediate,

(3) hydrolyzing the RNA of said RNA-DNA hybrid intermediate,

(4) hybridizing said second primer to said DNA second template,

(5) synthesizing from said DNA polymerase, said second primer, and said DNA second template a functional promoter recognized by an RNA polymerase,

(6) having said RNA polymerase recognizing said functional promoter and transcribing said DNA second template, thereby providing copies of said RNA first template,

and thereafter

(C) maintaining said conditions for a time sufficient to achieve a desired amplification of said RNA first template or said DNA second template, said kit comprising one or more receptacles containing

(i) a first primer,

(ii) a second primer comprising an anti-sense sequence of a promoter recognized by an RNA polymerase,

(iii) a RNA polymerase that recognizes said promoter,

(iv) a DNA polymerase, wherein the ribonuclease activity of said DNA polymerase hydrolyzes the RNA of an RNA-DNA hybrid without hydrolyzing single or double-stranded RNA or DNA, and

(v) a ribonuclease, with ribonuclease activity that is separate and distinct from the ribonuclease activity of said DNA polymerase wherein said ribonuclease hydrolyzes the RNA of an RNA-DNA hybrid without hydrolyzing single or double-stranded RNA or DNA.

2. The kit of claim 1, wherein said ribonuclease is a bacterial or viral ribonuclease.

3. The kit of claim 1, wherein said ribonuclease is selected from the group consisting of Escherichia coli ribonuclease H, avian myeloblastosis virus polymerase, and Maloney murine leukemia virus polymerase.