Efficient construction of gene targeting vectors

• US 6,090,554 A
• Filed: 10/31/1997
• Issued: 07/18/2000
• Est. Priority Date: 10/31/1997
• Status: Expired due to Term

• Current Assignee: Amgen Inc.
• Original Assignee: Amgen Inc.
• Inventors: Garfinkel, David, Woychik, Richard
• Primary Examiner(s): KETTER, JAMES S
• Application Number:
  US08/963,602
• Time in Patent Office: 991 Days
• Field of Search: 435/6, 435/172.3
• US Class Current: 435/6.16
• CPC Class Codes: A01K 2217/075 inducing loss of function, i.e. knock out
• CPC Class Codes: A01K 2227/105 Murine
• CPC Class Codes: A01K 2267/03 Animal model, e.g. for test or diseases
• CPC Class Codes: A01K 2267/0306 Animal model for genetic diseases
• CPC Class Codes: A01K 67/0276 Knock-out vertebrates
• CPC Class Codes: C12N 15/70 Vectors or expression systems specially adapted for E. coli
• CPC Class Codes: C12N 15/81 for yeasts
• CPC Class Codes: C12N 15/8509 for producing genetically modified animals, e.g. transgenic
• CPC Class Codes: C12N 15/90 Stable introduction of foreign DNA into chromosome
• CPC Class Codes: C12N 15/902 using homologous recombination

Abstract

The present invention is directed to methods for producing or obtaining gene targeting constructs by way of homologous recombination in host cells and to targeting constructs produced by those methods. The invention is also directed to transgenic animals having targeted mutations introduced in to the cells of the animal using the targeting constructs of the invention.

Claims

1. A method for preparing gene targeting vectors in yeast, the method comprising:

a) preparing a shuttle vector comprising a first yeast selectable marker, a bacterial selectable marker and a fragment of genomic DNA containing at least part of a gene to be targeted;

b) preparing a specific engineered fragment (SEF) comprising a marker cassette, the marker cassette comprising a second yeast selectable marker different from the first yeast selectable marker, a selectable marker capable of expression in mammalian embryonic stem cells said marker cassette being flanked on each side by mammalian gene-specific flanking sequences homologous to a portion of the gene to be targeted;

c) transforming yeast cells with the shuttle vector of step a) and with the SEF of step b), and allowing said shuttle vector and said SEF to recombine by homologous recombination;

d) selecting the transformed yeast cells for expression of said first and second yeast selectable markers; and

e) isolating the targeting vector produced by recombination between the shuttle vector and the SEF from the yeast cells selected in step d).

2. The method of claim 1 wherein said gene-specific flanking sequences each comprise at least about 20 nucleotides.

3. The method of claim 2 wherein said gene-specific flanking sequence each comprise from 40 to about 400 nucleotides.

4. The method of claim 1 wherein said fragment of genomic DNA comprises from about one to about 15 kb.

5. The method of claim 1 wherein said fragment of genomic DNA comprises at least from about 0.5 to about 5 kb of DNA on each side of a site in said gene to be targeted.

6. The method of claim 1 wherein said fragment of genomic DNA comprises at least 1 kb of genomic DNA on each side of a site in a gene to be targeted.

7. The method of claim 1 wherein the first yeast selectable marker of step a) is selected from the group consisting of His, Ura3, and Leu2.

8. The method of claim 1 wherein said bacterial selectable marker is selected from the group consisting of tet^r, amp^r, neo^r, chloramphenol resistance.

9. The method of claim 1 wherein the second yeast selectable marker is selected from the group consisting of His, Ura3, and Leu2.

10. The method of claim 1 wherein said mammalian cell selectable marker is selected from the group consisting of neo^r, hygromycin resistant marker and Salmonella his D, and puromycin N-acetyl-transferase.

11. The method of claim 1 wherein said second yeast selectable marker and mammalian cell selectable marker are the same marker.

12. A targeting construct comprising a marker cassette, the marker cassette comprising a first yeast selectable marker and a mammalian cell selectable marker, said cassette being flanked on each side by DNA homologous to a gene to be targeted, said targeting construct further comprising a second yeast selectable marker different from the first yeast selectable marker and a bacterial selectable marker.

13. The targeting construct of claim 12 wherein said DNA homologous to the gene to be targeted comprises from about 1 kb to about 15 kb.

14. The targeting construct of claim 12 wherein said DNA homologous to the gene to be targeted comprises from about 0.5 to about 5 kilobases of DNA on each side of the genomic site to be targeted.

15. The targeting construct of claim 12 or 13 wherein the first yeast selectable marker is selected from the group consisting of His, Ura3, and Leu2.

16. The targeting construct of claim 12, 13 or 14 wherein the second yeast selectable marker is selected from the group consisting of His, Ura3, and Leu2.

17. The targeting vector of claim 12, 13, or 14 wherein the mammalian cell selectable marker is selected from the group consisting of neo^r, hygromicin resistance marker, Salmonella his D, and puromycin N-acetyl transferase.

18. The targeting vector of claim 12, 13, or 14 wherein the bacterial selectable marker is selected from the group consisting of amp^r, neo^r, tet^r, chloramphenol resistance.

25. The targeting vector of claim 15 wherein the mammalian cell selectable marker is selected from the group consisting of neo^r, hygromicin resistance marker, Salmonella his D, and puromycin N-acetyl tansferase.

26. The targeting vector of claim 15 wherein the bacterial selectable marker is selected from the group consisting of amp^r, neo^r, tet^r, chloramphenol resistance.

19. A method of preparing gene targeting constructs in homologous recombination competent cells the method comprising the steps of:

a) preparing a first DNA construct, the first DNA construct comprising all or part of a gene to be targeted;

b) preparing a second DNA construct, the second DNA construct comprising a DNA for insertion into a site in a mammalian gene, said DNA for insertion sequence being flanked on both sides by gene-specific sequences homologous to a portion of the gene to be targeted and

c) introducing into host cells competent to mediate homologous recombination the first and second DNA constructs;

d) allowing the first and second DNA constructs to recombine via their homologous sequences thereby producing a targeting construct; and

e) isolating the targeting construct produced in step d).

20. The method of claim 19 wherein said gene-specific flanking sequences each comprise at least 40 to 400 nucleotides.

21. The method of claim 19 wherein said gene-specific flanking sequences each comprise preferably about 40 nucleotides.

22. The method of claim 19 wherein said fragment of genomic DNA comprises from about 1 kbp to about 15 kbp.

23. The method of claim 19 wherein said fragment of genomic DNA comprises from about 0.5 kbp to about 5 kbp on each side of the site in the gene to be targeted.

24. The method of claim 19 wherein said fragment of genomic DNA comprises at least 1 kbp on each side of a site in said gene to be targeted.