Live attenuated vaccines based on cp45 HPIV-3 strain and method to ensure attenuation in such vaccines
First Claim
1. An enveloped, negative-sense, single-stranded RNA hybrid virus, the hybrid virus having a genome comprising, operatively linked for expression, (i) a nucleic acid sequence which encodes at least one surface antigen of an enveloped target virus of the family Paramyxoviridae, the surface antigen being different from surface antigens of cp45 and (ii) a nucleic acid sequence which encodes a variant HPIV-3 large protein, L, the variant L protein having at least one variation in amino acid sequence relative to the L protein of wild-type HPIV-3 (JS), the variation being a substitution selected from the group consisting of His for Tyr at residue 942 of SEQ ID NO. 1, Phe for Leu at residue 992 of SEQ ID NO. 1, and Ile for Thr at residue 1558 of SEQ ID NO. 1, the variant L protein having polymerase activity.
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Abstract
The present invention is based upon correlation of two attenuating lesions of the cp45 strain to specific genetic defects in the viral genome of cp45. Specifically, it is now understood that a significant level of attenuation of cp45 giving rise to its temperature-sensitive and cold-adapted phenotypes is directly associated with mutation of the large, or L, gene of cp45 relative to the corresponding gene in the wild-type JS strain. Moreover, it is further understood that a second attenuating lesion exits independent of the temperature-sensitive lesion, and is directly associated with mutation of the hemagglutinin-neuraminidase gene, or HN gene, of cp45 relative to the corresponding gene in the wild-type HPIV-3 (JS) strain. The correlation of these two attenuating lesions of cp45 to specific genes enables several practical applications. It is now possible to create vaccines directed at other wild-type HPIV-3 viruses and, additionally, vaccines directed at target viruses other than HPIV-3 using genetic engineering techniques. For example, the mutated L and/or HN genes of cp45 can be incorporated into the viral genome of a target virus. Alternatively, the genes of the target virus which encode its surface antigens can be incorporated into the viral genome of cp45. Moreover, it is possible to determine whether an HPIV-3 strain or a hybrid virus strain made by the methods disclosed herein is attenuated by confirming the presence or absence of mutations in its L and/or HN genes.
9 Citations
66 Claims
- 1. An enveloped, negative-sense, single-stranded RNA hybrid virus, the hybrid virus having a genome comprising, operatively linked for expression, (i) a nucleic acid sequence which encodes at least one surface antigen of an enveloped target virus of the family Paramyxoviridae, the surface antigen being different from surface antigens of cp45 and (ii) a nucleic acid sequence which encodes a variant HPIV-3 large protein, L, the variant L protein having at least one variation in amino acid sequence relative to the L protein of wild-type HPIV-3 (JS), the variation being a substitution selected from the group consisting of His for Tyr at residue 942 of SEQ ID NO. 1, Phe for Leu at residue 992 of SEQ ID NO. 1, and Ile for Thr at residue 1558 of SEQ ID NO. 1, the variant L protein having polymerase activity.
- 39. A plasmid vector comprising a positive or negative sense genome which includes, operatively linked for expression, (i) a nucleic acid sequence which encodes the surface antigens of a target virus of the family Paramyxoviridae, the surface antigens being different from surface antigens of the HPIV-3 strain designated as cp45, and (ii) a nucleic acid sequence which encodes a variant large protein, L, having an amino acid sequence which has at least a 90% sequence identity with the amino acid sequence of the wild-type HPIV-3 (JS) L protein and which has at least one variation in amino acid sequence relative to the L protein of wild-type HPIV-3 (JS), the variation being a substitution selected from the group consisting of His for Tyr at residue 942 of SEQ ID NO. 1, Phe for Leu at residue 992 of SEQ ID NO. 1, and Ile for Thr at residue 1558 of SEQ ID NO. 1, the variant L protein having an RNA-polymerase activity which is less than the polymerase activity normally associated with the target virus at a temperature of about 39°
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45. An enveloped, negative-sense, single-stranded RNA hybrid virus, the hybrid virus having a genome comprising, operatively linked for expression, a nucleic acid sequence which encodes (i) at least one surface antigen of a target virus of the family Paramyxoviridae, said target virus being one which depends upon a protein exhibiting neuraminidase activity to complete its replication cycle, the surface antigen being different from surface antigens of the HPIV-3 strain designated as cp45;
- and (ii) one protein which exhibits neuraminidase activity, said protein comprising a portion of the cp45 HN protein, the encoded portion having a neuraminidase activity and including an amino acid sequence which is the same as the amino acid sequence from residue 160 to residue 385 of SEQ. ID. NO. 3.
- View Dependent Claims (46, 47, 48, 49, 50)
- 51. An enveloped, negative-sense, single-stranded RNA hybrid virus having a genome comprising, operatively linked for expression, (i) a nucleic acid sequence which is the same as the nucleic acid sequence of the 3'"'"' leader region of a wild-type HPIV-3 target virus or which encodes at least one protein selected from the group consisting of the matrix protein, M, of the target virus, the fusion protein, F, of the target virus and the large protein, L, of the target virus, and (ii) a nucleic acid sequence which encodes a variant hemagglutinin-neuraminidase protein, HN, having an amino acid sequence which has at least a 90% sequence identity with the amino acid sequence of the HN protein of wild-type HPIV-3 (JS) virus, which has at least one variation in amino acid sequence relative to the HN protein of the target virus and which has at least one variation in amino acid sequence relative to the HN protein of the HPIV-3 (JS) virus, the variation relative to the HN protein of HPIV-3 (JS) being at residue 384 of SEQ ID NO. 3, the variant HN protein having neuraminidase activity which is less than the neuraminidase activity normally associated with the HN protein of the target virus.
- 61. A method for determining whether a HPIV-3 virus or a cp45-hybrid virus is attenuated, the method comprising confirming the presence of at least one variation in the genome of the virus relative to the genome of wild-type HPIV-3, the variation being selected from the group consisting of those which would cause a variation in the amino acid corresponding to position 942, 992, or 1558 of SEQ ID NO. 1 or position 384 of SEQ ID NO. 3.
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63. A method for determining whether a HPIV-3 or a cp45-hybrid virus has a temperature sensitive phenotype, the method comprising
obtaining a sample of a HPIV-3 virus or a cp45-hybrid virus, performing a first plaque assay at a non-permissive temperature on the virus as a control assay; -
transfecting a mammalian host cell with a plasmid vector that expresses L protein of wild-type HPIV-3 (JS); infecting the host cell with the virus; incubating to yield a complemented virus; performing a second plaque assay at a non-permissive temperature on the complemented viral sample; and comparing the second plaque assay to the control assay to confirm the presence of the temperature sensitive phenotype. - View Dependent Claims (64, 65)
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Specification