Reagents including a carrier and fluorescent labeling complexes with large stokes shift formed by coupling together cyanine and other fluorochromes capable of resonance energy transfer

• US 6,130,094 A
• Filed: 09/11/1998
• Issued: 10/10/2000
• Est. Priority Date: 06/07/1995
• Status: Expired due to Term

• Current Assignee: Carnegie Mellon University
• Original Assignee: Carnegie Mellon University
• Inventors: Mujumdar, Ratnakar B., Waggoner, Alan S., Mujumdar, Swati R.
• Primary Examiner(s): Higel, Floyd D.
• Application Number:
  US09/152,009
• Time in Patent Office: 760 Days
• Field of Search: 544/212, 544/328, 546/272, 546/273, 548/427, 548/455, 435/6, 435/7.1, 436/800, 436/63, 536/22.1, 536/23.1, 935/77, 252/700, 252/183.11
• US Class Current: 436/63
• CPC Class Codes: C09B 11/22 containing OH groups bound to an aryl nucleus and their ethers and esters
• CPC Class Codes: C09B 23/06 three >CH- groups, e.g. carbocyanines
• CPC Class Codes: C09B 23/083 five >CH- groups
• CPC Class Codes: C09B 23/086 more than five >CH- groups
• CPC Class Codes: C09B 23/10 The polymethine chain containing an even number of >CH- groups styryl dyes C09B23/14, C09B23/14 takes precedence
• CPC Class Codes: G01N 33/533 with fluorescent label
• CPC Class Codes: G01N 33/582 with fluorescent label
• CPC Class Codes: Y10S 436/80 Fluorescent dyes, e.g. rhodamine

Abstract

The present invention provides low molecular weight fluorescent labeling complexes with large wavelength shifts between absorption of one dye in the complex and emission from another dye in the complex. These complexes can be used, for example, for multiparameter fluorescence cell analysis using a single excitation wavelength. The low molecular weight of the complex permits materials labeled with the complex to penetrate cell structures for use as probes. The labeling complexes are synthesized by covalently attaching through linkers at least one cyanine fluorochrome to another low molecular weight fluorochrome to form energy donor-acceptor complexes. Resonance energy transfer from an excited donor to fluorescent acceptor provides wavelength shifts up to 300 nm. The fluorescent labeling complexes preferably contain reactive groups for the labeling of functional groups on target compounds, such as derivatized oxy and deoxy polynucleic acids, antibodies, enzymes, proteins and other materials. The complexes may also contain functional groups permitting covalent reaction with materials containing reactive groups.

Claims

1. A reagent comprising:

a fluorescent water soluble labeling complex consisting of;

(i) one or more low molecular weight first fluorochromes, each having first absorption and emission spectra, covalently attached through a linker to one or more low molecular weight second fluorochromes, each having second absorption and emission spectra, said linker being between 2 to 20 bond lengths and wherein at least one of said first and second fluorochromes is a cyanine dye and wherein the wavelength of the emission maximum of at least one said second fluorochrome is longer than the wavelength of the emission maximum of at least one said first fluorochrome and a portion of the absorption spectrum of at least one said second fluorochrome overlaps a portion of the emission spectrum of at least one said first fluorochrome for transfer of energy absorbed by said first fluorochrome upon excitation with light to said second fluorochrome;

(ii) at least one bonding group capable of forming a covalent bond with a carrier material; and

,

(iii) at least one water solubilizing constituent attached to said complex, said water solubilizing constituent being unreactive with said at least one bonding group,

having covalently bonded thereto a carrier material having a group that reacts with said bonding group of said complex.

2. The reagent recited in claim 1 wherein said carrier material has a functional group selected from the group consisting of amino, sulfhydryl, carbonyl, hydroxyl and carboxyl and said carrier material is selected from the group consisting of antibody, protein, nucleotide derivatized to contain one of an amino, sulfhydryl, carbonyl, carboxyl, or hydroxyl groups, and oxy or deoxy polynucleic acids derivatized to contain one of an amino, sulfhydryl, carbonyl, carboxyl or hydroxyl groups.

3. The reagent recited in claim 1 wherein said first fluorochrome has an extinction coefficient greater than 20,000 Liters per mole centimeter.

4. The reagent recited in claim 1 wherein said second fluorochrome has a fluorescence quantum yield greater than or equal to 0.05.

5. The reagent recited in claim 1 wherein said water solubilizing constituents are selected from the group consisting of amide, sulfonate, sulfate, phosphate, quaternary ammonium, hydroxyl and phosphonate.

6. The reagent recited in claim 1 wherein one of said bonding group or said carrier group is a reactive group selected from the group consisting of succinimidyl ester, isothiocyanate, isocyanate, iodoacetamide, acid halide, carbodiimide, substituted hydroxylamines, substituted hydrazine, dichlorotriazine, maleimide, sulfonyl halide, alkylimidoester, arylimidoester and phosphonamidite and the other is a functional group reactive with said reactive group.

7. The reagent recited in claim 1 wherein there is one second fluorochrome and there are a plurality of said first fluorochromes each covalently attached through a linker to said second fluorochrome and each being capable, upon excitation with light, of transferring energy to said second fluorochrome.

8. The reagent recited in claim 1 wherein there is one first fluorochrome and there are a plurality of said second fluorochromes each covalently attached through a linker to said first fluorochrome and each being capable of accepting energy from said first fluorochrome when said first fluorochrome is excited by light.

9. The reagent recited in claim 1 further comprising:

a third fluorochrome having third absorption and emission spectra covalently attached to said second fluorochrome;

the wavelength of the emission maximum of said third fluorochrome being loner than the wavelength of the emission maximum of said second fluorochrome, and a portion of the emission spectrum of said second fluorochrome overlapping a portion of the absorption spectrum of said third fluorochrome for transferring energy absorbed from said first fluorochrome by said second fluorochrome to said third fluorochrome.

10. The reagent recited in claim 1 wherein the combined molecular weight of said first and second fluorochromes of said complex is within the range of about 500 to 10,000 Daltons.

11. The reagent recited in claim 1 wherein said carrier material is selected from the group consisting of a polymer particle, proteins, cells, nucleotides and nucleic acids.