Production of antibodies using Cre-mediated site-specific recombination

• US 6,130,364 A
• Filed: 03/29/1995
• Issued: 10/10/2000
• Est. Priority Date: 03/29/1995
• Status: Expired due to Term

• Current Assignee: Amgen Fremont Inc. (Amgen Inc.), Japan Tobacco Inc.
• Original Assignee: Abgenix Inc (Amgen Inc.), Japan Tobacco Inc.
• Inventors: Jakobovits, Aya, Zsebo, Krisztina M.
• Primary Examiner(s): Hauda, Karen M.
• Assistant Examiner(s): WEHBE, ANNE MARIE SABRINA
• Application Number:
  US08/412,826
• Time in Patent Office: 2,022 Days
• Field of Search: 435/172.3, 435/240.1, 435/69.1, 435/254, 435/320.1, 435/91.1, 435/192.3, 435/462, 435/463, 435/326, 536/23.2, 536/23.1, 800/13, 800/18, 800/21, 800/4, 800/6
• US Class Current: 800/6
• CPC Class Codes: A01K 2207/15 Humanized animals
• CPC Class Codes: A01K 2217/00 Genetically modified animals
• CPC Class Codes: A01K 2217/05 Animals comprising random inserted nucleic acids (transgenic)
• CPC Class Codes: A01K 2217/075 inducing loss of function, i.e. knock out
• CPC Class Codes: A01K 2227/105 Murine
• CPC Class Codes: A01K 2267/01 Animal expressing industrially exogenous proteins
• CPC Class Codes: A01K 2267/03 Animal model, e.g. for test or diseases
• CPC Class Codes: C07K 16/00 Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies antibodies with enzymatic activity, e.g. abzymes C12N9/0002
• CPC Class Codes: C12N 15/8509 for producing genetically modified animals, e.g. transgenic
• CPC Class Codes: C12N 15/90 Stable introduction of foreign DNA into chromosome
• CPC Class Codes: C12N 2800/30 Vector systems comprising sequences for excision in presence of a recombinase, e.g. loxP or FRT

Abstract

A method to produce a cell expressing an antibody from a genomic sequence of the cell comprising a modified immunoglobulin locus using Cre-mediated site-specific recombination is disclosed. The method involves first transfecting an antibody-producing cell with a homology-targeting vector comprising a lox site and a targeting sequence homologous to a first DNA sequence adjacent to the region of the immunoglobulin loci of the genomic sequence which is to be converted to a modified region, so the first lox site is inserted into the genomic sequence via site-specific homologous recombination. Then the cell is transfected with a lox-targeting vector comprising a second lox site suitable for Cre-mediated recombination with the integrated lox site and a modifying sequence to convert the region of the immunoglobulin loci to the modified region. This conversion is performed by interacting the lox sites with Cre in vivo, so that the modifying sequence inserts into the genomic sequence via Cre-mediated site-specific recombination of the lox sites. Also disclosed are a form of the method used to produce a cell expressing a modified antibody molecule using Cre-mediated site-specific recombination, and antibody-producing cells obtainable by the disclosed methods. Class-switching modifications of human antibodies produced in murine hybridoma cells are exemplified.

Claims

1. A method to produce an antibody-producing cell comprising a genomically-integrated modified immunoglobulin locus, the method comprising the steps of:

(a) transfecting a murine embryonic stem (ES) cell in vitro with a first homology-targeting vector comprising;

(i) a first lox site, and

(ii) a targeting sequence homologous to a first DNA sequence 5'"'"' of a region of a genomically-integrated immunoglobulin locus,

so that said first lox site is inserted 5'"'"' of said region of said immunoglobulin locus via homologous recombination with genomic DNA without disrupting expression of or substantially altering an amino acid sequence of an antibody chain encoded by the immunoglobulin locus;

(b) generating a transgenic mouse from the ES cell;

(c) immunizing the transgenic mouse with an antigen;

(d) isolating an antibody-producing cell from the immunized transgenic mouse;

(e) transfecting said antibody-producing cell in vitro with a lox-targeting vector comprising;

(i) a second lox site suitable for Cre-mediated recombination with said first lox site, and

(ii) a modifying sequence;

(f) interacting the lox sites with Cre, so that said modifying sequence inserts into said immunoglobulin sequence via Cre-mediated site-specific recombination of said lox sites, thereby forming a modified immunoglobulin locus; and

(g) selecting a transfectant comprising said modified immunoglobulin locus, which transfectant produces a functional antibody molecule.

2. The method of claim 1 wherein said lox-targeting vector further comprises a selectable marker gene operably linked to control regions such that said marker gene is expressed in said cell,

so that in step (f), on interacting the lox sites with Cre, said marker gene and said modifying sequence insert into said immunoglobulin locus via Cre-mediated site-specific recombination of said lox sites, and

in step (g), said selecting for a transfectant comprises selecting for a transfectant expressing said marker gene.

3. The method of claim 1 further comprising

an additional step before step (e) which additional step comprises transfecting said cell in vitro with a second homology-targeting vector comprising:

(i) a third lox site suitable for Cre-mediated recombination with said first and second lox sites,

(ii) a first selectable marker gene operably linked to control regions such that said first marker gene is expressed in said cell, and

(iii) a targeting sequence homologous to a second DNA sequence adjacent said region of the immunoglobulin locus, said region being flanked by said first and second DNA sequences, so that said third lox site and said first marker gene are inserted into said immunoglobulin locus via site-specific homologous recombination with genomic DNA; and

wherein in step (e), said lox-targeting vector further comprises a second selectable marker gene operably linked to control regions such that said second marker gene is expressed in said cell,

so that in step (f), on interacting the lox sites with Cre, said second marker gene and said modifying sequence insert into said immunoglobulin locus via Cre-mediated site-specific recombination of said lox sites; and

in step (g), said selecting for a transfectant comprises selecting for a transfectant expressing said second marker gene.

4. The method of claim 3 wherein

in step (f), on interacting the lox sites with Cre, after said modifying sequence and second marker gene insert into said immunoglobulin locus, said first marker gene and said region are deleted by Cre-mediated site-specific recombination;

and

in step (g) said selecting for a transfectant further comprises selecting for a transfectant not expressing said first marker gene.

5. The method of claim 1 wherein said modifying sequence comprises a regulatory nucleotide sequence which replaces all or a portion of a regulatory sequence of the immunoglobulin locus to provide modified expression of said immunoglobulin locus.

6. The method of claim 1 wherein said modifying sequence comprises a nucleotide sequence that encodes a translation product to replace all or a portion of either a constant region or a variable region of the immunoglobulin locus to form an immunoglobulin locus encoding A modified antibody molecule.

7. The method of claim 1 wherein said region of the immunoglobulin locus comprises a constant region gene and said modifying sequence comprises a nucleotide sequence that encodes a translation product to replace all or a portion of the constant region.

8. The method of claim 7 in which said constant region gene comprises a heavy chain gene.

9. The method of claim 7 wherein said constant region gene is a murine constant region gene and said modifying sequence comprises a human constant region gene or portion thereof.

10. The method of claim 7 wherein said constant region gene is a human constant region gene and said modifying sequence comprises a different human constant region gene or portion thereof.

11. The method of claim 7 wherein said constant region gene is a human C.sub.μ

gene and said modifying sequence comprises a human C.sub.γ

constant region gene.

12. The method of claim 7 wherein said modifying sequence comprises a sequence encoding an enzyme, toxin, hormone, growth factor or linker.

13. The method of claim 1 wherein said antibody-producing cell produces a human antibody.

14. An antibody-producing cell expressing a genomic sequence encoding an antibody, the genomic sequence comprising a modified immunoglobulin locus which comprises a lox site 5'"'"' of a modified region in said locus wherein said cell is obtainable by the method of claim 1.

15. A method to produce an antibody from an antibody-producing cell expressing a genomic sequence encoding an antibody, the genomic sequence comprising a modified immunoglobulin locus wherein said cell is obtainable by the method of claim 1, which method comprises:

(a) incubating said cell under conditions such that said cell produces said antibody, and

(b) recovering said antibody produced by said cell.

16. A method to produce an antibody-producing cell expressing a genomic sequence encoding an antibody, the genomic sequence comprising a lox site adjacent or integrated within a region of an immunoglobulin locus which method comprises:

(a) transfecting a murine embryonic stem (ES) cell in vitro with a first homology-targeting vector comprising;

(i) a first lox site; and

(ii) a targeting sequence homologous to a first DNA sequence 5'"'"' of a region of a genomically-integrated immunoglobulin locus,

wherein said first lox site is inserted 5'"'"' of said region of said immunoglobulin locus via homologous recombination with genomic DNA without disrupting expression of or substantially altering an amino acid sequence of an antibody chain polypeptide encoded by the immunoglobulin locus; and

(b) generating a transgenic mouse from the ES cell;

(c) immunizing the transgenic mouse with an antigen;

(d) isolating an antibody-producing cell from the immunized transgenic mouse, wherein the antibody-producing cell comprises said lox site inserted into said genomic DNA 5'"'"' of said region.

17. An antibody-producing cell comprising a genomic sequence encoding an antibody molecule, the genomic sequence comprising a lox site 5'"'"' of a region of an immunoglobulin locus, wherein said cell is obtainable by the method of claim 16.

18. A method to modify a region of a genomically-integrated immunoglobulin locus of an antibody producing cell, which method comprises:

(a) transfecting the cell isolated in step (d) of claim 16 with a lox-targeting vector comprising;

(i) a second lox site suitable for Cre-mediated recombination with said first lox site, and

(ii) a modifying sequence;

(b) interacting the lox sites with Cre, so that said modifying sequence inserts into said immunoglobulin locus via Cre-mediated site-specific recombination of said lox sites, thereby forming a modified immunoglobulin locus; and

(c) selecting a transfectant comprising said modified immunoglobulin locus, which transfectant encodes a functional antibody molecule.

19. An antibody-producing cell comprising a genomically-integrated modified immunoglobulin locus which comprises a lox site 5'"'"' of a modified region in said locus, wherein said cell is obtainable by the method of claim 18.

20. A method to produce an antibody from a cell comprising a genomically-integrated modified immunoglobulin locus wherein said cell is obtainable by the method of claim 18, which method comprises:

(a) incubating said cell under conditions such that said cell expresses a genomically-integrated modified immunoglobulin locus, thereby producing an antibody, and

(b) recovering said antibody produced by said cell.

21. A method to produce an antibody-producing hybridoma, which hybridoma expresses an antibody chain encoded by a modified immunoglobulin locus, the method comprising the steps of:

immunizing a transgenic mouse with an antigen, wherein the mouse is transgenic for a sequence encoding a first lox site, which lox site is present within an immunoglobulin sequence selected from;

(i) a heavy chain polypeptide encoding sequence, wherein the first lox site is positioned 5'"'"' of a sequence encoding a heavy chain constant region and 3'"'"' of a sequence encoding a heavy chain variable region; and

(ii) a light chain polypeptide encoding sequence, wherein the first lox site is positioned 5'"'"' of a sequence encoding a light chain constant region and 3'"'"' of a sequence encoding a light chain variable region;

wherein the first lox site is positioned within the immunoglobulin sequence such that the encoded polypeptide retains sufficient functionality for production of a functional antibody;

producing hybridomas from antibody-producing cells of the immunized transgenic mouse;

identifying a hybridoma producing an antibody having a desired antigen-binding characteristic;

transfecting the hybridoma in vitro with a lox-targeting vector comprising;

(i) a second lox site suitable for Cre-mediated recombination with said first lox site, and

(ii) a modifying sequence;

interacting the lox sites with Cre, so that said modifying sequence inserts into the immunoglobulin sequence via Cre-mediated site-specific recombination at the lox sites, wherein a sequence positioned 3'"'"' of the first lox site is displaced by the modifying sequence, producing a modified immunoglobulin locus; and

selecting a transfectant having a modified immunoglobulin locus and producing an antibody chain polypeptide from the modified immunoglobulin locus;

wherein a hybridoma expressing an antibody chain encoded by a modified immunoglobulin locus is produced.

22. The method of claim 21, wherein the immunoglobulin sequence having the first lox site is a heavy chain polypeptide-encoding sequence and the modifying sequence is a heavy chain constant region.

23. The method of claim 21, wherein the immunoglobulin sequence having the first lox site is a light chain polypeptide-encoding sequence and the modifying sequence is a light chain constant region.

24. A method to produce an antibody comprising an antibody heavy chain encoded by a modified heavy chain polypeptide-encoding sequence, the method comprising the steps of:

immunizing a transgenic mouse with an antigen, wherein the mouse is transgenic for a sequence encoding a first lox site, which first lox site is present within a heavy chain polypeptide encoding sequence and is positioned 5'"'"' of a sequence encoding a heavy chain constant region and 3'"'"' of a sequence encoding a heavy chain variable region, said positioning being such that the heavy chain polypeptide retains sufficient functionality for production of a functional antibody;

producing hybridomas from antibody-producing cells of the immunized transgenic mouse;

identifying a hybridoma producing an antibody having a desired antigen-binding characteristic;

transfecting the hybridoma in vitro with a lox-targeting vector comprising;

(i) a second lox site suitable for Cre-mediated recombination with said first lox site, and

(ii) a modifying sequence;

interacting the lox sites with Cre, so that said modifying sequence inserts into the heavy chain polypeptide-encoding sequence via Cre-mediated site-specific recombination at the lox sites, wherein all or a portion of the sequence encoding the heavy chain constant region 3'"'"' of the first lox site is displaced by the modifying sequence, producing a modified heavy chain polypeptide-encoding sequence; and

selecting a transfectant having a modified heavy chain polypeptide-encoding sequence and expressing a modified heavy chain polypeptide;

wherein a hybridoma expressing an antibody comprising a modified heavy chain polypeptide is produced.

25. The method of claim 24, wherein the modifying sequence is a heavy chain constant region.

27. The method of claim 24, wherein the modifying sequence is a light chain constant region.

26. A method to produce an antibody comprising an antibody light chain encoded by a modified light chain polypeptide-encoding sequence, the method comprising the steps of:

immunizing a transgenic mouse with an antigen, wherein the mouse is transgenic for a sequence encoding a first lox site, which first lox site is present within a light chain polypeptide encoding sequence and is positioned 5'"'"' of a sequence encoding a light chain constant region and 3'"'"' of a sequence encoding a light chain variable region, said positioning being such that the light chain polypeptide retains sufficient functionality for production of a functional antibody;

producing hybridomas from antibody-producing cells of the immunized transgenic mouse;

identifying a hybridoma producing an antibody having a desired antigen-binding characteristic;

transfecting the hybridoma in vitro with a lox-targeting vector comprising;

(i) a second lox site suitable for Cre-mediated recombination with said first lox site, and

(ii) a modifying sequence positioned adjacent the second lox site;

interacting the lox sites with Cre, so that said modifying sequence inserts into the light chain polypeptide-encoding sequence via Cre-mediated site-specific recombination at the lox sites, wherein all or a portion of the sequence encoding the light chain constant region 3°

of the first lox site is displaced by the modifying sequence, producing a modified light chain polypeptide-encoding sequence; and

selecting a transfectant having a modified light chain polypeptide-encoding sequence and expressing a modified light chain polypeptide;

wherein a hybridoma expressing an antibody comprising a modified light chain polypeptide is produced.