Methods for hard-tagging an encoded synthetic library
First Claim
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1. A method for tagging a solid support having multiple copies of a single target compound covalently attached thereto in order to determine the structure of the target compound attached to the support wherein the compound is prepared in situ on the support by sequentially conducting n reactions on said support wherein n is an integer greater than 1 which method comprises:
- a) conducting a first reaction on the solid support wherein the first reaction and/or the step in the chemical synthesis where said reaction is conducted is encoded by a tag coupled to the support, immediately before or after coupling of each monomer, wherein said tag is an amine or mixture of amines selected from a plurality of amines of formula I
wherein R and R′
are independently hydrocarbyl groups of from 1 to 30 carbon atoms which define a unique amine tag used to identify the reaction conducted in target compound synthesis and/or the point in time where said reaction is conducted;
R4 and R5 are either hydrogen or are joined together with atoms in between to form a piperidine ring; and
Pg is selected from the group consisting of hydrogen, an amine tag of formula I above bound to the amino nitrogen through the carbonyl functionality of formula I, and a compatible protecting group provided that the compatible protecting group is orthogonal to any and all protecting groups employed in compound synthesis, provided that each tag combination employed to encode a single reaction is different from and distinguishable over all other tag combinations used to encode other variations used in that reaction and still further provided that the amine compounds used to encode a first reaction are different from the amine compounds used to encode the other encrypted reactions so as provide a binary or higher coding system; and
b) repeating procedure a) above until all n steps for target compound synthesis on the support are completed.
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Abstract
Disclosed are chemical encryption methods for determining the structure of compounds formed in situ on solid supports by the use of specific amines tags which, after compound synthesis, can be deencrypted to provide the structure of the compound found on the support.
100 Citations
19 Claims
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1. A method for tagging a solid support having multiple copies of a single target compound covalently attached thereto in order to determine the structure of the target compound attached to the support wherein the compound is prepared in situ on the support by sequentially conducting n reactions on said support wherein n is an integer greater than 1 which method comprises:
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a) conducting a first reaction on the solid support wherein the first reaction and/or the step in the chemical synthesis where said reaction is conducted is encoded by a tag coupled to the support, immediately before or after coupling of each monomer, wherein said tag is an amine or mixture of amines selected from a plurality of amines of formula I
wherein R and R′
are independently hydrocarbyl groups of from 1 to 30 carbon atoms which define a unique amine tag used to identify the reaction conducted in target compound synthesis and/or the point in time where said reaction is conducted;
R4 and R5 are either hydrogen or are joined together with atoms in between to form a piperidine ring; and
Pg is selected from the group consisting of hydrogen, an amine tag of formula I above bound to the amino nitrogen through the carbonyl functionality of formula I, and a compatible protecting group provided that the compatible protecting group is orthogonal to any and all protecting groups employed in compound synthesis, provided that each tag combination employed to encode a single reaction is different from and distinguishable over all other tag combinations used to encode other variations used in that reaction and still further provided that the amine compounds used to encode a first reaction are different from the amine compounds used to encode the other encrypted reactions so as provide a binary or higher coding system; and
b) repeating procedure a) above until all n steps for target compound synthesis on the support are completed. - View Dependent Claims (2, 3, 4, 5, 6, 7, 8, 9, 10)
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11. A method for tagging a solid support having multiple copies of a single target compound covalently attached thereto in order to determine the structure of the target compound attached to the support wherein the compound is prepared in situ on the support by sequentially conducting n reactions on said support wherein n is an integer greater than 1 which method comprises:
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a) conducting a first reaction on the solid support wherein the first reaction and/or the step in the chemical synthesis where said reaction is conducted is encoded by a tag coupled to the support, immediately before or after coupling of each monomer, wherein said tag is an amine or mixture of amines selected from a plurality of amines of formula I or formula II
wherein R and R′
are independently hydrocarbyl groups of from 1 to 30 carbon atoms which define a unique amine tag used to identify the reaction conducted in target compound synthesis and/or the point in time where said reaction is conducted;
R4 and R5 are either hydrogen or are joined together with atoms in between to form a piperidine ring; and
Pg is selected from the group consisting of hydrogen, an amine tag of formula I or II above bound to the amino nitrogen through the carbonyl functionality of formula I or II, and a compatible protecting group, provided that each tag combination employed to encode a single reaction is different from and distinguishable over all other tag combinations used to encode other variations used in that reaction and still further provided that the amine compounds used to encode a first reaction are different from the amine compounds used to encode the other encrypted reactions so as provide a binary or higher coding system; and
b) repeating procedure a) above until all n steps for target compound synthesis on the support are completed. - View Dependent Claims (12, 13, 14, 15, 16, 17, 18, 19)
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Specification
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Current AssigneeAffymax Incorporated
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Original AssigneeAffymax Incorporated
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InventorsHolmes, Christopher, MacLean, Derek, Ni, Zhi-Jie, Shah, Nikhil, Fitch, William, Gallop, Mark A., Gordon, Eric
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Primary Examiner(s)Ponnaluri, Padmashri
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Application NumberUS09/442,427Time in Patent Office874 DaysField of Search436/518, 436/501, 436/528, 436/85, 435/7.1, 435/DIG.1, 435/DIG.2, 435/DIG.14, 435/DIG.15, 435/DIG.16, 435/DIG.17, 435/DIG.18, 435/DIG.21, 435/DIG.49, 536/23.1US Class Current506/4CPC Class CodesB01J 2219/00572 Chemical meansC40B 70/00 Tags or labels specially ad...G01N 33/54306 Solid-phase reaction mechan...G01N 33/545 Synthetic resinG01N 33/68 involving proteins, peptide...
