Method and multiple reservoir apparatus for fabrication of biomolecular arrays

• US 6,461,812 B2
• Filed: 09/09/1998
• Issued: 10/08/2002
• Est. Priority Date: 09/09/1998
• Status: Expired due to Fees

• Current Assignee: Agilent Technologies, Inc.
• Original Assignee: Agilent Technologies, Inc.
• Inventors: Barth, Phillip W., Schleifer, Arthur, Caren, Michael P., Schembri, Carol T., McAllister, William H.
• Primary Examiner(s): Jones, W. Gary
• Assistant Examiner(s): FORMAN, BETTY J
• Application Number:
  US09/150,507
• Publication Number:
  US 20010051334A1
• Time in Patent Office: 1,490 Days
• Field of Search: 422/100, 422/55, 422/56, 422/58, 422/64, 422/68.1, 435/6, 435/283.1, 435/286.2, 435/287.2, 435/288.2, 435/288.5, 347/20, 436/518
• US Class Current: 435/6.1
• CPC Class Codes: B01J 19/0046 Sequential or parallel reactions, e.g. for the synthesis of polypeptides or polynucleotides; Apparatus and devices for combinatorial chemistry or for making molecular arrays synthesis methods per se C40B50/00
• CPC Class Codes: B01J 2219/00378 Piezoelectric or ink jet dispensers
• CPC Class Codes: B01J 2219/00527 Sheets
• CPC Class Codes: B01J 2219/00585 Parallel processes
• CPC Class Codes: B01J 2219/00596 Solid-phase processes
• CPC Class Codes: B01J 2219/00605 the compounds being directly bound or immobilised to solid supports
• CPC Class Codes: B01J 2219/00612 the surface being inorganic
• CPC Class Codes: B01J 2219/00659 Two-dimensional arrays
• CPC Class Codes: B01J 2219/00722 Nucleotides
• CPC Class Codes: B01L 3/0268 using pulse dispensing or spraying, eg. inkjet type, piezo actuated ejection of droplets from capillaries
• CPC Class Codes: B41J 2/14145 Structure of the manifold
• CPC Class Codes: B41J 2002/14387 Front shooter
• CPC Class Codes: C12Q 1/6837 using probe arrays or probe chips C12Q1/6874 takes precedence
• CPC Class Codes: C40B 40/06 Libraries containing nucleotides or polynucleotides, or derivatives thereof
• CPC Class Codes: C40B 60/14 for creating libraries

Abstract

Apparatus for delivering a plurality of different biological materials onto discrete locations on a receiving surface, as for example to fabricate an array of different biological material, includes a plurality of orifices in an orifice member, at least six delivery chambers each in fluid conducting relationship with at least one of the orifices, a plurality of reservoirs each in fluid communication with at least one of the delivery chambers, means associated with each orifice for propelling fluid through the associated orifice from the delivery chamber that is in fluid conducting relationship with the orifice, and a vent for commonly venting at least two of the reservoirs. In some embodiments the chambers and reservoirs are loaded with fluids containing selected biomolecules by drawing the selected fluids into the chambers through the orifices; in other embodiments the fluids are introduced into the reservoirs. Also, methods for depositing biological materials onto a surface, as for example to fabricate a biomolecular array, employ the apparatus.

Claims

1. Apparatus for delivering a plurality of different biological materials onto discrete locations on a receiving surface, the apparatus comprising:

a plurality of orifices in a one-piece orifice member;

a plurality of delivery chambers each in fluid conducting relationship with at least one of said orifices;

at least six reservoirs each in fluid conducting relationship with at least one of said delivery chambers;

means associated with each orifice for propelling fluid through the associated orifice from the delivery chamber that is in fluid conducting relationship with the orifice; and

a vent for commonly venting the at least six reservoirs;

the apparatus further comprising means for contacting at least one of said orifices with a fluid outside said delivery chamber whereby said fluid will flow from outside the orifice, through the orifice and into the delivery chamber.

2. The apparatus of claim 1 wherein the combined capacity of each said reservoir and delivery chamber in fluid conducting relationship therewith is less than 100 microliters.

3. The apparatus of claim 2 wherein the combined capacity of each said reservoir and delivery chamber in fluid conducting relationship therewith is less than 10 microliters.

4. The apparatus of claim 2 wherein the combined capacity of each said reservoir and delivery chamber in fluid conducting relationship therewith is less than 1 microliter.

5. The apparatus of claim 1, comprising at least sixteen said reservoirs.

6. The apparatus of claim 1, comprising at least fifty said reservoirs.

7. The apparatus of claim 1, comprising at least one hundred said reservoirs.

8. The apparatus of claim 1, further comprising means operatively connected with said vent for commonly changing the pressure within said at least six reservoirs.

9. The apparatus of claim 8 wherein said pressure changing means comprises means for reducing pressure within said at least six reservoir.

10. The apparatus of claim 9, whereby operating said pressure reducing means results in drawing the fluid through said orifice into said delivery chamber.

11. The apparatus of claim 8 wherein said pressure changing means comprises means for increasing pressure within said at least six reservoirs.

12. The apparatus of claim 11 wherein said pressure increasing means comprises means for introducing a fluid into said at least six reservoirs, whereby operating said pressure increasing means results in expelling fluid out from said at least one delivery chamber in fluid communication with said reservoir by way or said orifices.

13. The apparatus of claim 1 wherein said propelling means comprises a source of heat.

14. The apparatus of claim 13 wherein said source of heat comprises an electrical heater, said heater being operative when activated to heat fluid within the delivery chamber to a degree sufficient to propel a quantity of fluid out from the delivery chamber through the associated orifice.

15. The apparatus of claim 1 wherein said means for propelling comprises a piezoelectric device.

16. The apparatus of claim 1 wherein said orifice member is a planar orifice plate having an inner surface and an exit surface, said orifices providing openings through said plate from said inner surface to said outer surface.

17. The apparatus of claim 1, comprising a plurality of said orifice members.

18. A method for delivering a plurality of different biological materials onto discrete locations on a receiving surface, the method comprising:

loading a fluid medium containing one of said different biological materials through the orifice and into one of said delivery chambers of the apparatus of claim 10, each said means for propelling when activated propelling a quantity of said fluid medium along a delivery path away from said orifice member;

positioning the orifices, delivery chambers, reservoirs and means for propelling of the apparatus of claim 10 in relation to the receiving surface whereby said orifice member is proximate the receiving surface and the delivery path for said fluid medium intersects said receiving surface at a locus of intersection;

moving the orifices, delivery chambers, reservoirs and means for propelling of the apparatus of claim 10 in relation to the receiving surface so that locus of intersection moves on said receiving surface;

activating the means for propelling associated with said orifice when the locus of intersection is at a first location on said surface onto which delivery of the selected said fluid medium is desired; and

repeating the moving and activating steps to deliver the plurality of different biological materials onto discrete locations on the surface.

19. The method of claim 18 wherein said fluid medium loading step results in each said delivery chamber being loaded with a fluid containing a different biological material.

20. The method of claim 18 wherein said plurality of different biological materials comprises a plurality of nucleic acids.

21. The method of claim 20 wherein said plurality of nucleic acids comprises a plurality of nucleic acids selected from the group consisting of DNAs, RNAs and synthetic derivatives thereof.

22. A method according to claim 18 wherein the fluid medium loading comprises contacting at least one of said orifices with a fluid outside said delivery chamber.

23. A method according to claim 22 wherein the fluid medium loading comprises applying a reduced pressure through the vent to commonly reduce the pressure within at least six reservoirs.

24. A method according to claim 22 wherein the orifice member is a planar orifice plate having an inner surface and an exit surface, said orifices providing openings through said plate from said inner surface to said outer surface.

25. A method according to claim 23 wherein the orifice member is a planar orifice plate having an inner surface and an exit surface, said orifices providing openings through said plate from said inner surface to said outer surface.

26. Apparatus for delivering a plurality of different biological materials onto discrete locations on a receiving surface, the apparatus comprising:

a plurality of orifices in a one-piece orifice member;

a plurality of delivery chambers each in fluid conducting relationship with at least one of said orifices;

at least six reservoirs each in fluid conducting relationship with at least one of said delivery chambers;

means associated with each orifice for propelling fluid through the associated orifice from the delivery chamber that is in fluid conducting relationship with the orifice; and

a vent for commonly venting the at least six reservoirs;

wherein each of the reservoirs is in fluid conducting relationship with a plurality of delivery chambers.

27. The apparatus of claim 26 wherein the combined capacity of each said reservoir and delivery chamber in fluid conducting relationship therewith is less than 100 microliters.

28. The apparatus of claim 27, comprising at least sixteen said reservoirs.

29. The apparatus of claim 26, further comprising means for contacting at least one of said orifices with a fluid outside said delivery chamber whereby said fluid will flow from outside the orifice, through the orifice and into the delivery chamber.

30. The apparatus of claim 26, further comprising means operatively connected with said vent for commonly changing the pressure within said at least six reservoirs;

and wherein said pressure changing means comprises means for reducing pressure within said at least six reservoirs.

31. The apparatus of claim 30, further comprising means for contacting at least one of said orifices with a fluid outside said delivery chamber, whereby operating said pressure reducing means results in drawing the fluid through said orifice into said delivery chamber.

32. A method for delivering a plurality of different biological materials onto discrete locations on a receiving surface, the method comprising:

loading a fluid medium containing one of said different biological materials through the orifice and into one of said delivery chambers of the apparatus of claim 30, each said means for propelling when activated propelling a quantity of said fluid medium along a delivery path away from said orifice member;

positioning the apparatus of claim 30 in relation to the receiving surface whereby said orifice member is proximate the receiving surface and the delivery path for said fluid medium intersects said receiving surface at a locus of intersection;

moving the apparatus of claim 30 in relation to the receiving surface whereby a locus of intersection moves on said receiving surface;

activating the means for propelling associated with said orifice when the locus of intersection is at a first location on said surface onto which delivery of said fluid medium is desired; and

repeating the moving and activating steps to deliver the plurality of different biological materials onto discrete locations on the surface.

33. Apparatus for delivering a plurality of different biological materials onto discrete locations on a receiving surface, the apparatus comprising:

a plurality of orifices in an orifice member;

a plurality of delivery chambers each in fluid conducting relationship with at least one of said orifices;

at least six reservoirs each in fluid conducting relationship with a plurality of said delivery chambers; and

means associated with each orifice for propelling fluid through the associated orifice from the delivery chamber that is in fluid conducting relationship with the orifice;

wherein the combined capacity of each said reservoir and delivery chamber in fluid conducting relationship therewith is less than 100 microliters.

34. The apparatus of claim 33 wherein the combined capacity of each said reservoir and the delivery chambers in fluid conducting relationship therewith is less than 10 microliters.

35. The apparatus of claim 33, further comprising:

a vent for commonly venting the at least six reservoirs;

means operatively connected with said vent for commonly changing the pressure within said at least six reservoirs.

36. The apparatus of claim 35, comprising at least sixteen said reservoirs.

37. The apparatus of claim 35 wherein said pressure changing means comprises means for reducing pressure within said at least six reservoirs.

38. The apparatus of claim 37, further comprising means for contacting at least one of said orifices with a fluid outside said delivery chamber, whereby operating said pressure reducing means results in drawing the fluid through said orifice into said delivery chamber.

39. The apparatus of claim 33, further comprising means for contacting at least one of said orifices with a fluid outside said delivery chamber whereby said fluid will flow from outside the orifice, through the orifice and into the delivery chamber.

40. A method for delivering a plurality of different biological materials onto discrete locations on a receiving surface, using an apparatus having:

a plurality of orifices in an orifice member;

a plurality of delivery chambers each in fluid conducting relationship with at least one of said orifices;

a plurality of reservoirs each in fluid conducting relationship with a plurality of said delivery chambers; and

means associated with each orifice for propelling fluid through the associated orifice from the delivery chamber that is in fluid conducting relationship with the orifice;

the method comprising;

loading a fluid medium containing one of said different biological materials into one of said delivery chambers of the apparatus by contacting said orifices with a fluid outside said delivery chamber and permitting said fluid outside to flow through said orifices into said delivery chambers, each said means for propelling when activated propelling a quantity of said fluid medium along a delivery path away from said orifice member;

positioning the apparatus in relation to the receiving surface whereby said orifice member is proximate the receiving surface and the delivery path for said fluid medium intersects said receiving surface at a locus of intersection;

moving the apparatus in relation to the receiving surface so that locus of intersection moves on said receiving surface;

activating the means for propelling associated with said orifice when the locus of intersection is at a first location on said surface onto which delivery of said fluid medium is desired; and

repeating the moving and activating steps to deliver the plurality of different biological materials onto discrete locations on the surface.

41. The method of claim 40 wherein said plurality of different biological materials comprises a plurality of nucleic acids.

42. A method according to claim 40 wherein the orifice member is a planar orifice plate having an inner surface and an exit surface, said orifices providing openings through said plate from said inner surface to said outer surface.

43. A head for delivering a plurality of different biological materials onto discrete locations on a receiving surface, the apparatus comprising:

a plurality of orifices in an orifice member;

a plurality of delivery chambers each in fluid conducting relationship with at least one of said orifices;

at least six reservoirs each in fluid conducting relationship with at least one of said delivery chambers;

means associated with each orifice for propelling fluid through the associated orifice from the delivery chamber that is in fluid conducting relationship with the orifice; and

a vent for commonly venting the at least six reservoirs, wherein the common vent moves together with the remainder of the head.

44. The head of claim 43, further comprising means for contacting at least one of said orifices with a fluid outside said delivery chamber whereby said fluid will flow from outside the orifice, through the orifice and into the delivery chamber.

45. The head according to claim 43 wherein said means for propelling comprises a source of heat.

46. The head of claim 43 wherein said means for propelling comprises a piezoelectric device.

47. The head of claim 43 wherein the orifice member is a one-piece orifice member.

48. A method for loading a head of claim 47 with a plurality of different biological fluids, comprising contacting said orifices with fluids outside said delivery chamber and permitting said fluids outside to flow through said orifices into said delivery chambers.

49. The head of claim 43 wherein the vent is in a common cover for the at least six reservoirs.

50. The head of claim 49 wherein the combined capacity of each said reservoir and delivery chamber in fluid conducting relationship therewith is less than 100 microliters.

51. The apparatus of claim 50, comprising at least sixteen said reservoirs.

52. The apparatus of claim 49 wherein the combined capacity of each said reservoir and delivery chamber in fluid conducting relationship therewith is less than 10 microliters.

53. The apparatus of claim 52, comprising at least fifty said reservoirs.

54. The apparatus of claim 52, comprising at least one hundred said reservoirs.

55. The apparatus of claim 49 wherein the combined capacity of each said reservoir and delivery chamber in fluid conducting relationship therewith is less than 1 microliter.

56. A method for loading a head or claim 43 with a plurality of different biological fluids, comprising contacting said orifices with a fluid outside said delivery chamber and permitting said fluid outside to flow through said orifices into said delivery chambers.

57. A method of claim 56 additionally comprising reducing the pressure through the common vent to assist the flow of fluid through said orifices.

58. A method according to claim 56 wherein the orifice member is a planar orifice plate having an inner surface and an exit surface, said orifices providing openings through said plate from said inner surface to said outer surface.