Process for obtaining DNA, RNA, peptides, polypeptides, or protein, by recombinant DNA technique

• US 6,492,107 B1
• Filed: 06/05/1995
• Issued: 12/10/2002
• Est. Priority Date: 11/20/1986
• Status: Expired due to Term

• Current Assignee: Santa Fe Institute, Stuart Kauffman
• Original Assignee: Stuart Kauffman
• Inventors: Kauffman, Stuart Alan, Ballivet, Marc
• Primary Examiner(s): ZITOMER, STEPHANIE W
• Application Number:
  US08/464,569
• Time in Patent Office: 2,745 Days
• Field of Search: 435/6, 435/91.2, 435/7--, 435/69.1, 435/91.1, 435/194, 435/243, 435/320.1, 435/455, 435/471, 536/24-- 2, 536/23.1, 530/300, 530/350
• US Class Current: 435/6.14
• CPC Class Codes: C12N 15/1093 General methods of preparing gene libraries, not provided for in other subgroups

Abstract

The present invention is directed to a process for the production of a peptide, polypeptide, or protein having a predetermined property. In accordance with one embodiment, the process begins by producing by way of synthetic polynucleotide coupling, stochastically generated polynucleotide sequences. A library of expression vectors containing such stochastically generated polynucleotide sequences is formed. Next, host cells containing the vectors are cultured so as to produce peptides, polypeptides, or proteins encoded by the stochastically generated polynucleotide sequences. Screening or selection is carried out on such host cells to identify a peptide, polypeptide, or protein produced by the host cells which has the predetermined property. The stochastically generated polynucleotide sequence which encodes the identified peptide, polypeptide, or protein is then isolated and used to produce the peptide, polypeptide, or protein having the predetermined property.

Claims

1. A process for the production of a peptide, polypeptide, or protein having a predetermined property, comprising the steps of:

producing stochastically generated polynucleotide sequences;

forming a library of expression vectors comprising said stochastically generated polynucleotide sequences;

culturing host cells comprising said library of expression vectors to produce said peptides, polypeptides, or proteins encoded by the stochastically generated polynucleotide. sequences;

screening or selecting said host cells, to thereby identify a host cell comprising an expression vector encoding a peptide, polypeptide, or protein having the predetermined property;

isolating a stochastically generated polynucleotide sequence from said expression vector which encodes the identified peptide, polypeptide, or protein;

using the isolated stochastically generated polynucleotide sequence to produce the peptide, polypeptide, or protein having the predetermined property.

2. A process for the production of a peptide, polypeptide, or protein having a predetermined property, comprising the steps of:

producing a population of stochastic polynucleotide sequences comprising stochastic synthetic polynucleotide sequences;

introducing the population of stochastic polynucleotide sequences thus obtained into host cells to produce transformed host cells;

cultivating the transformed host cells comprising said population of stochastic polynucleotide sequences to produce peptides, polypeptides, or proteins encoded by stochastic polynucleotide sequences;

screening or selecting a cell from said transformed host cells thereby identifying a cell producing the peptide, polypeptide, or protein having the predetermined property;

isolating the cell so identified, and growing the isolated cell under conditions to produce the peptide, polypeptide, or protein having the predetermined property.

3. A process for the production of a DNA having a selectable predetermined property, comprising the steps of:

producing DNA comprising stochastically generated polynucleotide sequences;

forming a library of expression vectors comprising said stochastically generated polynucleotide sequences;

culturing host cells comprising expression vectors from said library of expression vectors to express said DNA, and

screening or selecting said host cells to identify a host cell comprising an expression vector expressing said DNA having the selectable predetermined property.

4. The process according to claim 3, wherein said selectable predetermined property comprises the capacity of said DNA to selectively bind to a compound.

5. A process for the production of a DNA having a selectable predetermined property, comprising the steps of:

producing a population of DNA comprising stochastic synthetic polynucleotide sequences;

introducing said population of DNA thus obtained into host cells to produce transformed host cells;

cultivating the transformed host cells;

screening or selecting the transformed host cells to identify a cell producing a DNA having said selectable predetermined property;

isolating the cell producing said DNA having said selectable predetermined property, and

growing the isolated cell under conditions to produce the DNA having the selectable predetermined property.

6. A process for the production of a population of DNA comprising stochastic polynucleotide sequences, comprising the steps of:

linearizing an expression vector;

reacting said linearized expression vector with terminal transferase enzyme in the presence of predetermined ratios of deoxynucleotide-triphosphates of guanine, cytosine, thymidine, and adenine to form a stochastic polynucleotide sequence at each 3′

extremity of said linearized vector;

hybridizing said stochastic polynucleotide sequence at a 3′

extremity of said linearized vector, and synthesizing a second strand from said 3′

ends of said hybridized vector.

7. A process for the production of a library of DNA molecules comprising stochastic sequences of polynucleotides, comprising the steps of:

producing stochastic sequences of polynucleotides;

ligating said stochastic sequences of polynucleotides into expression vectors;

transforming competent cells with said ligated expression vectors; and

amplifying said transformed cells.

8. A process for the production of an RNA molecule having a selectable predetermined property, comprising the steps of:

producing a population of DNA molecules comprising stochastically generated polynucleotide sequences;

forming a library of expression vectors comprising said stochastically generated polynucleotide sequences;

culturing host cells comprising said expression vectors forming said library to express RNA from said DNA;

screening or selecting said host cells to identify a RNA having the selectable predetermined property.

10. The process according to claim 8 or 9, wherein said selectable predetermined property comprises the capacity of said RNA molecule to selectively bind a compound.

9. A process for the production of an RNA molecule having a selectable predetermined property, comprising the steps of:

producing a population of DNA molecules comprising stochastic synthetic polynucleotide sequences, introducing said population of DNA molecules into host cells to produce transformed host cells;

cultivating said transformed host cells to produce a population of RNA comprising stochastic polynucleotide sequences;

screening or selecting said transformed host cells to identify a cell expressing an RNA molecule having the selectable predetermined property;

isolating the identified cell;

growing said isolated cell, and

producing said RNA molecule having the selectable predetermined property.

11. A process for the production of a library of RNA molecules comprising stochastic sequences of polynucleotide, comprising the steps of:

producing DNA comprising stochastic polynucleotide sequences;

ligating said DNA comprising stochastic polynucleotide sequences into expression vectors capable of expressing said DNA to produce said RNA;

transforming competent cells with said ligated expression vectors;

amplifying said transformed cells, and

expressing said DNA to produce said library of molecule RNA.

12. A process for the production of a population of DNA comprising stochastic polynucleotide sequences, comprising the steps of:

linearizing an expression vector;

reacting said linearized expression vector with terminal transferase enzyme in the presence of stochastic ratios of deoxynucleotide-triphosphates of guanine, cytosine, thymidine, and adenine to form a stochastic polynucleotide sequence at each 3′

extremity of said linearized vector;

hybridizing said stochastic polynucleotide sequence at a 3′

extremity of said linearized vector; and

synthesizing a second strand from said 3′

ends of said hybridized vector.