Fluorochromes labelling complexes with large stokes shift formed by coupling together cyanine and other fluorochromes capable of resonance energy transfer

• US 6,545,164 B1
• Filed: 10/07/1999
• Issued: 04/08/2003
• Est. Priority Date: 06/07/1995
• Status: Expired due to Term

• Current Assignee: Carnegie Mellon University
• Original Assignee: Carnegie Mellon University
• Inventors: Mujumdar, Ratnakar B., Waggoner, Alan S., Mujumdar, Swati R.
• Primary Examiner(s): POWERS, FIONA
• Application Number:
  US09/413,998
• Time in Patent Office: 1,279 Days
• Field of Search: 548/427, 544/212, 544/328, 544/455, 546/272, 546/273, 436/6, 435/6, 536/800
• US Class Current: 548/427
• CPC Class Codes: C09B 11/22 containing OH groups bound to an aryl nucleus and their ethers and esters
• CPC Class Codes: C09B 23/06 three >CH- groups, e.g. carbocyanines
• CPC Class Codes: C09B 23/083 five >CH- groups
• CPC Class Codes: C09B 23/086 more than five >CH- groups
• CPC Class Codes: C09B 23/10 The polymethine chain containing an even number of >CH- groups styryl dyes C09B23/14, C09B23/14 takes precedence
• CPC Class Codes: G01N 33/533 with fluorescent label
• CPC Class Codes: G01N 33/582 with fluorescent label
• CPC Class Codes: Y10S 436/80 Fluorescent dyes, e.g. rhodamine

Abstract

The present invention provides low molecular weight fluorescent labeling complexes with large wavelength shifts between absorption of one dye in the complex and emission from another dye in the complex. These complexes can be used, for example, for multiparameter fluorescence cell analysis using a single excitation wavelength. The low molecular weight of the complex permits materials labeled with the complex to penetrate cell structures for use as probes. The labeling complexes are synthesized by covalently attaching through linkers at least one cyanine fluorochrome to another low molecular weight fluorochrome to form energy donor-acceptor complexes. Resonance energy transfer from an excited donor to fluorescent acceptor provides wavelength shifts up to 300 nm. The fluorescent labeling complexes preferably contain reactive groups for the labeling of functional groups on target compounds, such as derivatized oxy and deoxy polynucleic acids, antibodies, enzymes, proteins and other materials. The complexes may also contain functional groups permitting covalent reaction with materials containing reactive groups.

Claims

1. A set of fluorescent labelling complexes each of said complexes comprising:

i) a first fluorochrome having first absorption and emission spectra;

ii) a second fluorochrome having second absorption and emission spectra, the wavelength of the emission maximum of said second fluorochrome being longer than the wavelength of the emission maximum of said first fluorochrome, and a portion of the absorption spectrum of said second fluorochrome overlapping a portion of the emission spectrum of said first fluorochrome;

iii) at least one linker group of between 2 and 20 bond lengths for covalently attaching said first and second fluorochromes for transfer of resonance energy between said first and second fluorochromes;

iv) at least one bonding group capable of forming a covalent bond with a target compound;

wherein at least one of said first or second fluorochromes in each of said complexes is a cyanine dye and wherein the combined molecular weight of said first and second fluorochromes and said linker group in each of said complexes is less than 20,000 Daltons.

2. A set of fluorescent labelling complexes according to claim 1 wherein each of said complexes further comprises water solubilizing constituents attached thereto, said water solubilizing constituents being unreactive with said bonging group of said complex.

3. A set of fluorescent labelling complexes according to claim 2 wherein said water solubilizing constituents are selected from the group consisting of amide, sulphonate, sulphate, phosphate, quaternary ammonium, hydroxyl, guanidinium and phosphonate.

4. A set of fluorescent labelling complexes according to claim 1 wherein said bonding group in each of said complexes is a reactive group selected from the group consisting of succinimidyl ester, isothiocyanate, isocyanate, haloacetamide, dichlorotriazine, maleimide, sulphonyl halide, alkylimidoester, arylimidoester, substituted hydrazine, substituted hydroxylamine, carbodiimide, acyl halide, anhydride, phosphoramidite, acrylate and acrylamide.

5. A set of fluorescent labelling complexes according to claim 1 wherein the combined molecular weight of the said first and second fluorochromes and said linker group in each of said complexes is within the range of 500 to 10,000 Daltons.

6. A set of fluorescent labelling complexes according to claim 1 wherein one or more of said fluorescent labelling complexes of said set of fluorescent labeling complexes further comprises a third fluorochrome having third absorption and emission spectra covalently attached to said second fluorochrome;

the wavelength of the emission maximum of said third fluorochrome being longer than the wavelength of the emission maximum of said second fluorochrome and a portion of the emission spectrum of said second fluorochrome overlapping a portion of the absorption spectrum of said third fluorochrome such that excitation of said first fluorochrome produces fluorescence from said third fluorochrome.

7. A set of fluorescent labelling complexes according to claim 6 wherein one or more of said fluorescent labelling complexes further comprise water solubilizing constituents attached thereto, said water solubilizing constituents being unreactive with said bonding groups on each of said complexes.

8. A set of fluorescent labelling complexes according to claim 6 wherein said first fluorochromes are selected from the group consisting of monomethine rigidized cyanine dyes, a trimethine cyanine dye, fluorescein, pyrene trisulphonate, bispyrromethine boron difluoride dyes and said second and third fluorochromes are polymethine cyanine dyes.

21. A carrier material labelled with one of a set of fluorescent labelling complexes according to claim 1 in which the reactive group of said complex is covalently bound to a functional group on the carrier material.

23. A method comprising incubating one complex of a set of fluorescent labelling complexes according to claim 1 with one of a carrier material or a target compound under conditions suitable for the formation of a covalent linkage between said one complex and one of said carrier material or target compound.

25. A method according to claim 23 wherein said carrier material or target compound is selected from the group consisting of antibodies, antigens, proteins, carbohydrates, lipids, nucleotides that contain one of amino, hydroxyl, sulphydryl, carboxyl or carbonyl groups, and oxy or deoxy polynucleic acids that contain one of amino, hydroxyl, phosphate, thiophosphoryl, sulphydryl, carboxyl or carbonyl groups, cells, polymer particles, or glass beads.

27. A set of reagents comprising the fluorescent labelling complexes according to claim 1, each complex absorbing at the same wavelength and emitting at significantly different emission wavelengths, each complex being linked through a covalent bond to a carrier material selected from the group consisting of antibodies, antigens, proteins, carbohydrates, lipids, nucleotides that contain one of amino, hydroxyl, sulphydryl, carboxyl or carbonyl groups, and oxy or deoxy polynucleic acids that contain one of amino, hydroxyl, phosphate, thiophosphoryl, sulphydryl, carboxyl or carbonyl groups, cells, polymer particles, or glass beads.

9. A set of fluorescent labelling complexes each of said complexes including:

i) a first fluorochrome having first absorption and emission spectra;

ii) a second fluorochrome having second absorption and emission spectra, the wavelength of the emission maximum of said second fluorochrome being longer than the wavelength of the emission maximum of said first fluorochrome, and a portion of the absorption spectrum of said second fluorochrome overlapping a portion of the emission spectrum of said first fluorochrome, the first and second fluorochromes being selected from the cyanine dyes, fluoresceins, rhodamines, pyrene trisulphonates and derivatives of the bispyrromethine boron difluoride dyes;

iii) at least one rigid linker group having between 2 and 20 bond lengths for covalently attaching said first and second fluorochromes for transfer of resonance energy between said first and second fluorochromes;

iv) at least one bonding group capable of forming a covalent bond with a target compound wherein the bonding group is a reactive group for reacting with a functional group on the target compound;

wherein the combined molecular weight of said first and second fluorochromes and said linker group in each of said complexes is less than 20,000 Daltons, and wherein at least two complexes of said set absorbs at the same wavelength and emits at significantly different emission wavelengths.

10. A set of fluorescent labelling complexes according to claim 9 wherein each of said complexes further includes water solubilizing constituents attached thereto, said water solubilizing constituents being unreactive with said bonding group.

11. A set of fluorescent labelling complexes according to claim 10 wherein said water solubilizing constituents are selected from the group consisting of amide, sulphonate, sulphate, phosphate, quaternary ammonium, hydroxyl, guanidinium and phosphonate.

12. A set of fluorescent labelling complexes according to claim 9 wherein said bonding group in each of said complexes is a reactive group selected from the group consisting of succinimidyl ester, isothiocyanate, isocyanate, haloacetamide, dichlorotriazine, maleimide, sulphonyl halide, alkylimidoester, arylimidoester, substituted hydrazine, substituted hydroxylamine, carbodiimide, acyl halide, anhydride, phosphoramidite, acrylate and acrylamide.

13. A set of fluorescent labelling complexes according to claim 9 wherein the combined molecular weight of the said first and second fluorochromes and said linker group in each of said complexes is within the range of 500 to 10,000 Daltons.

14. A set of fluorescent labelling complexes according to claim 9 wherein one or more of said fluorescent labelling complexes further includes a third fluorochrome having third absorption and emission spectra covalently attached to said second fluorochrome;

the wavelength of the emission maximum of said third fluorochrome being longer than the wavelength of the emission maximum of said second fluorochrome and a portion of the emission spectrum of said second fluorochrome overlapping a portion of the absorption spectrum of said third fluorochrome such that excitation of said first fluorochrome produces fluorescence from said third fluorochrome.

15. A set of fluorescent labelling complexes according to claim 14 wherein one or more of said fluorescent labelling complexes further include water solubilizing constituents attached thereto, said water solubilizing constituents being unreactive with said bonding groups on each of said complexes.

16. A set of fluorescent labelling complexes according to claim 14 wherein said first fluorochromes are selected from the group consisting of monomethine rigidized cyanine dyes, a trimethine cyanine dye, fluorescein, pyrene trisulphonate, bispyrromethine boron difluoride dyes and said second and third fluorochromes are polymethine cyanine dyes.

22. A carrier material covalently labelled with one of a set of fluorescent labelling complexes according to claim 9.

24. A method comprising incubating one complex of a set of fluorescent labelling complexes according to claim 9 with one of a carrier material or a target compound under conditions suitable for the formation of a covalent linkage between said one complex and one of said carrier material or target compound.

26. A method according to claim 24 wherein said carrier material or target compound is selected from the group consisting of antibodies, antigens, proteins, carbohydrates, lipids, nucleotides that contain one of amino, hydroxyl, sulphydryl, carboxyl or carbonyl groups, and oxy or deoxy polynucleic acids that contain one of amino, hydroxyl, phosphate, thiophosphoryl, sulphydryl, carboxyl or carbonyl groups, cells, polymer particles, or glass beads.

28. A set of reagents comprising fluorescent labelling complexes according to claim 9, each complex absorbing at the same wavelength and emitting at significantly different emission wavelengths, each complex being linked through a covalent bond to a carrier material selected from the group consisting of antibodies, antigens, proteins, carbohydrates, lipids, nucleotides that contain one of amino, hydroxyl, sulphydryl, carboxyl or carbonyl groups, and oxy or deoxy polynucleic acids that contain one of amino, hydroxyl, phosphate, thiophosphoryl, sulphydryl, carboxyl or carbonyl groups, cells, polymer particles, or glass beads.

17. A set of reagents, each reagent of the set comprising:

A) a fluorescent water soluble labelling complex having at least;

i) one or more low molecular weight first fluorochromes, each having first absorption and emission spectra, covalently attached through a linker group of 2 to 20 bond lengths to one or more low molecular weight second fluorochromes, each having second absorption and emission spectra, and wherein the Wavelength of the emission maximum of at least one said second fluorochrome is longer than the wavelength of the emission maximum of at least one said first fluorochrome and a portion of the absorption spectrum of at least one said second fluorochrome overlaps a portion of the emission spectrum of at least one said first fluorochrome for transfer of energy absorbed by said first fluorochrome upon excitation with light to said second fluorochrome;

ii) at least one bonding group capable of forming a covalent bond with a carrier material; and

,

iii) at least one water solubilizing constituent attached to said complex, said water solubilizing constituent being unreactive with said at least one bonding group; and

,

B) a carrier material having one of a functional group or a reactive group that reacts with said bonding group of said complex and is covalently bound thereto;

wherein the bonding group of each said complex is one of a reactive group for reacting with a functional group on said carrier material or a functional group for reacting with a reactive group on said carrier material, and at least one of said first or second fluorochromes is a cyanine dye.

18. A set of reagents according to claim 17 wherein said first fluorochrome is selected from the group consisting of monomethine rigidized cyanine dyes, a trimethine cyanine dye, fluorescein, pyrene trisulphonate, bispyrromethine boron difluoride dyes and said second fluorochrome is a polymethine cyanine dye.

19. A set of reagents according to claim 17 wherein said carrier material has a functional group selected from the group consisting of amino, sulphydryl, carbonyl, hydroxyl and carboxyl, phosphate and thiophosphate and said carrier material is selected from the group consisting of antibody, lipid, protein, carbohydrate, nucleotide derivatized to contain one of an amino, sulphydryl, carbonyl, hydroxyl and carboxyl, phosphate and thiophosphate groups and oxy or deoxy polynucleic acids derivatized to contain one of an amino, sulphydryl, carbonyl, hydroxyl and carboxyl, phosphate and thiophosphate groups.

20. A method of analysis or detection of multiple target compounds comprising:

incubating a first reagent of a set of reagents with a first one of said multiple target materials, each of said reagents of said set of reagents comprising;

A) a fluorescent water soluble labeling complex comprised of;

i) one or more low molecular weight first fluorochromes, each having first absorption and emission spectra, covalently attached through a linker group of 2 to 20 bond lengths to one or more low molecular weight second fluorochromes, each having second absorption and emission spectra, and wherein the wavelength of the emission maximum of at least one said second fluorochrome is longer than the wavelength of the emission maximum of at least one said first fluorochrome and a portion of the absorption spectrum of at least one said second fluorochrome overlaps a portion of the emission spectrum of at least one said first fluorochrome for transfer of energy absorbed by said first fluorochrome upon excitation with light to said second fluorochrome;

ii) at least one reactive group capable of forming a covalent bond with a carrier material; and

,

iii) at least one water solubilizing constituent attached to said complex, said water solubilizing constituent being unreactive with said at least one reactive group;

wherein at least one of said first or second fluorochromes is a cyanine dye;

]

B) a carrier material having a functional group that reacts with said reactive group of said complex and is covalently bound thereto, wherein said functional group is selected from the group consisting of amino, sulphydryl, carbonyl, hydroxyl and carboxyl, phosphate and thiophosphate and said carrier material is selected from the group consisting of antibody, lipid, protein, carbohydrate, nucleotide that contains one of an amino, sulphydryl, carbonyl, hydroxyl and carboxyl, phosphate and thiophosphate groups and oxy or deoxy polynucleic acids that contains one of an amino, sulphydryl, carbonyl, hydroxyl and carboxyl, phosphate and thiophosphate groups;

wherein said fluorescent labeling complexes of each of said set of reagents absorbs at the same wavelength and emits at significantly different emission wavelengths;

wherein the incubating step continues for a period of time sufficient to permit said first reagent to bind to said first target compound to form a reagent labeled-first target compound;

incubating a second reagent of said set of reagents with a second one of said multiple target materials, wherein the incubating step continues for a period of time sufficient to permit said second reagent to bind to said second target compound to form a reagent labeled-second target compound; and

,

measuring and comparing the differences in fluorescent emission between said labeling complexes of said reagent labeled-first target compound and said reagent labeled-second target compound.

29. A method of analysis or detection of multiple target compounds comprising:

incubating a first one of a fluorescent labeling complex of a set of a fluorescent labeling complexes with a first one of multiple target compounds, each complex of said set of fluorescent labeling complexes having at least;

i) a first fluorochrome having first absorption and emission spectra;

ii) a second fluorochrome having second absorption and emission spectra, the wavelength of the emission maximum of said second fluorochrome being longer than the wavelength of the emission maximum of said first fluorochrome, and a portion of the absorption spectrum of said second fluorochrome overlapping a portion of the emission spectrum of said first fluorochrome, the first and second fluorochromes being selected from the cyanine dyes, fluoresceins, rhodamines, pyrene trisulphonates and derivatives of the bispyrromethine boron difluoride dyes;

iii) at least one linker group having between 2 and 20 bond lengths for covalently attaching said first and second fluorochromes for transfer of resonance energy between said first and second fluorochromes;

iv) at least one reactive group capable of forming a covalent bond with a functional group on said target compound;

wherein at least one of said first or second fluorochromes in each of said complexes is a cyanine dye;

wherein the combined molecular weight of said first and second fluorochromes and said linker group in each of said complexes is less than 20,000 Daltons, and wherein at least two complexes of said set absorbs at the same wavelength and emits at significantly different emission wavelengths;

wherein the incubating step continues for a period of time sufficient to permit said reactive group of said first complex to covalently bind to the functional group of said first target compound to form a labeled-first target compound;

incubating a second one of said fluorescent labeling complexes of said set of a fluorescent labeling complexes with a second one of said multiple target compounds, wherein the incubating step continues for a period of time sufficient to permit said reactive group of said second complex to covalently bind to the functional group of said second target compound to form a labeled-second target compound;

removing any unbound fluorescent labeling complexes; and

,

measuring and comparing the differences in fluorescent emission between fluorescent labeling complexes of said labeled-first target compound and said labeled-second target compound.

30. A method of analysis or detection of multiple target compounds comprising:

incubating a first reagent of a set of reagents with a first one of multiple target compounds, each reagent of said set of reagents comprising;

A) a fluorescent water soluble labeling complex comprised of;

i) one or more low molecular weight first fluorochromes, each having first absorption and emission spectra, covalently attached through a linker group of 2 to 20 bond lengths to one or more low molecular weight second fluorochromes, each having second absorption and emission spectra, and wherein the wavelength of the emission maximum of at least one said second fluorochrome is longer than the wavelength of the emission maximum of at least one said first fluorochrome and a portion of the absorption spectrum of at least one said second fluorochrome overlaps a portion of the emission spectrum of at least one said first fluorochrome for transfer of energy absorbed by said first fluorochrome upon excitation with light to said second fluorochrome;

ii) at least one bonding group capable of forming a covalent bond with a carrier material; and

,

iii) at least one water solubilizing constituent attached to said complex, said water solubilizing constituent being unreactive with said at least one bonding group;

wherein the bonding group is one of a reactive group for reacting with a functional group on said carrier material or a functional group for reacting with a reactive group on said carrier, and, at least one of said first or second fluorochromes is a cyanine dye;

B) a carrier material having one of a functional group that reacts with a reactive group on said complex or a reactive group that reacts with a functional group on said complex and is covalently bound thereto;

wherein said fluorescent labeling complexes of each of Said set of reagents absorbs at the same wavelength and emits at significantly different emission wavelengths;

wherein the incubating step continues for a period of time sufficient to permit said first reagent to bind to said first target compound to form a reagent labeled-first target compound;

incubating a second reagent of said set of reagents with a second one of said multiple target compounds, wherein the incubating step continues for a period of time sufficient to permit said second reagent to bind to said second target compound to form a reagent labeled-second target compound;

removing any unbound reagent; and

;

measuring and comparing the differences in fluorescent emission between said fluorescent water soluble labeling complexes of said reagent labeled-first target compound and said reagent labeled-second target compound.

31. A fluorescent labeling complex, comprising:

i) a first fluorochrome having first absorption and emission spectra;

ii) a second fluorochrome having second absorption and emission spectra, the wavelength of the emission maximum of said second fluorochrome being longer than the wavelength of the emission maximum of said first fluorochrome, and a portion of the absorption spectrum of said second fluorochrome overlapping a portion of the emission spectrum of said first fluorochrome;

iii) a rigid linker group of 2 to 20 bond lengths covalently attaching said first fluorochrome and said second fluorochromes selected to transfer resonance energy between said first fluorochrome and said second fluorochrome; and

iv) a bonding group capable of forming a covalent bond with a carrier material,

wherein at least one of said first fluorochrome and said second fluorochrome is a cyanine dye and wherein the combined molecular weight of said first fluorochrome and said second fluorochrome and said linker group in each of said complexes is less than 20,000 Daltons.

32. A fluorescent labeling complex according to claim 31, comprising one of a plurality of said first fluorochrome and a plurality of said second fluorochrome, each of said fluorochromes being attached to said other fluorochromes by a linker group of 2 to 20 bond lengths selected to transfer resonance energy between said first fluorochrome and said second fluorochrome.

33. A fluorescent labeling complex according to claim 31, further comprising a water solubilizing group that is unreactive with said bonding group of said complex.

34. A fluorescent labeling complex according to claim 31, wherein said water solubilizing group is selected from the group consisting of amide, sulphonate, sulphate, phosphate, quaternary ammonium, hydroxyl, guanidinium and phosphonate.

35. A fluorescent labeling complex according to claim 31, wherein said bonding group is a reactive group selected from the group consisting of succinimidyl ester, isothiocyanate, isocyanate, haloacetamide, dichlorotriazine, maleimide, sulphonyl halide, alkylimidoester, arylimidoester, substituted hydrazine, substituted hydroxylamine, carbodiimide, acyl halide, anhydride, phosphoramidite, acrylate and acrylamide.

44. A method of labeling a compound or a carrier material, comprising the step of conjugating a fluorescent labeling complex according to claim 31 with the compound or carrier material under conditions suitable for the formation of a covalent linkage between the complex and the compound or carrier material.

45. A method according to claim 44, wherein the compound or carrier material is selected from the group consisting of an antibody, an antigen, a protein, a carbohydrate, a lipid, a nucleotide, a nucleic acid, a cell, a polymer particle and a glass bead.

36. A set having a plurality of fluorescent labelling complexes, wherein each of said complexes has:

i) a first fluorochrome having first absorption and emission spectra;

ii) a second fluorochrome having second absorption and emission spectra, the wavelength of the emission maximum of said second fluorochrome being longer than the wavelength of the emission maximum of said first fluorochrome, and a portion of the absorption spectrum of said second fluorochrome overlapping a portion of the emission spectrum of said first fluorochrome, the first and second fluorochromes being selected from the cyanine dyes, fluoresceins, rhodamines, pyrene trisulphonates and derivatives of the bispyrromethine boron difluoride dyes;

iii) at least one linker group having between 2 and 20 bond lengths for covalently attaching said first and second fluorochromes for transfer of resonance energy between said first and second fluorochromes;

iv) at least one reactive group capable of forming a covalent bond with a functional group of a target compound, said reactive group being selected from the group consisting of succinimidyl ester, isothiocyanate, isocyanate, haloacetamide, dichlorotriazine, maleimide, sulphonyl halide, alkylimidoester, arylimidoester, substituted hydrazine, substituted hydroxylamine, carbodiimide, acyl halide, anhydride, phosphoramidite, acrylate and acrylamide;

v) an optionally present water solubilizing constituent being unreactive with said reactive group, and being selected from the group consisting of amide, sulphonate, sulphate, phosphate, quaternary ammonium, hydroxyl, guanidinium and phosphonate;

wherein the combined molecular weight of said first and second fluorochromes and said linker group in each of said complexes is less than 20,000 Daltons, and wherein at least two complexes of said set absorbs at the same wavelength and emits at significantly different emission wavelengths.

37. The set of fluorescent labelling complexes according to claim 36 wherein one or more of said fluorescent labelling complexes further comprises a third fluorochrome having third absorption and emission spectra covalently attached to one of said first or said second fluorochrome;

the wavelength of the emission maximum of said third fluorochrome being longer than the wavelength of the emission maximum of said fluorochrome to which it is attached, and a portion of the emission spectrum of said attached fluorochrome overlapping a portion of the absorption spectrum of said third fluorochrome such that excitation of said attached fluorochrome produces fluorescence from said third fluorochrome.

38. The set of fluorescent labelling complexes according to claim 37 wherein said first fluorochromes are selected from the group consisting of monomethine rigidized cyanine dyes, a trimethine cyanine dye, fluorescein, pyrene trisulphonate, bispyrromethine boron difluoride dyes and said second and third fluorochromes are polymethine cyanine dyes.

39. The set of fluorescent labelling complexes according to claim 36, wherein the functional group of said carrier material is selected from the group consisting of amino, sulfhydryl, carbonyl, hydroxyl, phosphate and thiophosphate groups.

40. The set of fluorescent labelling complexes according to claim 36, wherein said first fluorochrome is selected from the group consisting of a monomethine rigidized cyanine dye, a trimethine cyanine dye, a fluorescein, a pyrene trisulphonate, a bispyrromethine boron difluoride dye and said second fluorochrome is a polymethine cyanine dye.

41. The set of fluorescent labelling complexes according to claim 36, wherein said carrier material is selected from the group consisting of an antibody, a lipid, a protein, a carbohydrate, a nucleotide and a nucleic acid.

42. A fluorescent detection and analytical method for detecting a first target material in a sample, comprising the steps of:

a) contacting a first fluorescent labeling complex with a first sample; and

b) detecting labeling of a target material in the first sample with the fluorescent labeling complex,

the first fluorescent labeling complex having at least;

i) a first fluorochrome having first absorption and emission spectra, covalently attached through a linker group of between 2 and 20 bond lengths to a low molecular weight second fluorochrome having second absorption and emission spectra, and wherein the wavelength of the emission maximum of the second fluorochrome is longer than the wavelength of the emission maximum of the first fluorochrome and a portion of the absorption spectrum of the second fluorochrome overlaps a portion of the emission spectrum of the first fluorochrome for transfer of energy absorbed by the first fluorochrome upon excitation with light to the second fluorochrome, wherein at least one of the first fluorochrome and the second fluorochrome is a cyanine dye and wherein said linker group is selected to transfer resonance energy between said first fluorochrome and said second fluorochrome;

ii) a water solubilizing group; and

;

iii) a carrier material covalently bound to portion (i) of said first fluorescent labeling complex and selected from the group consisting of an antibody, a lipid, a protein, a carbohydrate, a nucleotide and a nucleic acid.

43. The fluorescent detection and analytical method according to claim 42, further comprising the steps of:

a) contacting a second fluorescent labeling complex with a second sample to detect a second target material; and

b) detecting labeling of the second target material with the second fluorescent labeling complex,

the second fluorescent labeling complex having at least;

i) a first fluorochrome having first absorption and emission spectra, covalently attached through a linker group to a low molecular weight second fluorochrome having second absorption and emission spectra, wherein the wavelength of the emission maximum of the second fluorochrome is longer than the wavelength of the emission maximum of the first fluorochrome and a portion of the absorption spectrum of the second fluorochrome overlaps a portion of the emission spectrum of the first fluorochrome for transfer of energy absorbed by the first fluorochrome upon excitation with light to the second fluorochrome, wherein at least one of the first fluorochrome and the second fluorochrome is a cyanine dye and said linker group is selected to transfer resonance energy between the first fluorochrome and the second fluorochrome and wherein the second fluorochrome of the second fluorescent labeling complex has an emission spectrum different from the emission spectrum of the second fluorochrome of the first labeling complex;

ii) a water solubilizing group; and

;

iii) a carrier material covalently bound to portion (i) of said second fluorescent labeling complex and selected from the group consisting of an antibody, a lipid, a protein, a carbohydrate, a nucleotide and a nucleic acid.