Microplate thermal shift assay for ligand development using 5-(4″dimethylaminophenyl)-2-(4′-phenyl)oxazole derivative fluorescent dyes

• US 6,569,631 B1
• Filed: 11/12/1999
• Issued: 05/27/2003
• Est. Priority Date: 11/12/1998
• Status: Expired due to Term

• Current Assignee: Life Technologies Corporation (Thermo Fisher Scientific Incorporated)
• Original Assignee: 3-Dimensional Pharmaceuticals, Inc. (Johnson & Johnson)
• Inventors: Springer, Barry A., Salemme, F. Raymond, Petrella, Eugenio C., Pantoliano, Michael W.
• Primary Examiner(s): Ponnaluri, Padmashri
• Application Number:
  US09/438,357
• Time in Patent Office: 1,292 Days
• Field of Search: 435/4, 435/7.1, 435/7.4, 435/DIG.1, 435/DIG.12, 435/DIG.41, 435/DIG.14, 436/501, 436/518, 436/172
• US Class Current: 506/9
• CPC Class Codes: G01N 33/5375 by changing the physical or chemical properties of the medium or immunochemicals, e.g. temperature, density, pH, partitioning
• CPC Class Codes: G01N 33/582 with fluorescent label

Abstract

The present invention provides a method for ranking the affinity of each of a multiplicity of different molecules for a target molecule which is capable of unfolding due to a thermal change. The method comprises (a) contacting the target molecule with one molecule of a multiplicity of different molecules, in the presence of a 5-(4″-dimethylaminopheny-2-(4′-phenyl)oxazole derivative dye, in each of a multiplicity of containers; (b) simultaneously heating the multiplicity of containers; (c) measuring the fluorescence in each of the containers; (d) generating thermal unfolding information for the target molecule as a function of temperature for each of the containers; (e) comparing the thermal unfolding information obtained for each of the containers to the thermal unfolding information for the target molecule in the absence of any of the molecules in the multiplicity of different molecules; and (f) ranking the affinities of each of the molecules according to the difference in the thermal unfolding information between the target molecule in each of the containers and the target molecule in the absence of any of the molecules in the multiplicity of different molecules.

Claims

1. A method for ranking the affinity of each of a multiplicity of different molecules for a target molecule which is capable of unfolding due to a thermal change, said method comprising

(a) contacting the target molecule with one molecule of a multiplicity of different molecules, in the presence of a 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole derivative dye, in each of a multiplicity of containers;

(b) simultaneously heating said multiplicity of containers;

(c) measuring the fluorescence in each of said containers;

(d) generating thermal unfolding information for the target molecule as a function of temperature for each of said containers;

(e) comparing the thermal unfolding information obtained for each of said containers to (i) the thermal unfolding information obtained for each of the other containers, and (ii) the thermal unfolding information obtained for the target molecule in the absence of any of said molecules in said multiplicity of different molecules; and

(f) ranking the affinities of each of said molecules according to the difference in said thermal unfolding information between the target molecule in each of said containers and the target molecule in the absence of any of said molecules in the multiplicity of different molecules.

2. The method of claim 1, wherein said thermal unfolding information is the thermal unfolding T_m.

3. The method of claim 1, wherein said target molecule is a protein.

4. The method of claim 1, wherein said multiplicity of different molecules comprises a combinatorial library.

5. The method of claim 1, wherein said fluorescence in each of said containers is measured simultaneously.

6. The method of claim 1, wherein said heating, said measuring, said generating, and said comparing are performed automatically.

7. The method of claim 6, wherein said contacting is performed automatically.

8. The method of claim 6, wherein said ranking is performed automatically.

9. The method of claim 6, wherein said method is high-throughput.

10. The method of claim 1, wherein said 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole derivative dye is selected from the group consisting of 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole butylsulfonamide, or a salt or ester thereof;

5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole-(2-aminoethyl)sulfonamide, or a salt or ester thereof;

5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole-3-sulfonamidophyenylboronic acid, or a salt or ester thereof;

5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole sulfonic acid, or a salt or ester thereof, 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole sulfonyl hydrazine, 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole-(2-bromoacetamidoethyl)sulfonamide, or a salt or ester thereof;

5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole-2-(3-(2-pyridyldithio) propionamidoethyl)sulfonamide, or a salt or ester thereof;

5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole sulfonyl chloride, or a salt or ester thereof;

5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole-3-sulfonamidopropionic acid, or a salt or ester thereof, 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole carboxylic acid, or a salt or ester thereof, and 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole sulfonate, or a salt or ester thereof.

11. The method of claim 10, wherein said 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole derivative dye is 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole sulfonate, or a salt or ester thereof.

12. The method of claim 11, wherein said 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole derivative dye is 5-(4″

-dimethylaminophenyl)-2-(4′

-phenyl)oxazole sulfonate, sodium salt.