Fluorescent labeling complexes with large stokes shift formed by coupling together cyanine and other fluorochromes capable of resonance energy transfer

• US 6,673,943 B2
• Filed: 11/20/2002
• Issued: 01/06/2004
• Est. Priority Date: 06/07/1995
• Status: Expired due to Term

• Current Assignee: Carnegie Mellon University
• Original Assignee: Carnegie Mellon University
• Inventors: Mujumdar, Ratnakar B., Waggoner, Alan S., Mujumdar, Swati R.
• Primary Examiner(s): POWERS, FIONA
• Application Number:
  US10/300,459
• Publication Number:
  US 20030220502A1
• Time in Patent Office: 412 Days
• Field of Search: 544/212, 544/328, 544/455, 546/272, 546/273, 548/427
• US Class Current: 548/427
• CPC Class Codes: C09B 11/22 containing OH groups bound to an aryl nucleus and their ethers and esters
• CPC Class Codes: C09B 23/06 three >CH- groups, e.g. carbocyanines
• CPC Class Codes: C09B 23/083 five >CH- groups
• CPC Class Codes: C09B 23/086 more than five >CH- groups
• CPC Class Codes: C09B 23/10 The polymethine chain containing an even number of >CH- groups styryl dyes C09B23/14, C09B23/14 takes precedence
• CPC Class Codes: G01N 33/533 with fluorescent label
• CPC Class Codes: G01N 33/582 with fluorescent label
• CPC Class Codes: Y10S 436/80 Fluorescent dyes, e.g. rhodamine

Abstract

The present invention provides low molecular weight fluorescent labeling complexes with large wavelength shifts between absorption of one dye in the complex and emission from another dye in the complex. These complexes can be used, for example, for multiparameter fluorescence cell analysis using a single excitation wavelength. The low molecular weight of the complex permits materials labeled with the complex to penetrate cell structures for use as probes. The labeling complexes are synthesized by covalently attaching through linkers at least one cyanine fluorochrome to another low molecular weight fluorochrome to form energy donor-acceptor complexes. Resonance energy transfer from an excited donor to fluorescent acceptor provides wavelength shifts up to 300 nm. The fluorescent labeling complexes preferably contain reactive groups for the labeling of functional groups on target compounds, such as derivatized oxy and deoxy polynucleic acids, antibodies, enzymes, proteins and other materials. The complexes may also contain functional groups permitting covalent reaction with materials containing reactive groups.

Claims

1. A multichromophore complex comprising:

i) a first fluorochrome having first absorption and emission spectra;

ii) a second fluorochrome having second absorption and emission spectra, the wavelength of the emission maximum of said second fluorochrome being longer than the wavelength of the emission maximum of said first fluorochrome, and a portion of the absorption spectrum of said second fluorochrome overlapping a portion of the emission spectrum of said first fluorochrome;

iii) at least one linker group of between 2 and 20 bond lengths for covalently attaching said first and second fluorochromes for transfer of resonance energy between said first and second fluorochromes;

iv) at least one bonding group capable of forming a covalent bond with a target compound;

wherein said first or second fluorochromes are selected from the group consisting of polymethine cyanine dyes, monomethine rigidized cyanine dyes, fluorescein, pyrene trisulphonate, rhodamine, and bispyrromethine boron difluoride dyes, wherein at least one of said first or second fluorochromes is a cyanine dye, and the combined molecular weight of said first or second fluorochromes and said linker group in each of said complexes is less than 20,000 Daltons.

2. The multichromophore complex according to claim 1 further comprising water solubilizing constituents attached thereto, said water solubilizing constituents being unreactive with said bonding group of said complex.

3. The multichromophore complex according to claim 1 wherein said bonding group is a reactive group selected from the group consisting of succinimidyl ester, isothiocyanate, isocyanate, haloacetamide, dichlorotriazine, maleimide, sulphonyl halide, alkylimidoester, arylimidoester, substituted hydrazine, substituted hydroxylamine, carbodiimide, acyl halide, anhydride, phosphoramidite, acrylate and acrylamide.

4. The multichromophore complex according to claim 1 wherein said first and second fluorochromes are each cyanine dyes.

5. The multichromophore complex according to claim 1 wherein the first fluorochrome is a fluorescein and the second fluorochrome is a cyanine dye.

6. The multichromophore complex according to claim 1 wherein the first fluorochrome is a rhodamine and the second fluorochrome is a cyanine dye.

7. The multichromophore complex according to claim 1 wherein the first fluorochrome is a pentamethine cyanine dye and the second fluorochrome is a heptamethine cyanine dye.

8. The multichromophore complex according to claim 1 wherein the first fluorochrome is a trimethine cyanine dye and the second fluorochrome is a pentamethine cyanine dye.

9. The multichromophore complex according to claim 1 wherein the first fluorochrome is a trimethine cyanine dye and the second fluorochrome is a heptamethine cyanine dye.

10. The multichromophore complex according to claim 1 further comprising a third fluorochrome having third absorption and emission spectra covalently attached to said second fluorochromes;

the wavelength of the emission maximum of said third fluorochrome being longer than the wavelength of the emission maximum of said second fluorochrome and a portion of the emission spectrum of said second fluorochrome overlapping a portion of the absorption spectrum of said third fluorochrome such that excitation of said first fluorochrome produces fluorescence from said third fluorochrome.

11. The multichromophore complex according to claim 10 wherein said first fluorochrome is a flourescein, said second fluorochrome is a trimethine cyanine dye and said third fluorochrome is a heptamethine cyanine dye.

12. The multichromophore complex according to claim 10 wherein said first fluorochrome is a flourescein, said second fluorochrome is a trimethine cyanine dye and said third fluorochrome is a pentamethine cyanine dye.

13. The multichromophore complex according to claim 10 wherein said first fluorochrome is a trimethine cyanine dye, said second fluorochrome is a trimethine cyanine dye and said third fluorochrome is a pentamethine cyanine dye.

14. The multichromophore complex according to claim 1 wherein said linker group is rigid.

15. The multichromophore complex according to claim 1 wherein the transition moments of said first and second fluorochromes are oriented relative to each other in a non-perpendicular direction during the excited state of the donor.

16. The multichromophore complex according to claim 1 wherein the transition moments of said first and second fluorochromes are oriented relative to each other in a parallel direction during the excited state of the donor.

17. The multichromophore complex according to claim 1 wherein the transition moments of said first and second fluorochromes are oriented relative to each other in tandem during the excited state of the donor.