Use of triplex structure DNA in transferring nucleotide sequences

• US 6,682,907 B1
• Filed: 10/17/2000
• Issued: 01/27/2004
• Est. Priority Date: 04/24/1998
• Status: Expired due to Term

• Current Assignee: Institut National De La Sante Et De La Recherche Medicale (Inserm) (Allianz Global Investors GmbH), Centre National De La Recherche Scientifique, Institut Pasteur
• Original Assignee: Institut Pasteur
• Inventors: Charneau, Pierre, Firat, Hüseyin, Zennou, Véronique
• Primary Examiner(s): PARK, HANKYEL
• Application Number:
  US09/688,990
• Time in Patent Office: 1,197 Days
• Field of Search: 536/23.1, 536/23.72, 424/199.1, 424/208.1, 435/5, 435/6, 435/69.1
• US Class Current: 435/69.1
• CPC Class Codes: A01K 2217/05 Animals comprising random inserted nucleic acids (transgenic)
• CPC Class Codes: A61K 2039/51 comprising whole cells, viruses or DNA/RNA
• CPC Class Codes: A61K 48/00 Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
• CPC Class Codes: A61P 31/14 for RNA viruses
• CPC Class Codes: A61P 37/04 Immunostimulants
• CPC Class Codes: C07K 14/4748 Tumour specific antigens; Tumour rejection antigen precursors [TRAP], e.g. MAGE
• CPC Class Codes: C12N 15/86 Viral vectors
• CPC Class Codes: C12N 15/87 Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
• CPC Class Codes: C12N 2740/16043 viral genome or elements thereof as genetic vector
• CPC Class Codes: C12N 2740/16062 by genetic engineering
• CPC Class Codes: C12N 2830/50 regulating RNA stability, not being an intron, e.g. poly A signal
• CPC Class Codes: C12N 2840/20 translation of more than one cistron
• CPC Class Codes: C12N 2840/203 having an IRES
• CPC Class Codes: C12N 7/00 Viruses; Bacteriophages; Compositions thereof; Preparation or purification thereof preparing medicinal viral antigen or antibody compositions, e.g. virus vaccines, A61K39/00

Abstract

A recombinant vector comprising a polynucleotide containing a cis-acting central initiation region (cPPT) and a cis-acting termination region (CTS) is disclosed. These regions are of retroviral or retroviral-like origin. The vector further comprises a defined nucleotide sequence (transgene or sequence of interest) and regulatory signals for reverse transcription, expression, and packaging, wherein the regulatory signals are of retroviral or retroviral-like origin. In some embodiments the vector is incorporated into compositions for therapeutic purposes. In other embodiments the vector is incorporated into immunogenic compositions, The vector is also useful for methods such as ex vivo transfection or ex vivo transduction of non-mitotic differentiated cells.

Claims

1. A recombinant vector comprising a polynucleotide containing a cis-acting central initiation region (cPPT) and a cis-acting termination region (CTS), these regions being of retroviral or retroviral-like origin, said vector further comprising a defined nucleotide sequence (transgene or sequence of interest) and regulatory signals for reverse transcription, expression, and packaging, wherein said regulatory signals are of retroviral or retroviral-like origin.

2. Recombinant vector according to claim 1, wherein the sequences of retroviral origin are derived from a lentivirus genome.

3. Recombinant vector according to claim 1, wherein the sequences of retroviral-like origin are derived from a retrotransposon.

4. Recombinant vector according to claim 1, wherein the transgene or the sequence of interest is contained in an expression cassette comprising regulatory signals for transcription and expression.

12. Recombinant vector according to claim 1, which is the plasmid pTRIP.EGFP, deposited with the CNCM on Apr. 15th, 1998, under Accession Number I-2005.

13. Recombinant vector according to claim 1, which is the plasmid pTRIP.MEL-IRES-GFP, deposited with the CNCM on Apr. 20th, 1999, under Accession Number I-2185.

23. Recombinant cells comprising a vector according to claim 1.

24. Recombinant cells according to claim 23, which comprise non-mitotic, differentiated, eukaryotic cells.

25. Recombinant cells according to claim 23, comprising primary eukaryotic cells or immortalized cell lines.

26. Recombinant cells according to claim 25, comprising lung cells, brain cells, epithelial cells, astrocytes, microglia, oligodendrocytes and neurons, muscle, hepatic, dendritic, neuronal cells, bone marrow stem cells, macrophages, fibroblasts, hematopoietic cells, or lymphocytes.

27. Composition for therapeutic purposes, which comprises a vector according to claim 1.

28. Composition for therapeutic purposes, which comprises recombinant cells according to claim 23.

29. Immunogenic composition, which comprises a vector according to claim 1.

32. A method of ex vivo transfection or ex vivo transduction of non-mitotic differentiated cells comprising transfecting or tranducing the recombinant vector as claimed in claim 1 into non-mitotic differentiated cells.

33. A method of ex vivo transfection or ex vivo transduction of primary cells or immortalized cell lines comprising transfecting or transducing the recombinant vector claimed in claim 1 into primary cells or immortalized cell lines.

35. Polynucleotide according to claim 33, wherein the nucleotide sequence derived from the retroviral genome is derived from a HIV genome, in particular HIV-1, and comprises about 98 nucleotides, and in that the cPPT nucleotide sequence comprises at least 10 nucleotides, and the cis-acting CTS nucleotide sequence comprises at least 15 nucleotides, the nucleotide sequences cPPT and CTS being derived from a HIV genome, preferably HIV-1.

36. Polynucleotide according to claim 33, which comprises a single-stranded or double-stranded polynucleotides.

37. Polynucleotide according to claim 33, which is a triplex form.

39. A method of in vivo transduction comprising transducing a recombinant vector or a polynucleotide as claimed in claim 1 for in vivo transduction.

40. The method as claimed in claim 39 wherein in vivo transduction further comprises injection into a tissue.

41. Polynucleotide according to claim 33 combined with a nucleotide sequence of interest or with a transgene.

5. Recombinant retroviral particles comprising a polynucleotide containing a cis-acting central initiation region (cPPT) and a cis-acting termination region (CTS), these regions being of retroviral or retroviral-like origin and being inserted in a functional orientation with regulatory signals for reverse transcription, wherein said regulatory signals are of retroviral or retroviral-like origin.

7. Recombinant vector according to claim 5, wherein the regulatory signals for reverse transcription, expression, and packaging are of lentiviral origin, and the polynucleotide comprising the cPPT and CTS regions is of lentiviral origin.

8. Recombinant vector according to claim 5, wherein the regulatory signals for reverse transcription, expression, and packaging and the polynucleotide comprising the cPPT and CTS regions are derived from a HIV-type retrovirus, in particular HIV-1 or HIV-2.

9. Recombinant vector according to claim 8, wherein the regulatory signals for reverse transcription, expression, and packaging and the polynucleotide comprising the cPPT and CTS regions are derived from a virus selected from the lentiviruses CAEV, EIAV, VISNA, HIV, SIV or FIV.

10. Recombinant vector according to claim 9, wherein the polynucleotide is a DNA sequence comprising the cis-acting central initiation region (cPPT) and the termination region (CTS) of a HIV-1 retroviral genome.

11. Recombinant vector according to claim 9, wherein the polynucleotide comprises the cPPT and CTS regions of a sequence which may be selected from the sequences shown in FIG. 11 or one of these sequences, mutated by deletion or insertion of one or more nucleotides, provided that the polynucleotide permits the formation of a triplex on reverse transcription of the vector under the control of suitable regulatory elements.

14. Recombinant vector according to claim 5, wherein the gag, pol, and env sequences are derived from sequences of a HIV retrovirus, in particular HIV-1 or HIV-2.

15. Recombinant vector according to claim 5, wherein the gag and pol sequences are derived from the sequences of a HIV retrovirus and the env sequence is derived from a different HIV retrovirus or from a virus.

16. Recombinant vector according to claim 15, wherein the env sequence codes for amphotropic ENV polypeptides.

17. Recombinant vector according to claim 15, wherein the env sequence codes for ecotropic ENV polypeptides.

18. Recombinant vector according to claim 15, wherein the env sequence is derived from the vesicular somatitis virus VSV).

22. Recombinant vector according to claim 15, wherein the regulatory signals for reverse transcription, expression and packaging and the polynucleotide comprising the cPPT and CTS regions are derived from a yeast retrotransposon.

6. Recombinant retroviral vector particles comprising:

(a) a gag polypeptide corresponding to nucleoproteins of a lentivirus or to functional polypeptide derivatives (GAG polypeptides);

(b) a pol polypeptide constituted by the RT, PRO, IN proteins of a lentivirus or a functional polypeptide derivative (POL polypeptide);

(c) an envelope polypeptide or functional polypeptide derivatives (ENV polypeptides);

(d) a recombinant nucleotide sequence comprising a defined nucleotide sequence (transgene or a sequence of interest),

placed under the control of regulatory signals for transcription and expression;

a sequence containing regulatory signals for reverse transcription, expression, and packaging, wherein the regulatory signals are of retroviral or retroviral-like origin; and

a polynucleotide comprising a cis-acting central initiation region (cPPT) and a cis-acting termination region (CTS), these regions being of retroviral or retroviral-like origin and being inserted in a functional orientation with said regulatory signals of retroviral or retroviral-like origin.

19. Recombinant vector particles comprising a recombinant nucleotide sequence comprising a defined nucleotide sequence (transgene), placed under the control of regulatory signals for transcription and expression, regulatory signals for reverse transcription, expression and packaging and a polynucleotide containing a cis-acting central initiation region (cPPT) and a cis-acting termination region (CTS).

20. Recombinant vector particles comprising a recombinant nucleotide sequence containing a defined nucleotide sequence (transgene or sequence of interest), placed under the control of regulatory signals for transcription and expression, regulatory signals for reverse transcription, expression and packaging of a retrotransposon and a polynucleotide containing a cis-acting central initiation region (cPPT) and a cis-acting termination region (CTS), these regions being derived from a transposon and being inserted in a functional orientation with the retrotransposon regulatory signals.

21. Recombinant retroviral-like particles comprising:

a) a polynucleotide containing a cis-acting central initiation region (cPPT) and a cis-acting termination region (CTS), these regions being derived from a retrotransposon and inserted in a functional orientation with retrotransposon regulatory signals;

b) a polypeptide corresponding to the nucleoproteins of a retrotransposon or to functional polypeptide derivatives (GAG polypeptides);

c) a pol polypeptide corresponding to RT, PRO, IN proteins of a retrotransposon or a functional polypeptide derivative (POL polypeptide);

d) a viral envelope polypeptide;

e) a recombinant nucleotide sequence comprising a defined nucleotide sequence (transgene or sequence of interest), placed under the control of regulatory signals for transcription and expression, and regulatory signals for reverse transcription, expression and packaging of the retrotransposon.

30. A method of constructing a recombinant virus, wherein the method comprises inserting a polynucleotide into a recombinant vector, wherein the polynucleotide comprises a cis-acting central initiation region (cPPT) and a cis-acting termination region (CTS), these regions being of retroviral or retroviral-like origin.

31. A method of ex vivo nuclear import of a transgene or nucleotide sequence of interest into a eukaryotic cell, wherein the method comprises constructing a vector, wherein the vector comprises a cis-acting central initiation region (cPPT) and a cis-acting termination region (CTS) wherein the CPPT and CTS regions are of retroviral or retroviral-like origin, and importing the transgene or nucleotide sequence of interest into the cell.

34. A polynucleotide comprising a nucleotide sequence derived from a retroviral genome and containing about 80 to 120 nucleotides, preferably 90 to 110 nucleotides, said nucleotide sequence being flanked on one side by a cis-acting central initiation nucleotide sequence (cPPT) and on the other side by a cis-acting central termination nucleotide sequence (CTS).

38. A method of transfection or transduction of eukaryotic cells with a transgene or a polynucleotide of interest comprising transfecting or transducing a polynucleotide comprising a cis-acting central initiation region (cPPT) and cis-acting termination region (CTS), these regions being of retroviral or retroviral-like origin, into a eukaryotic cell.