Methods and compositions for controlled polypeptide synthesis

• US 6,686,446 B2
• Filed: 06/08/2001
• Issued: 02/03/2004
• Est. Priority Date: 03/19/1998
• Status: Expired due to Term

• Current Assignee: Regents of the University of California (University of California)
• Original Assignee: Regents of the University of California (University of California)
• Inventors: Wyrsta, Michael D., Curtin, Scott A., Seidel, Scott W., Hwang, Jungyeon, Yu, Miaoer, Nowak, Andrew, Deming, Timothy J.
• Primary Examiner(s): Low, Christopher S. F.
• Assistant Examiner(s): Lukton, David
• Application Number:
  US09/877,957
• Publication Number:
  US 20020032309A1
• Time in Patent Office: 970 Days
• Field of Search: 556/1, 556/45, 556/136, 556/137, 556/138, 530/333, 530/338
• US Class Current: 530/333
• CPC Class Codes: C07K 1/084 containing nitrogen
• CPC Class Codes: C07K 1/088 containing other elements, e.g. B, Si, As
• CPC Class Codes: C07K 1/10 using coupling agents C07K1/006 takes precedence
• CPC Class Codes: C07K 14/00 Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
• CPC Class Codes: C08G 69/10 Alpha-amino-carboxylic acids polysuccinimides C08G73/1092

Abstract

Methods and compositions for the generation of polypeptides having varied material properties are disclosed herein. Methods include means for initiating the polymerization of aminoacid-N-carboxyanhydride (NCA) monomer by combining the monomer with an amido-containing metallacycle, for making self assembling amphiphilic block copolypeptides and related protocols for adding oligo(ethyleneglycol) functionalized aminoacid-N-carboxyanhydrides (NCAs) to polyaminoacid chains. Additional methods include means of adding an end group to the carboxy terminus of a polyaminoacid chain by reacting an alloc-protected amino acid amide with a transition metal-donor ligand complex to forming an amido-amidate metallacycle for use in further polymerization reactions. Novel compositions for use in peptide synthesis and design including five and six membered amido-containing metallacycles and block copolypeptides are also disclosed.

Claims

1. A method of preparing a mixture containing an intermediate in combination with a solvent, wherein said intermediate is useful for making polypeptides, said method comprising reacting an NCA monomer with an initiator molecule in a suitable solvent to form the mixture containing the intermediate,

wherein said initiator molecule comprises an amido-containing metallacycle, which contains a nucleophilic alkyl amido group stabilized by a rigid chelate and a non-nucleophilic proton-accepting group,

and wherein the proton-accepting group is selected from the group consisting of a sulfonamidate, an amidate having an exocyclic carbonyl, a ureate, a carbamate and an aldimate.

2. The method of claim 1 wherein the initiator molecule contains a low valent transition metal.

3. The method of claim 2 wherein the low valent transition metal is ruthenium.

4. The method of claim 1 wherein the initiator molecule is of formula I, II, III or IV:

wherein L is a Lewis base ligand;

n is an integer from 1 to 4;

M is a low valent transition metal;

R2, R3, R5, and R6 are each independently hydrogen or any organic substituent, provided said organic substituent does not bear a free amine, hydroxyl, carboxylic acid, sulfhydryl, isocyanate, imidazole, or a highly protic or nucleophilic functionality;

R4 and R6 are any organic substituent not bearing free amine, hydroxyl, carboxylic acid, sulfhydryl, isocyanate, imidazole, or a highly protic or nucleophilic functionality; and

X is oxygen or NH.

5. The method of claim 4 wherein R2 and R6 are hydrogen and R3 and R5 are phenyl.

6. The method of claim 4 wherein the Lewis base ligand of the initiator molecule is p-cymene.

7. The method of claim 1 wherein the initiator molecule is of the following formula:

wherein ts is tosyl and Ph is phenyl.

8. A method for preparing a polypeptide comprising:

initiating an alpha-amino N-carboxyanhydride (NCA) monomer polymerization by combining a NCA monomer with an initiator molecule, said initiator molecule comprising an amido-containing metallacyle, which contains a nucleophilic alkyl amido group stabilized by a rigid chelate and a non-nucleophilic proton-accepting group, wherein the proton accepting group is selected from the group consisting of a sulfonamidate, an amidate having an exocyclic carbonyl, a ureate, a carbamate and an aldimate;

polymerizing NCA monomers to form the polypeptide; and

isolating the polypeptide.

9. The method of claim 8 wherein the initiator molecule contains a low valent transition metal.

10. The method of claim 9 wherein the low valent transition metal is ruthenium.

11. The method of claim 8 wherein the initiator molecule is of formula I, II, III or IV:

wherein L is a Lewis base ligand;

n is an integer from 1 to 4;

M is a low valent transition metal;

R2, R3, R5, and R6 are each independently hydrogen or any organic substituent, provided said organic substituent does not bear a free amine, hydroxyl, carboxylic acid, sulfhydryl, isocyanate, imidazole, or a highly protic or nucleophilic functionality;

R4 and R6 are any organic substituent, provided said organic substituent does not bear a free amine, hydroxyl, carboxylic acid, sulfhydryl, isocyanate, imidazole, or a highly protic or nucleophilic functionality; and

X is oxygen or NH.

12. The method of claim 11 wherein R2 and R6 are hydrogen and R3 and R5 are phenyl.

13. The method of claim 11 wherein the Lewis base ligand of the initiator molecule is p-cymene.

14. The method of claim 8 wherein the initiator molecule is of the following formula:

wherein ts is tosyl and Ph is phenyl.

15. A method for preparing a mixture which contains a polypeptide in combination with a solvent, said method comprising:

A. initiating an alpha-amino N-carboxyanhydride (NCA) monomer polymerization by combining a NCA monomer with an initiator molecule in a suitable solvent,

(1) wherein said initiator molecule comprises an amido-containing metallacyle, which contains a nucleophilic alkyl amido group stabilized by a rigid chelate and a non-nucleophilic proton-accepting group, and

(2) wherein the proton accepting group is selected from the group consisting of a sulfonamidate, an amidate having an exocyclic carbonyl, a ureate, a carbamate and an aldimate; and

B. polymerizing NCA monomers to form a mixture comprising the polypeptide and the solvent.

16. The method of claim 15 wherein the initiator molecule contains a low valent transition metal.

17. The method of claim 16 wherein the low valent transition metal is ruthenium.

18. The method of claim 15 wherein the initiator molecule is of formula I, II, III or IV:

wherein L is a Lewis base ligand;

n is an integer from 1 to 4;

M is a low valent transition metal;

R2, R3, R5, and R6 are each independently hydrogen or any organic substituent, provided said organic substituent does not bear a free amine, hydroxyl, carboxylic acid, sulfhydryl, isocyanate, imidazole, or a highly protic or nucleophilic functionality;

R4 and R6 are any organic substituent, provided said organic substituent does not bear a free amine, hydroxyl, carboxylic acid, sulfhydryl, isocyanate, imidazole, or a highly protic or nucleophilic functionality; and

X is oxygen or NH.

19. The method of claim 18 wherein R2 and R6 are hydrogen and R3 and R5 are phenyl.

20. The method of claim 18 wherein the Lewis base ligand of the initiator molecule is p-cymene.

21. The method of claim 15 wherein the initiator molecule is of the following formula:

wherein ts is tosyl and Ph is phenyl.