Internet-linked system for directory protocol based data storage, retrieval and analysis

• US 6,947,953 B2
• Filed: 05/18/2001
• Issued: 09/20/2005
• Est. Priority Date: 11/05/1999
• Status: Expired due to Term

• Current Assignee: Board of Trustees of the Leland Stanford Junior University (Stanford University)
• Original Assignee: Board of Trustees of the Leland Stanford Junior University (Stanford University)
• Inventors: Oi, Vernon T., Herzenberg, Leonore A., Herzenberg, Leonard A., Parks, David Rhodes, Moore, Wayne A.
• Primary Examiner(s): Robinson, Greta
• Assistant Examiner(s): Dodds, Jr., Harold E.
• Application Number:
  US09/860,222
• Publication Number:
  US 20020049782A1
• Time in Patent Office: 1,586 Days
• Field of Search: 707 1- 4, 707 6- 10, 707100-1041, 707200-204, 700 99-104, 700/106, 700/107, 700/213, 700/214, 700225-227, 705 1- 3, 705/28, 709200-203, 709/217, 709/223, 709230-232, 600/300, 706/45, 706/59
• US Class Current: 1/1
• CPC Class Codes: G06F 16/25 Integrating or interfacing systems involving database management systems
• CPC Class Codes: G06F 16/258 Data format conversion from or to a database
• CPC Class Codes: G06Q 10/10 Office automation; Time management
• CPC Class Codes: G16B 50/00 ICT programming tools or database systems specially adapted for bioinformatics
• CPC Class Codes: G16B 50/30 Data warehousing; Computing architectures
• CPC Class Codes: G16B 50/40 Encryption of genetic data
• CPC Class Codes: G16H 10/60 for patient-specific data, e.g. for electronic patient records
• CPC Class Codes: G16H 70/00 ICT specially adapted for the handling or processing of medical references
• CPC Class Codes: Y10S 707/99942 Manipulating data structure, e.g. compression, compaction, compilation
• CPC Class Codes: Y10S 707/99945 Object-oriented database structure processing
• CPC Class Codes: Y10S 707/99948 Application of database or data structure, e.g. distributed, multimedia, or image

Abstract

The present invention is related to databases and the exchange of scientific information. Specifically the invention disclosed a unified scientific database that allows researchers to easily share their data with other researches. The present invention also allows for the ease of data collection, annotation, storage, management, retrieval and analysis of scientific data through and into the database. In addition, it allows for archival storage and retrieval of data collected directly from laboratory instruments to ensure data consistency for patent and other purposes. It also allows for ease of sharing data between laboratories in remote locations. The present invention also supports the automated creation of experimental protocols.

Claims

1. A method for managing supplies of an experimental or clinical laboratory using a computer comprising:

(a) Recording reagents used in said laboratory on a database;

(b) Recording amount of said reagents in said laboratory on a computer on said database;

(c) Changing the recorded amount of reagents in the database after the completion of an experiment; and

(d) Notifying laboratory personnel automatically of said amount of said reagents when the laboratory personnel attempts to conduct an experiment and the computer determines there is not enough reagents to conduct the experiment.

2. The method of claim 1, further comprising sending automatic notifications when said amount of supplies is low.

3. The method of claim 2, wherein said automatic notification is performed through electronic mail.

4. The method of claim 1, wherein amount of said supplies is automatically updated.

5. The method of claim 4, wherein:

(a) said computer is coupled to an experiment protocol tracker;

(b) said automatic updating of said supplies occurs when an experimental protocol on said experimental protocol tracker is completed.

6. The method of claim 1 wherein, said automatic updating further comprises an estimation of supplies wasted.

7. The method of claim 1, wherein said estimation of wasted supplies comprises estimating supplies wasted during an experimental protocol.

8. The method of claim 1, wherein said database comprises a directory access protocol for identifying and storing information within said database.

9. The method of claim 8, wherein said database comprises:

(a) applying said directory access protocol to create a directory structure for said database, said directory structure having a plurality of nodes with distinguished names;

(b) defining standardized data; and

(c) transforming said standardized data for mapping onto said plurality of nodes.

10. The method of claim 8, wherein the computer notifies the laboratory personnel of the amount of reagents upon the laboratory personnel requesting the amount of reagents currently recorded in the database as being in stock.