Compositions and methods for detection and isolation of phosphorylated molecules

• US 7,102,005 B2
• Filed: 05/02/2003
• Issued: 09/05/2006
• Est. Priority Date: 05/03/2002
• Status: Active Grant

• Current Assignee: Molecular Probes Incorporated (Thermo Fisher Scientific Incorporated)
• Original Assignee: Molecular Probes Incorporated (Thermo Fisher Scientific Incorporated)
• Inventors: Patton, Wayne, Haugland, Richard, Liu, Jixiang, Beechem, Joseph, Steinberg, Thomas, Gee, Kyle, Martin, Vladimir, Agnew, Brian
• Primary Examiner(s): POWERS, FIONA
• Application Number:
  US10/428,192
• Publication Number:
  US 20040038306A1
• Time in Patent Office: 1,222 Days
• Field of Search: 544/287, 548/110, 548/179, 548/304.1, 548/402, 548/405, 549/227
• US Class Current: 544/287
• CPC Class Codes: G01N 2333/4709 Amyloid plaque core protein
• CPC Class Codes: G01N 33/50 Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing measuring or testing processes involving enzymes or microorganisms, compositions or test papers therefor; processes for forming such compositions, condition responsive control in microbiological or enzymological processes C12Q
• CPC Class Codes: G01N 33/5008 for testing or evaluating the effect of chemical or biological compounds, e.g. drugs, cosmetics
• CPC Class Codes: G01N 33/502 for testing non-proliferative effects
• CPC Class Codes: G01N 33/5091 for testing the pathological state of an organism

Abstract

The present invention relates to phosphate-binding compounds that find use in binding, detecting and isolating phosphorylated target molecules including the subsequent identification of target molecules that interact with phosphorylated target molecules or molecules capable of being phosphorylated. A binding solution is provide that comprises a phosphate-binding compound, an acid and a metal ion wherein the metal ion simultaneously interacts with an exposed phosphate group on a target molecule and the metal chelating moiety of the phosphate-binding compound forming a bridge between the phosphate-binding compound and a phosphorylated target molecule resulting in a ternary complex. The binding solution of the present invention finds use in binding and detecting immobilized and solubilized phosphorylated target molecules, isolation of phosphorylated target molecules from a complex mixture and aiding in proteomic analysis wherein kinase and phosphatase substrates and enzymes can be identified.

Claims

1. A binding solution comprising:

a) a BAPTA metal chelating moiety;

b) a salt comprising trivalent metal ions; and

,

c) an acid.

20. A kit for binding a phosphorylated target molecule in a sample, said kit comprising:

i) a binding solution according to any one of claims 1–

19; and

,

ii) wherein said kit optionally includes molecular weight markers that comprise phosphorylated and non-phosphorylated polypeptides.

21. The kit according to claim 20, wherein said kit independently further comprises a fixing solution, additional detection reagent, standards or a wash solution.

22. The lit according to claim 21, wherein said kit further comprises a matrix.

23. The kit according to claim 22, wherein said matrix further comprises a phosphatase or kinase substrate.

24. The kit according to claim 21, wherein said additional detection reagent is independently a staining solution specific for total proteins, a staining solution specific for glycoproteins or antibodies.

25. The kit according to claim 20, wherein said phosphate-binding compounds having said formula (A)m(L)n(B) are selected from the group consisting of Compound 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 15 and 16.

2. A binding solution comprising:

a) a phosphate-binding compound having formula (A)m(L)n(B) wherein A is a chemical moiety, L is a linker, B is a metal-chelating moiety, m is an integer from 1 to 4 and n is an integer from 0 to 4;

b) a salt comprising trivalent metal ions; and

,

c) an acid.

3. The binding solution according to claim 2, wherein said binding solution has a pH about 3 to about pH 6.

4. The binding solution according to claim 3, wherein said metal ion is selected from the group consisting of Ga³⁺, Fe³⁺ and Al³⁺.

5. The binding solution according to claim 4, wherein said salt is gallium chloride.

6. The binding solution according to claim 5, wherein said chemical moiety is a label that is a dye, an enzyme or a hapten provided that the dye is not sulfonated or said chemical moiety is a reactive group.

7. The binding solution according to claim 6, wherein said hapten is biotin.

8. The binding solution according to claim 6, wherein said dye is selected from the group consisting of a benzofuran, a quinazolinone, a xanthene, an indole, a benzazole and a borapolyazaindacene.

9. The binding solution according to claim 6, wherein said metal-chelating moiety is BAPTA.

10. The binding solution according to claim 9, wherein said compound has the formula (A)m(L)n(B) wherein A is a chemical moiety that is a dye or a reactive group, L is a linker, m is an integer from 1 to 4, n is an integer from 0 to 4 and B is a metal-chelating moiety having said Formula IV comprising;

11. The binding solution according to claim 10, wherein at least one of said R¹–

R⁴ is independently a dye or reactive group and R⁵–

R⁸ is independently selected from the group consisting of H, NO₂, F, CF₃, lower alkyl, and linker wherein said linker is optionally attached to a biotin, a reactive group or a dye.

12. The binding solution according to claim 11, wherein said dye is independently R³, R² or R³ and R² together.

13. The binding solution according to claim 11, wherein said R⁶ or R⁷ is a linker and said linker is optionally attached to a biotin, a reactive group or dye.

14. The binding solution according to claim 11, wherein said R⁶ and R⁵ are independently fluorine.

15. The binding solution according to claim 11, wherein said R⁶ is NO₂.

16. The binding solution according to claim 10, wherein said phosphate-binding compounds having said formula (A)m(L)n(B) are selected from the group consisting of Compound 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 and 12.

17. The binding solution according to claim 2, wherein said binding solution further comprises an organic solvent and a buffering agent.

18. The binding solution according to claim 17, wherein said organic solvent is acetonitrile.

19. The binding solution according to claim 9 or claim 10, wherein said phosphate-binding compounds are in solution or immobilized on a solid or semi-solid matrix.