Methods and compositions for identifying receptor effectors

• US 7,122,305 B2
• Filed: 12/21/2000
• Issued: 10/17/2006
• Est. Priority Date: 03/31/1993
• Status: Expired due to Fees

• Current Assignee: Cadus Technologies Incorporated
• Original Assignee: Cadus Technologies Incorporated
• Inventors: Trueheart, Joshua, Murphy, Andrew J., Paul, Jeremy, Klein, Christine A., Fowlkes, Dana M., Broach, James, Manfredi, John
• Primary Examiner(s): Andres, Janet L.
• Assistant Examiner(s): Chandra, Gyan
• Application Number:
  US09/747,774
• Publication Number:
  US 20010026926A1
• Time in Patent Office: 2,126 Days
• Field of Search: 435/254.2, 435/254.11, 435/483, 435/6, 435/7.1, 435/7.31, 530/300, 530/350, 436/6, 536/23.4
• US Class Current: 435/6.14
• CPC Class Codes: C07K 14/395 from Saccharomyces
• CPC Class Codes: C07K 2319/02 containing a signal sequence
• CPC Class Codes: C12N 15/81 for yeasts

Abstract

The present invention makes available a rapid, effective assay for screening and identifying pharmaceutically effective compounds that specifically interact with and modulate the activity of a cellular receptor or ion channel. The subject assay enables rapid screening of large numbers of polypeptides in a library to identifying those polypeptides which induce or antagonize receptor bioactivity. The subject assay is particularly amenable for identifying surrogate ligands for orphan receptors.

Claims

1. A mixture of recombinant yeast cells, each cell of which comprises:

(i) a recombinant gene encoding a heterologous orphan G protein-coupled receptor wherein said receptor is expressed on the cell membrane of said cell such that signal transduction activity is modulated by interaction with an extracellular signal; and

(ii) a recombinant gene encoding a heterologous test polypeptide, wherein the test polypeptide is transported to a location allowing interaction with the receptor expressed on the cell membrane,

wherein collectively the mixture of cells expresses a library of said test polypeptides, and modulation of the signal transduction activity of the receptor by a heterologous test polypeptides within the library provides a detectable signal.

18. The mixture of any of claims 1, 2, 3, 4 or 14, wherein the G protein-coupled receptor is selected from the group consisting of a chemoattractant peptide receptor, a neuropeptide receptor, a light receptor, a neurotransmitter receptor, a cyclic AMP receptor, and a polypeptide hormone receptor.

2. A mixture of recombinant yeast cells, each cell of which comprises:

(i) a heterologous orphan G protein-coupled receptor wherein said receptor is expressed on the cell membrane of said cell such that signal transduction activity is modulated by interaction with an extracellular signal;

(ii) a recombinant gene encoding a heterologous test polypeptide, receptor, wherein the test polypeptide is transported to a location allowing interaction with the receptor expressed on the cell membrane; and

(iii) a reporter gene construct containing a reporter gene in operative linkage with one or more transcriptional regulatory elements responsive to the signal transduction activity of the receptor,

wherein collectively the mixture of cells expresses a library of test polypeptides.

3. A mixture of recombinant yeast cells, each cell of which comprises:

(i) an orphan G protein-coupled receptor wherein said receptor is expressed on the cell membrane of said cell such that signal transduction activity is modulated by interaction with an extracellular signal;

(ii) a recombinant gene encoding a heterologous test polypeptide and including a signal sequence for secretion, wherein the test polypeptide is transported to a location allowing interaction with the receptor expressed on the cell membrane; and

(iii) a reporter gene construct containing a reporter gene in operative linkage with one or more transcriptional regulatory elements responsive to the signal transduction activity of the receptor,

wherein collectively the mixture of cells expresses a library of test polypeptides.

4. A mixture of recombinant yeast cells, each cell of which comprises:

(i) an orphan G protein-coupled receptor wherein said receptor is expressed on the cell membrane of said cell such that signal transduction activity is modulated by interaction with an extracellular signal; and

(ii) a recombinant gene encoding a heterologous test polypeptide and including a signal sequence for secretion, wherein the test polypeptide is transported to a location allowing interaction with the receptor expressed on the cell membrane,

wherein collectively the mixture of cells expresses a library of test polypeptides, and modulation of the signal transduction activity of the receptor by a test polypeptide within the library provides a detectable signal.

5. The mixture of claim 4, wherein each cell further comprises a reporter gene construct containing a reporter gene in operative linkage with one or more transcriptional regulatory elements responsive to the signal transduction activity of the receptor, expression of the reporter gene providing the detectable signal.

6. The mixture of claim 4, wherein the reporter gene encodes a gene product that gives rise to a fluorescence detectable signal.

7. The mixture of claim 5, wherein the reporter gene encodes a beta-galactosidase gene product.

8. The mixture of claim 4, wherein each cell further comprises a heterologous gene construct encoding the receptor.

9. The mixture of claim 4, wherein the variegated population of test polypeptides includes at least 10³ different test polypeptides.

10. A recombinant yeast cell, comprising:

(i) a recombinant gene encoding a heterologous G protein-coupled receptor protein wherein said receptor is expressed on the cell membrane of said cell such that signal transduction activity is modulated by an extracellular signal;

(ii) a recombinant gene encoding a heterologous test polypeptide, wherein the test polypeptide is transported to a location allowing interaction with the receptor expressed on the cell membrane; and

(iii) a reporter gene construct containing a reporter gene in operative linkage with one or more transcriptional regulatory elements responsive to the signal transduction activity or the receptor.

11. The recombinant cell of claim 10, wherein the reporter gene encodes a fluorescence gene product that gives rise to a fluorescence detectable signal.

12. The recombinant cell of claim 10, which yeast cell is a Saccharomyces cell.

13. The recombinant cell of claim 10, which yeast cell is a Schizosaccharomyces cell.

19. The recombinant yeast cell of claim 10, wherein the G protein-coupled receptor is selected from the group consisting of a chemoattractant peptide receptor, a neuropeptide receptor, a light receptor, a neurotransmitter receptor, a cyclic AMP receptor, and a polypeptide hormone receptor.

14. A mixture of recombinant yeast cells, each cell of which comprises:

(i) a recombinant gene encoding a heterologous orphan G protein-coupled receptor wherein said receptor is expressed on the cell membrane of said cell such that signal transduction activity is modulated by interaction with an extracellular signal;

(ii) a recombinant gene encoding a heterologous test polypeptide and including a signal sequence for secretion, wherein the test polypeptide is transported to a location allowing interaction with the receptor expressed on the cell membrane; and

(iii) a reporter gene construct containing a reporter gene in operative linkage with one or more transcriptional regulatory elements responsive to the signal transduction activity of the receptor,

wherein collectively the mixture of cells expresses a library of test polypeptides.

15. The mixture of claim 14, which yeast cell is a Saccharomyces cell.

16. The mixture of claim 14, which yeast cell is a Schizosaccharornyces cell.

17. The mixture of claim 14, wherein the variegated population of test polypeptides includes at least 10³ different test polypeptides.