Microwell biochip

• US 7,217,520 B2
• Filed: 04/12/2004
• Issued: 05/15/2007
• Est. Priority Date: 10/15/2001
• Status: Expired due to Term

• Current Assignee: Biocept, Inc.
• Original Assignee: Biocept, Inc.
• Inventors: Hahn, Soonkap, Tsinberg, Pavel, Falcovitz-Gerassi, Yehudit Hannah, Roycroft, Pat
• Primary Examiner(s): FORMAN, BETTY J
• Application Number:
  US10/823,021
• Publication Number:
  US 20040191891A1
• Time in Patent Office: 1,128 Days
• Field of Search: None
• US Class Current: 435/6.19
• CPC Class Codes: B01D 61/18 Apparatus therefor
• CPC Class Codes: B01J 2219/00286 Reactor vessels with top and bottom openings
• CPC Class Codes: B01J 2219/00317 Microwell devices, i.e. having large numbers of wells
• CPC Class Codes: B01J 2219/00385 Printing
• CPC Class Codes: B01J 2219/00423 using filtration, e.g. through porous frits
• CPC Class Codes: B01J 2219/00576 fluorophore
• CPC Class Codes: B01J 2219/00702 Processes involving means for analysing and characterising the products
• CPC Class Codes: B01J 2219/00722 Nucleotides
• CPC Class Codes: B01J 2219/00725 Peptides
• CPC Class Codes: B01J 2219/00743 Cells
• CPC Class Codes: B01L 2200/0689 Sealing
• CPC Class Codes: B01L 2200/12 Specific details about manufacturing devices
• CPC Class Codes: B01L 2300/0819 Microarrays; Biochips
• CPC Class Codes: B01L 2400/049 vacuum
• CPC Class Codes: B01L 3/50255 Multi-well filtration
• CPC Class Codes: C40B 40/06 Libraries containing nucleotides or polynucleotides, or derivatives thereof
• CPC Class Codes: C40B 40/10 Libraries containing peptides or polypeptides, or derivatives thereof
• CPC Class Codes: C40B 60/14 for creating libraries
• CPC Class Codes: G01N 2021/0346 Capillary cells; Microcells
• CPC Class Codes: G01N 21/03 Cuvette constructions
• CPC Class Codes: G01N 33/54366 : Apparatus specially adapted for solid-phase testing
• CPC Class Codes: G01N 33/54393 : Improving reaction conditions or stability, e.g. by coating or irradiation of surface, by reduction of non-specific binding, by promotion of specific binding

Abstract

Microwell biochips (11) are formed from a thin flat plate (13) of polymeric material having a plurality of regularly spaced holes (15) that extend completely therethrough and create microwells. The lower end of each hole is closed by a microporous, hydrophobic, polymeric membrane (17) laminated to the undersurface of the plate which retains an aqueous test solution in the wells until a vacuum is applied to the undersurface thereof to effect draining of the solution and of any wash solution that might be subsequently added. A spot of polymerizing isocyanate-functional hydrogel is applied generally centrally to the porous membrane surface at the bottom of each well in a manner so as to cover only a minor portion of the surface and out of contact with the well sidewalls, thus leaving substantial surface area through which drainage can be readily effected. Biological capture agents are associated with the polymerizing hydrogel so as to become immobilized as a part thereof.

Claims

1. A device for holding a liquid solution and allowing the reaction thereof with immobilized biological material as a part of an assay, which device comprises:

a plate in which there are formed a group of wells which extend completely therethrough, wherein the walls of said wells are substantially liquid impervious,

a microporous material closing the bottom of each said well, and

at least one spot of a polymer attached to the upper surface of said microporous material at the bottom of each of a plurality of said wells, which spot comprises a crosslinked hydrogel polymer having biological material so immobilized on or within the polymer as to be contactable by a liquid supplied to said well and which spot covers only a portion of the bottom surface of each well, leaving a substantial portion through which drainage can be effected.

2. The device of claim 1 wherein said polymer spots are three-dimensional and are generally centrally located on said upper surface of said microporous material.

3. The device of claim 2 wherein said biological material which is immobilized on or within said three-dimensional spots comprises DNA, RNA, protein or living cells.

4. The device of claim 1 wherein said group of wells is arranged to form a regular array.

5. The device of claim 4 wherein at least some of said plurality of wells contain different biological materials.

6. The device of claim 1 wherein the polymer is formed from an isocyanate-functional prepolymer, which prepolymer comprises polyethylene glycol or polypropylene glycol.

7. The device of claim 1 wherein said microporous material is hydrophobic and said microporosity is such that an aqueous solution supplied to said well remains therein until the application of a vacuum to the undersurface of said microporous material.

8. The device of claim 7 wherein said microporous material has an average pore size not greater than about 1 μ

m.

9. The device of claim 1 wherein the plate is formed of polycarbonate, polystyrene, polypropylene, polytetrafluoroethylene, polyethylene or a combination thereof and has a uniform thickness not greater than about 2 mm.

10. The device of claim 9 wherein said microporous material comprises a polymeric membrane formed of polypropylene, polytetrafluoroethylene or polyethersulfone having an average pore size of about 1 μ

m or less.

11. The device of claim 1 wherein said microporous material is fused to the undersurface of said plate by ultrasonic welding to densify and render such material impermeable throughout except for those regions aligned with said wells.

12. A method for carrying out a biological assay using the device of claim 1, which method comprises the steps of:

a) introducing a test solution into wells of a device according to claim 1,

b) after allowing opportunity for hybridization and/or binding to occur, applying a vacuum to the device to remove said solution from said wells,

c) applying an optically active reagent to each said well, and

d) optically detecting the assay results from each said well.

13. The method of claim 12 wherein an aqueous test solution is supplied to each of said wells and allowed to remain therein for a sufficient period for hybridization or binding to take place and wherein in each of said wells is then washed to remove unbound test solution.

14. A method of making a device according to claim 1 for holding immobilized biological material and exposing said immobilized biological material to a test solution for potential reaction therewith as a part of an assay, which method comprises:

providing a flat plate in which there are formed a group of holes which extend completely therethrough, which holes are arranged in a regular pattern,

associating a hydrophobic microporous membrane with the undersurface of said plate so as to close the bottom of each of said holes and thereby create a plurality of microwells which are defined by the thickness of the plate,

attaching said membrane to the undersurface of said plate in regions that surround the perimeter about each of said holes in a manner so as to create a barrier against diffusion of a liquid solution, to be supplied to said wells, through said membrane and

applying at least one micro droplet of prepolymer hydrogel material to the upper surface of the membrane in each of at least a plurality of said wells in a manner so as to polymerize and cover only a minor portion of the surface area of said well bottom and associating said biological material with the polymerizing microdroplet so as to become immobilized as a part thereof, whereby drainage of an aqueous solution through said hydrophobic membrane at the bottom of each said well can be effected by the application of vacuum to the undersurface of said membrane.

15. The method of claim 14 wherein said spots are located generally centrally of the bottom surface of each well.

16. The method of claim 14 wherein said attaching is carried out by fusing a polymeric membrane to said plate by ultrasonically welding said membrane to the undersurface of said plate in regions surrounding each of said holes.

17. The method according to claim 14 wherein said spots which are applied are three-dimensional and cover less than 50% of the surface area of the bottom of each well and comprise a mixture of an isocyanate-functional hydrogel and a biological material linked thereto in a manner so as to be exposed to a liquid solution supplied to said well.

18. A multiwell device for holding liquid solutions in the wells and allowing reaction to occur between the solution and immobilized biological material in the wells as a part of an assay, which device comprises:

a flat plate in which there are formed a plurality of wells by holes which extend completely through the thickness of said plate, wherein the sidewalls of said holes provide walls of said wells which are substantially liquid impervious,

a microporous material closing the bottom of each said hole,

at least one three-dimensional spot of a crosslinked hydrogel polymer attached to only a portion of an upper surface area of said microporous material at the bottom of each of a plurality of said wells so that drainage can be effected through the portion of said surface area without said hydrogel polymer, and

biological material so immobilized on or within the hydrogel polymer as to be contactable by liquid supplied to said well.