Device for referencing fluorescence signals

• US 7,262,842 B2
• Filed: 03/20/2002
• Issued: 08/28/2007
• Est. Priority Date: 03/28/2001
• Status: Expired due to Term

• Current Assignee: Clondiag Chip Technologies GmbH (Abbott Laboratories)
• Original Assignee: Clondiag Chip Technologies GmbH (Abbott Laboratories)
• Inventors: Ermantraut, Eugen, Tuchscheerer, Jens, Kaiser, Thomas
• Primary Examiner(s): Lauchman; Layla G.
• Application Number:
  US10/472,974
• Publication Number:
  US 20040196455A1
• Time in Patent Office: 1,987 Days
• Field of Search: 3562431-2438, 356/317, 356/318, 428/327, 428/349, 257/414, 257/431, 250/252.1, 250/458.1
• US Class Current: 356/243.1
• CPC Class Codes: G01N 21/278 Constitution of standards
• CPC Class Codes: G01N 21/6452 Individual samples arranged in a regular 2D-array, e.g. multiwell plates

Abstract

The invention relates to a device for referencing fluorescence signals and/or calibration of fluorescence detection systems, whereby the device comprises an essentially non-fluorescing support, on which are applied polymer layers in several defined regions and with partly varying thicknesses and/or compositions. Said polymer layers are applied to the support such as to fluoresce after corresponding irradiation and the device may thus be used as a fluorescence standard. The invention further relates to a method for the production of said fluorescence standards.

Claims

1. A device for referencing fluorescence signals, comprising:

an essentially non-fluorescent carrier;

a plurality of polymer layers applied to the carrier, at least one polymer layer applied to defined regions of the carrier; and

a plurality of biological probe molecules immobilized with respect to the carrier and configured to interact with a biological target molecule;

wherein;

the at least one polymer layer fluoresces in response to corresponding irradiation, and wherein at least two of the polymer layers differ with regard to their thickness and/or composition.

2. The device of claim 1, wherein the polymer layers comprise one or more polymers, and wherein at least one of the polymers fluoresces in response to corresponding irradiation.

3. The device of claim 2, wherein the polymers comprise positive photosensitive coatings and/or negative photosensitive coatings.

4. The device of claim 1, wherein the polymer layers comprise fluorescent substances.

5. The device of claim 4, wherein the fluorescent substances comprise at least one of organic dyes and inorganic dyes.

6. The device of claim 1, wherein the intensity of the fluorescence is adjustable by selecting one or more of the layer thickness and the composition of the polymer layers.

7. The device of claim 6, wherein the intensity of the fluorescence is adjustable proportionally to the thickness of the polymer layers applied in the defined regions.

8. The device of claim 1, wherein the intensity of the fluorescence is adjustable by physical treatment methods during the manufacture process, wherein the physical treatment methods include irradiation treatment and temperature treatment.

9. The device of claim 1, wherein the excitation wavelength range of the polymer layers is adjustable by the selection of the polymers.

10. The device of claim 1, wherein, the fluorescence occurring in the defined regions after corresponding irradiation over an extended period, has a bleaching behavior that is adjustable by the selection of at least one of the kind, the quantity, and the composition of the polymer.

11. The device of claim 1, wherein the fluorescence occurring in the defined regions after corresponding irradiation over an extended period, has a bleaching behavior that is adjustable by physical treatment methods during the manufacturing process.

12. The device of claim 1, wherein the maximum thickness of the polymer layers in at least one of the defined regions is significantly smaller than the minimal focal depth of a detection system used for fluorescence measurement.

13. The device of claim 12, wherein the maximum thickness of the polymer layers is between about one nanometer and a max of about 50 μ

m.

14. The device of claim 1, wherein the defined regions differ in at least one of shape and size.

15. The device of claim 14, wherein the defined regions have a substantially rectangular shape with side lengths between about one nanometer and about 5 mm.

16. The device of claim 14, wherein the defined regions have a substantially circular shape with a diameter between about one nanometer and about 5 mm.

17. The device of claim 1, wherein the defined regions are applied in array form on the carrier.

18. The device of claim 1, wherein the carrier comprises essentially non-fluorescent materials including at least one of glass, metalized glass, silicium, metal, and plastic.

19. The device of claim 18, wherein the carrier comprises essentially non-fluorescent materials with optical transmittance, and wherein the materials include at least one of quartz glass, borofloat glass;

polymethyl methacrylate (PMMA), and polycarbonate.

20. The device of claim 1, wherein the device comprises at least one fluorescence calibration standard and is attached to an essentially non-fluorescent carrier system, and wherein the carrier system comprises at least one of glass, metalized glass, silicium, metal, and plastic.

21. The device of claim 20, wherein the essentially non-fluorescent carrier system has optical transmittance, and wherein the carrier system includes at least one of quartz glass, borofloat glass, PMMA, and polycarbonate.

22. The device of claim 21, wherein the carrier system is a microscope slide.

23. The device of claim 1, wherein the plurality of biological probe molecules are arranged in the form of a probe array.

24. The device of claim 23, wherein the biological probe molecules include at least one of peptides and proteins.

25. The device of claim 23, wherein the biological probe molecules include nucleic acid molecules.

26. The device of claim 1, wherein at least one of cells, tissue slices, pharmaceutically active compounds, and plasmids are immobilized on the carrier.

42. The device of claim 3, wherein the polymers are based on epoxy resins including at least one of SU8, novolak, PMMA, photosensitive polyimide, and benzocyclobutene.

43. The device of claim 5, wherein the organic dyes include at least one of an azo dye, a triphenyl methan dye, a porphynine dye and a perylene derivative, and wherein the inorganic dye includes a metallic dye and a lanthanide.

44. The device of claim 4, wherein the excitation wavelength range of the polymer layers is adjustable by the selection of the fluorescent substances.

45. The device of claim 4, wherein the fluorescence occurring in the defined regions after corresponding irradiation over a extended period, has a bleaching behavior that is adjustable by the selection of at least one of the kind, the quantity, and the composition of the fluorescent substances.

46. The device of claim 11, wherein the physical treatment methods include at least one of an irradiation treatment and a temperature treatment.

27. A method of manufacturing a device for referencing fluorescence signals, comprising:

applying at least one polymer layer to at least one defined region of an essentially non-fluorescent carrier using a microtechnical process, wherein the at least one polymer layer fluoresces in response to corresponding irradiation; and

immobilizing a plurality of biological probe molecules with respect to the carrier.

28. The method of claim 27, wherein the at least one polymer layer is applied to the carrier by positive or negative photolithographic methods.

29. The method of claim 27, wherein the at least one polymer layer is applied to the carrier as a homogenic layer.

30. The method of claim 27, wherein the thickness of the polymer layer is dependent upon the parameters of the application process, and wherein the parameters include at least one of the viscosity of the polymer, the temperature, the atmospheric humidity, and the circulation speed.

31. The method of claim 27, wherein the geometric form of the defined regions is determined by corresponding recesses in a mask.

32. The method of claim 27, wherein, when more than one polymer layer is applied, cross-linking behavior of the polymer layers is adjustable by tempering and/or irradiation protocols.

33. The method of claim 27, further comprising combining the device with an essentially non-fluorescent carrier system, by way of at least one of adhesion, position adjustment, and a vacuum system.

34. A method of online calibration of fluorescence detection systems with regard to at least one of their spatial or temporal resolution, their geometric and/or dynamic characteristics, and their characteristics caused by aging, comprising:

irradiating a device including;

an essentially non-fluorescent carrier;

a plurality of polymer layers applied to the carrier, at least one polymer layer applied to defined regions of the carrier; and

a plurality of biological probe molecules immobilized with respect to the carrier and configured to interact with a biological target molecule;

wherein the at least one polymer layer fluoresces in response to corresponding irradiation, and wherein at least two of the polymer layers differ with regard to their thickness and/or composition; and

measuring fluorescence from the at least one polymer layer.

35. The method of claim 34, wherein irradiating comprises at least one of measuring and/or regulating laser power, measuring lamp power and/or alignment of integration time, and resolution adaptation.

36. The method of claim 34, wherein measuring fluorescence comprises flat field determination and/or linearization of CCD reader systems.

37. The method of claim 34, further comprising cross-system and/or cross-device comparison of fluorescent signals by standardizing the experimental results to resulting intensities of the polymer layers.

38. The method of claim 34, further comprising quantifying fluorescence signals by standardizing the experimental results to the resulting intensities of the polymer layers for defining absolute results or for defining relative results based on the fluorescence of the polymer layers.

39. The method of claim 34, wherein the fluorescence signals are from protein-protein-interaction studies including at least one of antibody-antigene and/or receptor-ligand interaction studies, nucleic acid-nucleic acid interaction studies, DNA-RNA and/or DNA-DNA and/or RNA-RNA interaction studies, and protein-nucleic acid interaction studies.

40. A method of cross-system and cross-device and/or cross-test comparison of cellular localization experiments and tissue slices which are evaluable by fluorescence microscopy, comprising:

irradiating a device including;

an essentially non-fluorescent carrier;

a plurality of polymer layers applied to the carrier, at least one polymer layer applied to defined regions of the carrier, and

a biological sample including a cell or a tissue slice immobilized with respect to the carrier;

wherein the at least one polymer layer fluoresces in response to corresponding irradiation, and wherein at least two of the polymer layers differ with regard to their thickness and/or composition; and

measuring fluorescence from the at least one polymer layer.

41. A fluorescence calibration device, comprising:

an essentially non-fluorescent carrier having one or more defined regions;

at least one polymer layer applied to the one or more defined regions; and

a plurality of biological probe molecules immobilized with respect to the carrier and configured to interact with a biological target molecule;

wherein the polymer layer is uniform with regard to layer thickness and composition, such that the one or more defined regions fluoresce after corresponding irradiation.

47. A device, comprising:

a support;

a plurality of spaced-apart polymer masses each being immobilized with respect to the support; and

a plurality of biological probe molecules immobilized with respect to the support;

wherein each of the polymer masses is configured to emit, at a common predetermined wavelength, a respective, different fluorescence intensity when irradiated with light; and

the biological probe molecules are configured to interact with a biological target molecule.

48. The device of claim 47, wherein the plurality of biological probe molecules are arranged in the form of a probe array.

49. The device of claim 48, wherein the biological probe molecules include at least one of peptides and proteins.

50. The device of claim 48, wherein the biological probe molecules include nucleic acid molecules.

51. The device of claim 47, wherein the intensity of the fluorescence is adjustable by selecting the thickness of the polymer masses, the composition of the polymer layers, or both.

52. A device for referencing fluorescence signals, comprising:

an essentially non-fluorescent carrier; and

a plurality of polymer layers applied to the carrier, at least one polymer layer applied to defined regions of the carrier; and

wherein;

the at least one polymer layer fluoresces in response to corresponding irradiation, and wherein at least two of the polymer layers differ with regard to their thickness and/or composition,

wherein the intensity of the fluorescence is adjustable by selecting one or more of the layer thickness and the composition of the polymer layers.

53. A method of manufacturing a device for referencing fluorescence signals, comprising:

applying at least one polymer layer to at least one defined region of an essentially non-fluorescent carrier using a microtechnical process, wherein the at least one polymer layer fluoresces in response to corresponding irradiation,

wherein the at least one polymer layer is applied to the carrier by positive or negative photolithographic methods.