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Methods and compositions for transcription-based nucleic acid amplification

  • US 7,294,461 B2
  • Filed: 10/14/2003
  • Issued: 11/13/2007
  • Est. Priority Date: 06/26/2000
  • Status: Expired due to Fees
First Claim
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1. A method of generating multiple copies of a nucleic acid sequence of interest, said method comprising the steps of:

  • (a) hybridizing a single stranded target polynucleotide comprising the sequence of interest with a first primer;

    (b) hybridizing a propromoter template switch oligonucleotide (TSO) comprising a propromoter sequence and a region that is hybridizable to a region of the target polynucleotide which is 5′

    with respect to hybridization of the first primer to the target polynucleotide;

    (c) extending the first primer with DNA polymerase such that a first primer extension product comprising a sequence complementary to the propromoter sequence of the propromoter TSO is produced, whereby a complex of first primer extension product, target polynucleotide and propromoter TSO is generated, wherein said complex comprises a double stranded promoter region;

    (d) transcribing from the double stranded promoter region with a DNA-dependent RNA polymerase to generate a sense RNA transcript;

    (e) hybridizing a second primer to the sense RNA transcript of step (d);

    (f) extending the second primer with RNA-dependent DNA polymerase to generate a complex comprising a second primer extension product and an RNA transcript;

    (g) cleaving RNA in the complex of step (f) with an enzyme that cleaves RNA in an RNA/DNA hybrid;

    (h) hybridizing a single stranded second primer extension product with a propromoter polynucleotide, wherein the propromoter polynucleotide comprises a propromoter and a region which hybridizes to the single stranded second primer extension product under conditions which allow transcription to occur by RNA polymerase, such that sense RNA transcripts comprising the sequence of interest are produced;

    whereby multiple copies of the nucleic acid sequence of interest are produced.

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